Wall clock time and date at job start Tue Mar 31 2020 18:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.47149 * 2 1 4 4 C 1.46494 * 120.00334 * 269.99646 * 3 2 1 5 5 C 1.52992 * 109.47207 * 270.00463 * 4 3 2 6 6 C 1.53000 * 109.47141 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47490 * 179.97438 * 6 5 4 8 8 C 1.46900 * 111.00058 * 66.04247 * 7 6 5 9 9 C 1.46897 * 111.00470 * 189.99988 * 7 6 5 10 10 C 1.34784 * 119.99729 * 90.00176 * 3 2 1 11 11 O 1.21287 * 119.99845 * 179.97438 * 10 3 2 12 12 C 1.50701 * 119.99892 * 359.97438 * 10 3 2 13 13 C 1.50699 * 109.46735 * 180.02562 * 12 10 3 14 14 C 1.38305 * 119.93408 * 89.99836 * 13 12 10 15 15 C 1.38101 * 120.07071 * 179.97438 * 14 13 12 16 16 C 1.38876 * 119.92956 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06861 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53840 * 17 16 15 19 19 H 1.08003 * 120.00029 * 354.94359 * 18 17 16 20 20 C 1.38659 * 120.00122 * 174.94542 * 18 17 16 21 21 N 1.31558 * 119.99705 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00035 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47181 * 89.99980 * 22 20 18 24 24 H 1.48498 * 109.47260 * 210.00361 * 22 20 18 25 25 H 1.48502 * 109.47130 * 330.00179 * 22 20 18 26 26 C 1.38880 * 119.86555 * 0.27954 * 16 15 14 27 27 C 1.38102 * 119.92551 * 359.44514 * 26 16 15 28 28 H 1.09003 * 109.47349 * 300.00080 * 1 2 3 29 29 H 1.09006 * 109.46642 * 60.00008 * 1 2 3 30 30 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46827 * 239.99978 * 2 1 3 32 32 H 1.09004 * 109.46827 * 120.00505 * 2 1 3 33 33 H 1.09002 * 109.46753 * 30.00362 * 4 3 2 34 34 H 1.09005 * 109.47346 * 150.00083 * 4 3 2 35 35 H 1.09002 * 109.47182 * 299.99637 * 5 4 3 36 36 H 1.08999 * 109.47519 * 59.99926 * 5 4 3 37 37 H 1.09003 * 109.47385 * 300.00076 * 6 5 4 38 38 H 1.08998 * 109.47621 * 59.99703 * 6 5 4 39 39 H 1.09006 * 109.47050 * 60.00281 * 8 7 6 40 40 H 1.08994 * 109.47465 * 180.02562 * 8 7 6 41 41 H 1.09000 * 109.47394 * 300.00704 * 8 7 6 42 42 H 1.09000 * 109.46997 * 59.99902 * 9 7 6 43 43 H 1.08998 * 109.47418 * 179.97438 * 9 7 6 44 44 H 1.09004 * 109.47068 * 300.00384 * 9 7 6 45 45 H 1.08986 * 109.47293 * 59.99986 * 12 10 3 46 46 H 1.09005 * 109.47046 * 299.99669 * 12 10 3 47 47 H 1.07999 * 119.96326 * 0.02562 * 14 13 12 48 48 H 1.07997 * 120.03156 * 180.02562 * 15 14 13 49 49 H 0.96997 * 119.99350 * 179.97438 * 21 20 18 50 50 H 1.07996 * 120.04097 * 179.72435 * 26 16 15 51 51 H 1.07997 * 119.96688 * 180.27743 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.7076 1.8313 -1.7103 6 6 3.9625 2.5521 -3.0356 7 7 5.3501 2.3217 -3.4594 8 6 5.5737 0.9063 -3.7827 9 6 5.7036 3.1834 -4.5953 10 6 2.2430 2.0165 1.1673 11 8 2.6478 3.1598 1.1673 12 6 1.9913 1.3062 2.4724 13 6 2.3173 2.2296 3.6178 14 6 1.3366 3.0521 4.1418 15 6 1.6321 3.8990 5.1918 16 6 2.9158 3.9247 5.7212 17 8 3.2092 4.7558 6.7537 18 6 2.1847 5.4456 7.2944 19 1 1.2009 5.3861 6.8528 20 6 2.3941 6.2314 8.4175 21 7 1.3943 6.9041 8.9453 22 14 4.0955 6.3338 9.1817 23 1 4.8494 7.4536 8.5631 24 1 3.9687 6.5696 10.6424 25 1 4.8210 5.0595 8.9472 26 6 3.9000 3.1022 5.1887 27 6 3.5968 2.2534 4.1424 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0283 34 1 2.0957 3.1411 -1.1383 35 1 4.3884 2.2154 -0.9506 36 1 3.8745 0.7621 -1.8407 37 1 3.2816 2.1677 -3.7951 38 1 3.7954 3.6213 -2.9057 39 1 4.9071 0.6088 -4.5922 40 1 6.6088 0.7636 -4.0929 41 1 5.3712 0.2961 -2.9025 42 1 5.5955 4.2287 -4.3059 43 1 6.7360 2.9928 -4.8885 44 1 5.0416 2.9684 -5.4343 45 1 2.6211 0.4185 2.5303 46 1 0.9432 1.0125 2.5299 47 1 0.3384 3.0313 3.7300 48 1 0.8657 4.5407 5.6008 49 1 1.5408 7.4535 9.7311 50 1 4.9003 3.1232 5.5952 51 1 4.3605 1.6103 3.7308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276171472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:03 Heat of formation + Delta-G solvation = -56.246509 kcal Electronic energy + Delta-G solvation = -28359.415275 eV Core-core repulsion = 24451.781515 eV Total energy + Delta-G solvation = -3907.633760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.28587 -40.61659 -38.76935 -38.29697 -36.98404 -34.54095 -33.94522 -32.63578 -31.80965 -30.90649 -28.78714 -28.48529 -27.33432 -26.33964 -24.26283 -23.82594 -23.67545 -22.16197 -21.76471 -19.95025 -19.72669 -19.07955 -18.10426 -17.43480 -16.81182 -16.52870 -16.47218 -16.19261 -15.99398 -15.72590 -15.55249 -15.44367 -15.12705 -14.99792 -14.72830 -14.56795 -14.33304 -14.23631 -14.06950 -13.67927 -13.35723 -13.24986 -13.05444 -12.91470 -12.89004 -12.66866 -12.63642 -12.50950 -12.42816 -12.38539 -12.26360 -12.25323 -11.92397 -11.84558 -11.51912 -11.27952 -10.93941 -10.72076 -9.79214 -9.63176 -9.30358 -8.97812 -8.50456 -6.22862 0.58238 0.61900 1.30082 1.35191 1.51024 1.73565 2.08186 2.27868 2.76519 3.02730 3.06617 3.16254 3.74657 3.89472 3.96731 4.02188 4.10710 4.16540 4.19066 4.21042 4.33489 4.39790 4.45855 4.47301 4.53910 4.56926 4.59138 4.63949 4.65622 4.69278 4.72306 4.78953 4.82914 4.96345 4.96624 4.98977 5.02506 5.06748 5.17610 5.25050 5.27562 5.36724 5.45454 5.56476 5.70768 5.73849 5.79541 5.90962 6.07836 6.10020 6.24038 6.48311 6.83666 7.31689 7.58518 8.61296 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.002205 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.696196 B =12697.407377 C =13839.538532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.611 5.611 4 C 0.118 3.882 5 C -0.117 4.117 6 C 0.061 3.939 7 N -0.571 5.571 8 C 0.023 3.977 9 C 0.025 3.975 10 C 0.509 3.491 11 O -0.579 6.579 12 C -0.079 4.079 13 C -0.136 4.136 14 C -0.066 4.066 15 C -0.237 4.237 16 C 0.118 3.882 17 O -0.246 6.246 18 C -0.399 4.399 19 H 0.079 0.921 20 C 0.008 3.992 21 N -0.923 5.923 22 Si 0.972 3.028 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.262 1.262 26 C -0.193 4.193 27 C -0.060 4.060 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.033 0.967 45 H 0.131 0.869 46 H 0.121 0.879 47 H 0.131 0.869 48 H 0.106 0.894 49 H 0.285 0.715 50 H 0.128 0.872 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.620 -20.623 -27.978 34.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.344 5.344 4 C -0.006 4.006 5 C -0.156 4.156 6 C -0.067 4.067 7 N -0.296 5.296 8 C -0.125 4.125 9 C -0.123 4.123 10 C 0.298 3.702 11 O -0.458 6.458 12 C -0.118 4.118 13 C -0.137 4.137 14 C -0.084 4.084 15 C -0.257 4.257 16 C 0.069 3.931 17 O -0.154 6.154 18 C -0.476 4.476 19 H 0.097 0.903 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.794 3.206 23 H -0.193 1.193 24 H -0.189 1.189 25 H -0.187 1.187 26 C -0.212 4.212 27 C -0.077 4.077 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.149 0.851 46 H 0.139 0.861 47 H 0.149 0.851 48 H 0.124 0.876 49 H 0.094 0.906 50 H 0.146 0.854 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.263 -19.726 -27.337 33.868 hybrid contribution -0.450 0.846 0.029 0.959 sum 2.813 -18.879 -27.307 33.317 Atomic orbital electron populations 1.22222 0.95402 1.03400 1.01983 1.21890 0.94775 0.80400 1.05274 1.48119 1.65734 1.15590 1.04959 1.21372 0.96363 0.97599 0.85237 1.21788 0.96199 1.01200 0.96381 1.22002 0.88279 1.00431 0.96021 1.61928 1.23449 1.07133 1.37068 1.22449 1.01705 0.87843 1.00488 1.22391 1.01354 0.97371 0.91225 1.21158 0.76351 0.86220 0.86450 1.90745 1.46836 1.20269 1.87914 1.20608 1.05849 0.97850 0.87495 1.19314 0.93776 1.01237 0.99362 1.20885 0.99687 0.93865 0.93924 1.21238 0.96891 1.05251 1.02290 1.19665 0.94479 0.90409 0.88521 1.83506 1.36124 1.51709 1.44051 1.20710 0.89723 1.25334 1.11805 0.90344 1.25307 1.03105 0.94858 0.95737 1.69733 1.33047 1.30107 1.23537 0.85195 0.78147 0.79485 0.77736 1.19283 1.18891 1.18666 1.20496 0.98630 1.00197 1.01863 1.20918 0.96366 0.96834 0.93621 0.93294 0.92797 0.89424 0.88224 0.88439 0.88012 0.92691 0.94035 0.90253 0.93178 0.91828 0.94812 0.91048 0.91003 0.91812 0.90684 0.94861 0.85075 0.86109 0.85143 0.87562 0.90562 0.85418 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.24 71.98 0.74 -0.58 16 2 C 0.10 0.78 5.93 86.38 0.51 1.29 16 3 N -0.61 -10.21 2.47 -821.80 -2.03 -12.24 16 4 C 0.12 1.91 5.41 86.38 0.47 2.38 16 5 C -0.12 -1.89 5.46 30.59 0.17 -1.72 16 6 C 0.06 0.92 4.96 86.30 0.43 1.35 16 7 N -0.57 -9.14 5.02 -948.84 -4.76 -13.90 16 8 C 0.02 0.27 9.32 127.69 1.19 1.46 16 9 C 0.02 0.32 9.57 127.69 1.22 1.54 16 10 C 0.51 12.77 7.67 87.66 0.67 13.45 16 11 O -0.58 -21.37 15.61 -3.05 -0.05 -21.42 16 12 C -0.08 -1.64 4.38 29.10 0.13 -1.51 16 13 C -0.14 -4.36 4.38 -19.83 -0.09 -4.44 16 14 C -0.07 -2.48 9.69 22.25 0.22 -2.27 16 15 C -0.24 -11.33 9.17 22.39 0.21 -11.13 16 16 C 0.12 5.96 6.65 22.58 0.15 6.11 16 17 O -0.25 -14.19 8.59 -22.72 -0.20 -14.39 16 18 C -0.40 -24.70 9.95 67.92 0.68 -24.03 16 19 H 0.08 5.09 5.44 -2.91 -0.02 5.08 16 20 C 0.01 0.48 5.49 84.83 0.47 0.95 16 21 N -0.92 -56.90 13.96 21.61 0.30 -56.60 16 22 Si 0.97 47.28 28.62 68.60 1.96 49.24 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 26 C -0.19 -8.03 9.99 22.39 0.22 -7.81 16 27 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 28 H 0.05 0.52 7.22 -2.39 -0.02 0.50 16 29 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.10 0.40 8.07 -2.39 -0.02 0.38 16 32 H 0.10 0.52 6.44 -2.38 -0.02 0.50 16 33 H 0.10 1.04 8.07 -2.39 -0.02 1.02 16 34 H 0.05 1.24 7.42 -2.38 -0.02 1.23 16 35 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.00 6.55 -2.39 -0.02 0.98 16 37 H 0.05 0.58 8.12 -2.39 -0.02 0.57 16 38 H 0.06 1.12 8.06 -2.39 -0.02 1.10 16 39 H 0.03 0.32 8.14 -2.38 -0.02 0.30 16 40 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 41 H 0.07 0.79 6.47 -2.39 -0.02 0.78 16 42 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 43 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 44 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 45 H 0.13 1.79 7.34 -2.39 -0.02 1.77 16 46 H 0.12 1.91 7.13 -2.38 -0.02 1.89 16 47 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 48 H 0.11 5.53 5.64 -2.91 -0.02 5.51 16 49 H 0.28 16.04 8.31 -92.71 -0.77 15.27 16 50 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 51 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -80.57 413.07 3.72 -76.86 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.90 Total: 19.19 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 7.59 Total: -26.74 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -6.49 Total: -82.74 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.24 Total: -35.81 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.96 Total: 49.24 kcal Total: -80.57 3.72 -76.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276171472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.609 kcal (2) G-P(sol) polarization free energy of solvation -80.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds