Wall clock time and date at job start Tue Mar 31 2020 18:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47067 * 2 1 4 4 C 1.46494 * 119.99862 * 269.99916 * 3 2 1 5 5 C 1.50699 * 109.47317 * 269.99722 * 4 3 2 6 6 H 1.08004 * 119.99943 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00166 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99981 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 120.00078 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47297 * 90.00229 * 9 7 5 11 11 H 1.48506 * 109.46895 * 210.00471 * 9 7 5 12 12 H 1.48494 * 109.46903 * 329.99993 * 9 7 5 13 13 C 1.34779 * 119.99947 * 90.00296 * 3 2 1 14 14 O 1.21278 * 119.99992 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00018 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.46996 * 180.02562 * 15 13 3 17 17 C 1.46898 * 110.99973 * 66.04854 * 16 15 13 18 18 C 1.46903 * 110.99999 * 190.00297 * 16 15 13 19 19 C 1.52999 * 109.47249 * 75.87909 * 18 16 15 20 20 H 1.09000 * 109.46988 * 300.45372 * 19 18 16 21 21 O 1.42906 * 109.47095 * 60.45263 * 19 18 16 22 22 C 1.52996 * 109.47234 * 180.45006 * 19 18 16 23 23 C 1.50701 * 109.47378 * 174.99818 * 22 19 18 24 24 C 1.38236 * 119.99596 * 90.00142 * 23 22 19 25 25 C 1.38234 * 120.00057 * 179.97438 * 24 23 22 26 26 C 1.38240 * 119.99932 * 359.97396 * 25 24 23 27 27 C 1.38239 * 119.99743 * 0.27908 * 26 25 24 28 28 C 1.38232 * 120.00394 * 269.98403 * 23 22 19 29 29 H 1.09002 * 109.47238 * 299.99537 * 1 2 3 30 30 H 1.08997 * 109.47448 * 60.00091 * 1 2 3 31 31 H 1.08998 * 109.47129 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47274 * 239.99924 * 2 1 3 33 33 H 1.09006 * 109.47270 * 120.00056 * 2 1 3 34 34 H 1.09000 * 109.47113 * 30.00049 * 4 3 2 35 35 H 1.09001 * 109.47039 * 150.00303 * 4 3 2 36 36 H 0.97007 * 119.99777 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.46985 * 60.00623 * 15 13 3 38 38 H 1.08994 * 109.47415 * 300.00273 * 15 13 3 39 39 H 1.08998 * 109.47172 * 188.97581 * 17 16 15 40 40 H 1.08997 * 109.46949 * 308.97743 * 17 16 15 41 41 H 1.09000 * 109.47041 * 68.97592 * 17 16 15 42 42 H 1.09004 * 109.46794 * 315.87779 * 18 16 15 43 43 H 1.08998 * 109.47297 * 195.88016 * 18 16 15 44 44 H 0.96700 * 113.99938 * 59.99647 * 21 19 18 45 45 H 1.09006 * 109.46888 * 55.00280 * 22 19 18 46 46 H 1.09005 * 109.47534 * 295.00356 * 22 19 18 47 47 H 1.08003 * 120.00072 * 359.97438 * 24 23 22 48 48 H 1.08003 * 120.00290 * 180.02562 * 25 24 23 49 49 H 1.08001 * 120.00140 * 180.02562 * 26 25 24 50 50 H 1.07993 * 119.99698 * 179.72099 * 27 26 25 51 51 H 1.07999 * 120.00201 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1490 2.3896 -2.8779 8 7 3.3490 3.1256 -3.6180 9 14 5.9131 2.0956 -3.4175 10 1 5.9761 0.8744 -4.2601 11 1 6.3922 3.2628 -4.2007 12 1 6.7734 1.9160 -2.2205 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3091 2.2065 3.5889 17 6 1.3826 3.3458 3.6267 18 6 2.3051 1.4820 4.8668 19 6 3.5823 0.6477 4.9841 20 1 3.6306 -0.0608 4.1572 21 8 4.7206 1.5105 4.9393 22 6 3.5728 -0.1156 6.3100 23 6 4.7689 -1.0302 6.3717 24 6 5.9595 -0.5759 6.9075 25 6 7.0565 -1.4150 6.9646 26 6 6.9629 -2.7087 6.4863 27 6 5.7738 -3.1613 5.9456 28 6 4.6755 -2.3236 5.8927 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0283 35 1 2.0955 3.1410 -1.1384 36 1 3.6751 3.5161 -4.4440 37 1 2.6213 0.4187 2.5302 38 1 0.9433 1.0125 2.5299 39 1 1.7329 4.0750 4.3572 40 1 1.3380 3.8107 2.6419 41 1 0.3892 2.9970 3.9091 42 1 1.4366 0.8247 4.9090 43 1 2.2607 2.1960 5.6892 44 1 4.7435 2.1686 5.6475 45 1 2.6596 -0.7063 6.3827 46 1 3.6141 0.5928 7.1375 47 1 6.0325 0.4346 7.2816 48 1 7.9866 -1.0603 7.3837 49 1 7.8198 -3.3644 6.5313 50 1 5.7020 -4.1704 5.5679 51 1 3.7452 -2.6787 5.4747 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293195520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:11 Heat of formation + Delta-G solvation = -78.750805 kcal Electronic energy + Delta-G solvation = -29289.914835 eV Core-core repulsion = 25381.305215 eV Total energy + Delta-G solvation = -3908.609620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.94878 -40.27251 -38.83654 -37.16482 -36.50220 -34.90084 -33.71576 -31.69678 -31.66016 -30.75261 -30.10984 -28.30888 -27.43064 -25.09770 -24.32195 -23.74422 -23.38363 -22.12803 -21.83148 -19.87834 -18.64388 -18.19471 -17.64566 -17.40555 -17.03042 -16.71164 -16.64283 -16.25740 -15.86890 -15.78082 -15.56794 -15.37367 -14.92159 -14.67043 -14.48280 -14.24996 -14.17986 -14.03117 -13.69162 -13.55373 -13.36446 -13.26437 -13.10268 -12.85636 -12.76503 -12.67451 -12.56357 -12.49937 -12.45097 -12.15497 -12.01336 -11.84352 -11.76275 -11.71082 -11.62906 -10.94272 -10.64265 -10.43055 -9.74126 -9.49513 -9.40254 -9.10498 -8.22511 -6.37002 0.51833 0.58168 1.34300 1.37949 1.48593 1.89841 2.26193 2.41165 2.86871 3.06006 3.07174 3.67859 3.73047 3.78627 4.03101 4.05779 4.08639 4.18336 4.23328 4.26048 4.33122 4.35429 4.43547 4.47413 4.51917 4.59310 4.62159 4.66097 4.71331 4.77520 4.81063 4.93454 4.94062 4.98202 5.05413 5.13871 5.15958 5.22140 5.25370 5.27223 5.37816 5.58995 5.63803 5.69180 5.78627 5.86977 5.99175 6.08015 6.18279 6.22271 6.71399 6.86061 7.05973 7.29615 7.57618 8.84274 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.003014 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.964197 B = 9286.393746 C =10509.127444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.049 0.951 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.495 3.505 14 O -0.578 6.578 15 C 0.054 3.946 16 N -0.540 5.540 17 C 0.029 3.971 18 C 0.028 3.972 19 C 0.121 3.879 20 H 0.076 0.924 21 O -0.567 6.567 22 C -0.102 4.102 23 C -0.086 4.086 24 C -0.119 4.119 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.134 4.134 28 C -0.133 4.133 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.021 0.979 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.379 0.621 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.129 0.871 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.135 0.865 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 -13.520 24.971 28.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.340 5.340 4 C 0.144 3.856 5 C -0.580 4.580 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.284 3.716 14 O -0.458 6.458 15 C -0.077 4.077 16 N -0.265 5.265 17 C -0.119 4.119 18 C -0.099 4.099 19 C 0.061 3.939 20 H 0.094 0.906 21 O -0.373 6.373 22 C -0.140 4.140 23 C -0.086 4.086 24 C -0.137 4.137 25 C -0.154 4.154 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.151 4.151 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.039 0.961 35 H 0.013 0.987 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.228 0.772 45 H 0.118 0.882 46 H 0.111 0.889 47 H 0.147 0.853 48 H 0.150 0.850 49 H 0.151 0.849 50 H 0.153 0.847 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.695 -13.002 24.195 27.599 hybrid contribution 0.093 0.351 -0.424 0.558 sum -2.602 -12.651 23.771 27.054 Atomic orbital electron populations 1.22139 0.94422 1.03516 1.01596 1.21723 0.95386 0.81477 1.03689 1.48305 1.64361 1.15108 1.06229 1.18635 0.95055 0.91415 0.80505 1.21707 0.98013 1.31880 1.06397 0.93321 1.25832 1.02306 0.94481 0.96440 1.70050 1.37709 1.34258 1.14797 0.85452 0.79114 0.78359 0.78112 1.18553 1.20411 1.20213 1.21227 0.77309 0.86760 0.86332 1.90609 1.46921 1.20563 1.87719 1.21970 1.01846 0.95789 0.88083 1.61378 1.53016 1.09432 1.02656 1.22388 0.93440 0.93528 1.02499 1.22960 0.98134 0.98010 0.90830 1.21861 0.84901 0.90447 0.96709 0.90623 1.86685 1.45036 1.49496 1.56043 1.21273 0.96496 0.98278 0.97927 1.19969 0.95892 0.94627 0.98142 1.21260 0.92863 0.99902 0.99697 1.21436 0.99215 0.94433 1.00297 1.21430 0.98510 0.96551 0.99316 1.21429 0.93373 1.00680 0.99668 1.21345 0.99644 0.93886 1.00239 0.92242 0.94310 0.88496 0.91133 0.88547 0.96066 0.98742 0.92406 0.87367 0.89714 0.90595 0.93478 0.94160 0.91452 0.88450 0.77248 0.88186 0.88868 0.85265 0.85009 0.84875 0.84706 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.16 16 2 C 0.10 3.10 5.93 86.38 0.51 3.62 16 3 N -0.61 -26.70 2.46 -826.16 -2.03 -28.73 16 4 C 0.27 14.88 5.16 85.63 0.44 15.32 16 5 C -0.54 -32.63 9.39 25.60 0.24 -32.39 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.01 0.49 5.46 84.65 0.46 0.95 16 8 N -0.93 -57.78 13.29 21.44 0.28 -57.49 16 9 Si 0.97 46.81 29.54 68.60 2.03 48.84 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 13 C 0.50 21.51 7.32 87.66 0.64 22.15 16 14 O -0.58 -31.37 13.96 -3.02 -0.04 -31.41 16 15 C 0.05 1.58 3.83 85.56 0.33 1.90 16 16 N -0.54 -15.10 4.30 -927.06 -3.99 -19.09 16 17 C 0.03 0.81 9.15 127.69 1.17 1.97 16 18 C 0.03 0.48 4.66 86.30 0.40 0.89 16 19 C 0.12 2.25 3.02 30.59 0.09 2.34 16 20 H 0.08 1.71 6.78 -2.39 -0.02 1.69 16 21 O -0.57 -13.91 12.71 -148.98 -1.89 -15.81 16 22 C -0.10 -1.30 5.03 29.85 0.15 -1.15 16 23 C -0.09 -1.51 4.97 -19.87 -0.10 -1.61 16 24 C -0.12 -2.19 9.40 22.27 0.21 -1.98 16 25 C -0.14 -2.47 10.05 22.27 0.22 -2.25 16 26 C -0.14 -2.48 10.05 22.27 0.22 -2.26 16 27 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 28 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 29 H 0.06 1.33 7.22 -2.39 -0.02 1.32 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 33 H 0.10 2.33 6.44 -2.38 -0.02 2.32 16 34 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 35 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 36 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 37 H 0.11 2.87 5.89 -2.39 -0.01 2.86 16 38 H 0.09 1.94 7.16 -2.39 -0.02 1.93 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.05 1.73 5.79 -2.39 -0.01 1.72 16 41 H 0.04 0.87 8.13 -2.39 -0.02 0.85 16 42 H 0.07 0.86 8.00 -2.38 -0.02 0.84 16 43 H 0.10 1.33 7.94 -2.39 -0.02 1.31 16 44 H 0.38 6.43 9.05 -74.06 -0.67 5.76 16 45 H 0.10 0.90 8.09 -2.38 -0.02 0.88 16 46 H 0.09 0.88 8.09 -2.38 -0.02 0.86 16 47 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 48 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 49 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 50 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 51 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -83.65 413.92 0.77 -82.88 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.24 Total: 20.66 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 6.17 Total: 0.14 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -5.73 Total: -105.30 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.94 Total: -47.22 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -83.65 0.77 -82.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293195520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.132 kcal (2) G-P(sol) polarization free energy of solvation -83.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds