Wall clock time and date at job start Tue Mar 31 2020 18:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47067 * 2 1 4 4 C 1.46494 * 119.99862 * 269.99916 * 3 2 1 5 5 C 1.50699 * 109.47317 * 269.99722 * 4 3 2 6 6 H 1.08004 * 119.99943 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00166 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99981 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 120.00078 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47297 * 90.00229 * 9 7 5 11 11 H 1.48506 * 109.46895 * 210.00471 * 9 7 5 12 12 H 1.48494 * 109.46903 * 329.99993 * 9 7 5 13 13 C 1.34779 * 119.99947 * 90.00296 * 3 2 1 14 14 O 1.21278 * 119.99992 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00018 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.46996 * 180.02562 * 15 13 3 17 17 C 1.46898 * 110.99973 * 66.04854 * 16 15 13 18 18 C 1.46903 * 110.99999 * 190.00297 * 16 15 13 19 19 C 1.52999 * 109.47249 * 75.87909 * 18 16 15 20 20 H 1.09000 * 109.46988 * 300.45372 * 19 18 16 21 21 O 1.42906 * 109.47095 * 60.45263 * 19 18 16 22 22 C 1.52996 * 109.47234 * 180.45006 * 19 18 16 23 23 C 1.50701 * 109.47378 * 174.99818 * 22 19 18 24 24 C 1.38236 * 119.99596 * 90.00142 * 23 22 19 25 25 C 1.38234 * 120.00057 * 179.97438 * 24 23 22 26 26 C 1.38240 * 119.99932 * 359.97396 * 25 24 23 27 27 C 1.38239 * 119.99743 * 0.27908 * 26 25 24 28 28 C 1.38232 * 120.00394 * 269.98403 * 23 22 19 29 29 H 1.09002 * 109.47238 * 299.99537 * 1 2 3 30 30 H 1.08997 * 109.47448 * 60.00091 * 1 2 3 31 31 H 1.08998 * 109.47129 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47274 * 239.99924 * 2 1 3 33 33 H 1.09006 * 109.47270 * 120.00056 * 2 1 3 34 34 H 1.09000 * 109.47113 * 30.00049 * 4 3 2 35 35 H 1.09001 * 109.47039 * 150.00303 * 4 3 2 36 36 H 0.97007 * 119.99777 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.46985 * 60.00623 * 15 13 3 38 38 H 1.08994 * 109.47415 * 300.00273 * 15 13 3 39 39 H 1.08998 * 109.47172 * 188.97581 * 17 16 15 40 40 H 1.08997 * 109.46949 * 308.97743 * 17 16 15 41 41 H 1.09000 * 109.47041 * 68.97592 * 17 16 15 42 42 H 1.09004 * 109.46794 * 315.87779 * 18 16 15 43 43 H 1.08998 * 109.47297 * 195.88016 * 18 16 15 44 44 H 0.96700 * 113.99938 * 59.99647 * 21 19 18 45 45 H 1.09006 * 109.46888 * 55.00280 * 22 19 18 46 46 H 1.09005 * 109.47534 * 295.00356 * 22 19 18 47 47 H 1.08003 * 120.00072 * 359.97438 * 24 23 22 48 48 H 1.08003 * 120.00290 * 180.02562 * 25 24 23 49 49 H 1.08001 * 120.00140 * 180.02562 * 26 25 24 50 50 H 1.07993 * 119.99698 * 179.72099 * 27 26 25 51 51 H 1.07999 * 120.00201 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1490 2.3896 -2.8779 8 7 3.3490 3.1256 -3.6180 9 14 5.9131 2.0956 -3.4175 10 1 5.9761 0.8744 -4.2601 11 1 6.3922 3.2628 -4.2007 12 1 6.7734 1.9160 -2.2205 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3091 2.2065 3.5889 17 6 1.3826 3.3458 3.6267 18 6 2.3051 1.4820 4.8668 19 6 3.5823 0.6477 4.9841 20 1 3.6306 -0.0608 4.1572 21 8 4.7206 1.5105 4.9393 22 6 3.5728 -0.1156 6.3100 23 6 4.7689 -1.0302 6.3717 24 6 5.9595 -0.5759 6.9075 25 6 7.0565 -1.4150 6.9646 26 6 6.9629 -2.7087 6.4863 27 6 5.7738 -3.1613 5.9456 28 6 4.6755 -2.3236 5.8927 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0283 35 1 2.0955 3.1410 -1.1384 36 1 3.6751 3.5161 -4.4440 37 1 2.6213 0.4187 2.5302 38 1 0.9433 1.0125 2.5299 39 1 1.7329 4.0750 4.3572 40 1 1.3380 3.8107 2.6419 41 1 0.3892 2.9970 3.9091 42 1 1.4366 0.8247 4.9090 43 1 2.2607 2.1960 5.6892 44 1 4.7435 2.1686 5.6475 45 1 2.6596 -0.7063 6.3827 46 1 3.6141 0.5928 7.1375 47 1 6.0325 0.4346 7.2816 48 1 7.9866 -1.0603 7.3837 49 1 7.8198 -3.3644 6.5313 50 1 5.7020 -4.1704 5.5679 51 1 3.7452 -2.6787 5.4747 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293195520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:12 Heat of formation + Delta-G solvation = -53.492467 kcal Electronic energy + Delta-G solvation = -29288.819551 eV Core-core repulsion = 25381.305215 eV Total energy + Delta-G solvation = -3907.514336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.76301 -39.24666 -37.84460 -35.90753 -35.00673 -32.99901 -32.73792 -31.03300 -30.11515 -29.84439 -28.68937 -26.73931 -26.39223 -23.51076 -22.96870 -22.73926 -22.44073 -21.15947 -21.05377 -18.30053 -17.20494 -16.65108 -16.41318 -16.29546 -15.82347 -15.51919 -15.47373 -15.20710 -14.81793 -14.64890 -14.30383 -14.11946 -13.66204 -13.53107 -13.37719 -13.24846 -13.11653 -12.75032 -12.55373 -12.37227 -12.14098 -11.95830 -11.83966 -11.68717 -11.56503 -11.30955 -11.23139 -11.13431 -11.10270 -10.86582 -10.84476 -10.67461 -10.45924 -10.09510 -10.05306 -9.54820 -9.05462 -8.84124 -8.73244 -8.37331 -8.08230 -7.56846 -5.98196 -4.02167 1.20229 1.26885 3.35230 3.41797 3.46029 3.53161 3.56341 3.73259 4.15926 4.43816 4.48168 4.52910 4.69109 4.79304 4.85511 4.96392 5.00448 5.04269 5.11632 5.19708 5.29148 5.35582 5.36198 5.37606 5.41785 5.44888 5.51841 5.55556 5.64098 5.70476 5.75656 5.80542 5.85524 5.88607 5.97188 6.03679 6.24352 6.30683 6.31528 6.36804 6.46227 6.48202 6.85889 6.96934 7.15777 7.20400 7.50823 7.63650 7.76307 7.99247 8.30792 8.51119 8.98501 9.21750 9.63067 11.09855 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.003014 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.964197 B = 9286.393746 C =10509.127444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.037 3.963 16 N -0.512 5.512 17 C 0.023 3.977 18 C 0.023 3.977 19 C 0.118 3.882 20 H 0.096 0.904 21 O -0.535 6.535 22 C -0.114 4.114 23 C -0.073 4.073 24 C -0.104 4.104 25 C -0.120 4.120 26 C -0.127 4.127 27 C -0.120 4.120 28 C -0.120 4.120 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.014 0.986 42 H 0.041 0.959 43 H 0.077 0.923 44 H 0.366 0.634 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.120 0.880 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.083 -11.315 22.993 25.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.294 3.706 14 O -0.397 6.397 15 C -0.094 4.094 16 N -0.235 5.235 17 C -0.125 4.125 18 C -0.106 4.106 19 C 0.058 3.942 20 H 0.114 0.886 21 O -0.339 6.339 22 C -0.152 4.152 23 C -0.073 4.073 24 C -0.122 4.122 25 C -0.138 4.138 26 C -0.145 4.145 27 C -0.138 4.138 28 C -0.138 4.138 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.032 0.968 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.212 0.788 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.264 -10.748 22.190 24.759 hybrid contribution -0.034 -0.345 0.168 0.385 sum -2.298 -11.093 22.358 25.064 Atomic orbital electron populations 1.22222 0.96965 1.01291 1.02194 1.21383 0.93328 0.84482 1.02542 1.48261 1.64215 1.13170 1.07730 1.19229 0.96191 0.93565 0.78096 1.21458 0.96975 1.31666 1.06077 0.92455 1.24925 0.97799 0.94952 0.96435 1.69937 1.35676 1.33650 1.14354 0.86515 0.84863 0.77591 0.78604 1.20710 1.21119 1.19797 1.20079 0.78772 0.87146 0.84651 1.90639 1.44484 1.17892 1.86723 1.22116 0.99790 0.96341 0.91201 1.61472 1.52220 1.08772 1.01046 1.22534 0.91918 0.93268 1.04748 1.22896 0.97426 0.97495 0.92741 1.21871 0.85476 0.90890 0.95962 0.88611 1.86734 1.43715 1.48556 1.54850 1.21362 0.96442 0.98378 0.99037 1.19691 0.95244 0.94167 0.98233 1.20990 0.92533 0.99273 0.99365 1.21145 0.98509 0.94110 1.00045 1.21137 0.97785 0.96206 0.99345 1.21118 0.93264 0.99771 0.99640 1.21037 0.98879 0.93666 1.00175 0.93332 0.91991 0.92247 0.89951 0.92040 0.95167 0.93991 0.92817 0.88790 0.92898 0.91719 0.89042 0.96767 0.94046 0.90427 0.78790 0.90145 0.90562 0.86233 0.86240 0.86342 0.86211 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.91 2.46 -175.06 -0.43 -13.34 16 4 C 0.25 6.61 5.16 -5.20 -0.03 6.58 16 5 C -0.52 -15.23 9.39 -34.44 -0.32 -15.55 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.51 10.83 7.32 -10.99 -0.08 10.75 16 14 O -0.52 -13.43 13.96 5.56 0.08 -13.36 16 15 C 0.04 0.57 3.83 -4.98 -0.02 0.55 16 16 N -0.51 -7.61 4.30 -244.37 -1.05 -8.66 16 17 C 0.02 0.33 9.15 60.06 0.55 0.88 16 18 C 0.02 0.24 4.66 -3.82 -0.02 0.22 16 19 C 0.12 1.25 3.02 -26.73 -0.08 1.17 16 20 H 0.10 1.18 6.78 -51.93 -0.35 0.83 16 21 O -0.54 -6.91 12.71 -35.23 -0.45 -7.36 16 22 C -0.11 -0.91 5.03 -27.88 -0.14 -1.05 16 23 C -0.07 -0.71 4.97 -104.62 -0.52 -1.23 16 24 C -0.10 -1.01 9.40 -39.58 -0.37 -1.39 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 26 C -0.13 -1.19 10.05 -39.58 -0.40 -1.58 16 27 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 28 C -0.12 -1.15 9.70 -39.59 -0.38 -1.54 16 29 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 33 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.09 1.37 5.89 -51.93 -0.31 1.07 16 38 H 0.05 0.71 7.16 -51.93 -0.37 0.34 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.64 5.79 -51.93 -0.30 1.34 16 41 H 0.01 0.17 8.13 -51.93 -0.42 -0.25 16 42 H 0.04 0.37 8.00 -51.93 -0.42 -0.04 16 43 H 0.08 0.69 7.94 -51.93 -0.41 0.27 16 44 H 0.37 3.36 9.05 45.56 0.41 3.77 16 45 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 46 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 47 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 48 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 50 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 51 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 413.92 15.07 6.24 6.24 Total: -1.00 -36.09 413.92 -10.12 -46.20 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.87 Total: 2.93 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -2.35 Total: -3.73 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.75 Total: -48.43 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.37 Total: -20.71 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.09 -10.12 -46.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293195520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.288 kcal (2) G-P(sol) polarization free energy of solvation -36.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds