Wall clock time and date at job start Tue Mar 31 2020 18:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47027 * 2 1 4 4 C 1.46503 * 120.00219 * 270.00240 * 3 2 1 5 5 C 1.50704 * 109.46904 * 270.00070 * 4 3 2 6 6 H 1.08004 * 119.99696 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00000 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99796 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00139 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47090 * 89.99514 * 9 7 5 11 11 H 1.48497 * 109.47025 * 209.99702 * 9 7 5 12 12 H 1.48499 * 109.46986 * 329.99629 * 9 7 5 13 13 C 1.34777 * 119.99770 * 90.00216 * 3 2 1 14 14 O 1.21290 * 119.99921 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00094 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47305 * 180.02562 * 15 13 3 17 17 C 1.46897 * 110.99735 * 293.95407 * 16 15 13 18 18 C 1.46892 * 111.00022 * 169.99832 * 16 15 13 19 19 C 1.53004 * 109.47474 * 287.96496 * 18 16 15 20 20 H 1.08997 * 109.47060 * 58.52116 * 19 18 16 21 21 O 1.42901 * 109.46702 * 298.52216 * 19 18 16 22 22 C 1.53001 * 109.47188 * 178.52111 * 19 18 16 23 23 C 1.50697 * 109.46864 * 184.99820 * 22 19 18 24 24 C 1.38242 * 119.99864 * 90.00291 * 23 22 19 25 25 C 1.38234 * 120.00042 * 180.02562 * 24 23 22 26 26 C 1.38235 * 119.99915 * 359.97438 * 25 24 23 27 27 C 1.38238 * 120.00025 * 0.25577 * 26 25 24 28 28 C 1.38233 * 120.00288 * 270.01868 * 23 22 19 29 29 H 1.09002 * 109.47054 * 299.99716 * 1 2 3 30 30 H 1.09000 * 109.47122 * 59.99985 * 1 2 3 31 31 H 1.09003 * 109.47132 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47054 * 240.00284 * 2 1 3 33 33 H 1.09000 * 109.47122 * 120.00015 * 2 1 3 34 34 H 1.08998 * 109.46924 * 29.99649 * 4 3 2 35 35 H 1.09000 * 109.47067 * 149.99992 * 4 3 2 36 36 H 0.96991 * 119.99757 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47258 * 59.99888 * 15 13 3 38 38 H 1.09000 * 109.47153 * 299.99762 * 15 13 3 39 39 H 1.09007 * 109.47140 * 302.02816 * 17 16 15 40 40 H 1.08999 * 109.47355 * 62.03122 * 17 16 15 41 41 H 1.08994 * 109.47542 * 182.03185 * 17 16 15 42 42 H 1.09002 * 109.47119 * 167.96629 * 18 16 15 43 43 H 1.08997 * 109.47644 * 47.96841 * 18 16 15 44 44 H 0.96700 * 113.99614 * 299.99316 * 21 19 18 45 45 H 1.09004 * 109.47303 * 64.99832 * 22 19 18 46 46 H 1.08998 * 109.47005 * 305.00057 * 22 19 18 47 47 H 1.08000 * 119.99564 * 359.97438 * 24 23 22 48 48 H 1.08003 * 120.00071 * 179.97438 * 25 24 23 49 49 H 1.07999 * 119.99796 * 179.97438 * 26 25 24 50 50 H 1.07998 * 119.99938 * 179.72689 * 27 26 25 51 51 H 1.07991 * 119.99937 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1494 2.3906 -2.8774 8 7 3.3493 3.1267 -3.6175 9 14 5.9134 2.0965 -3.4171 10 1 5.9760 0.8760 -4.2607 11 1 6.3929 3.2641 -4.1993 12 1 6.7735 1.9156 -2.2202 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1673 15 6 1.9913 1.3063 2.4723 16 7 2.3091 2.2064 3.5889 17 6 3.7458 2.5101 3.6277 18 6 1.8559 1.6406 4.8665 19 6 0.3291 1.7075 4.9410 20 1 -0.1000 1.1581 4.1031 21 8 -0.0913 3.0720 4.8814 22 6 -0.1451 1.0847 6.2556 23 6 -1.6513 1.0391 6.2752 24 6 -2.3157 -0.0672 5.7796 25 6 -3.6973 -0.1090 5.7971 26 6 -4.4145 0.9554 6.3106 27 6 -3.7502 2.0637 6.8019 28 6 -2.3685 2.1035 6.7885 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6878 -2.0284 35 1 2.0955 3.1411 -1.1383 36 1 3.6754 3.5172 -4.4433 37 1 2.6211 0.4186 2.5302 38 1 0.9432 1.0125 2.5299 39 1 4.3111 1.5824 3.7166 40 1 4.0334 3.0244 2.7107 41 1 3.9591 3.1490 4.4847 42 1 2.2852 2.2120 5.6896 43 1 2.1779 0.6018 4.9385 44 1 0.2538 3.6215 5.5984 45 1 0.2111 1.6862 7.0920 46 1 0.2503 0.0726 6.3416 47 1 -1.7553 -0.8986 5.3780 48 1 -4.2165 -0.9731 5.4095 49 1 -5.4939 0.9230 6.3239 50 1 -4.3106 2.8971 7.1991 51 1 -1.8494 2.9680 7.1751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293195523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:15 Heat of formation + Delta-G solvation = -54.036684 kcal Electronic energy + Delta-G solvation = -29286.604601 eV Core-core repulsion = 25379.066666 eV Total energy + Delta-G solvation = -3907.537935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -39.79716 -39.24207 -37.87098 -35.91150 -34.99551 -33.03731 -32.76218 -31.07222 -30.09183 -29.86620 -28.68190 -26.73857 -26.40806 -23.51722 -22.95482 -22.77360 -22.46166 -21.19591 -21.05806 -18.28633 -17.22462 -16.65866 -16.42679 -16.33019 -15.84047 -15.70937 -15.33987 -15.24427 -14.89386 -14.64379 -14.24158 -14.10052 -13.69046 -13.59194 -13.41632 -13.28060 -13.06560 -12.72393 -12.56427 -12.34504 -12.16907 -11.94476 -11.87057 -11.68079 -11.50189 -11.33539 -11.29181 -11.17391 -11.14861 -10.87657 -10.84422 -10.64933 -10.48444 -10.13164 -10.06574 -9.58649 -9.09518 -8.87057 -8.75894 -8.40280 -8.05408 -7.57230 -6.00692 -4.05330 1.16246 1.22820 3.31096 3.37761 3.41231 3.52795 3.53879 3.71479 4.15401 4.41246 4.44693 4.49433 4.65160 4.76391 4.81839 4.92764 4.96541 5.04418 5.10119 5.19173 5.29350 5.31972 5.33512 5.39533 5.41975 5.46879 5.49528 5.52786 5.67807 5.72494 5.75409 5.81898 5.84839 5.86966 5.93942 6.06430 6.26849 6.27071 6.32836 6.41981 6.42569 6.52833 6.81917 6.97607 7.16489 7.21852 7.52388 7.63061 7.70899 7.96586 8.28344 8.51918 8.95278 9.22028 9.59716 11.07302 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018184 B = 0.002498 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.411456 B =11205.316539 C =11969.025883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.509 3.491 14 O -0.522 6.522 15 C 0.036 3.964 16 N -0.511 5.511 17 C 0.020 3.980 18 C 0.022 3.978 19 C 0.118 3.882 20 H 0.096 0.904 21 O -0.537 6.537 22 C -0.115 4.115 23 C -0.073 4.073 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.127 4.127 27 C -0.120 4.120 28 C -0.104 4.104 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.016 0.984 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.040 0.960 44 H 0.367 0.633 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.136 -8.715 22.835 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.294 3.706 14 O -0.398 6.398 15 C -0.095 4.095 16 N -0.235 5.235 17 C -0.127 4.127 18 C -0.107 4.107 19 C 0.058 3.942 20 H 0.114 0.886 21 O -0.340 6.340 22 C -0.153 4.153 23 C -0.073 4.073 24 C -0.138 4.138 25 C -0.138 4.138 26 C -0.145 4.145 27 C -0.138 4.138 28 C -0.122 4.122 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.034 0.966 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.213 0.787 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.468 -7.750 22.021 26.010 hybrid contribution 1.637 -0.948 0.185 1.901 sum -9.831 -8.697 22.206 25.796 Atomic orbital electron populations 1.22230 0.96827 1.01271 1.02462 1.21388 0.93501 0.84424 1.02390 1.48251 1.64270 1.13125 1.07717 1.19238 0.96075 0.93706 0.78125 1.21432 0.96967 1.31716 1.06170 0.92634 1.24937 0.97763 0.94984 0.96468 1.69936 1.35641 1.33460 1.14313 0.86516 0.84810 0.77642 0.78547 1.20703 1.21098 1.19982 1.20065 0.78820 0.87059 0.84638 1.90631 1.44787 1.17680 1.86733 1.22139 1.02083 0.94087 0.91217 1.61523 1.17388 1.43587 1.01005 1.22585 0.86068 0.99462 1.04625 1.22907 0.96420 0.98457 0.92891 1.21882 0.92183 0.83973 0.96178 0.88599 1.86704 1.74546 1.19290 1.53507 1.21363 0.92134 1.02675 0.99102 1.19697 0.95063 0.94311 0.98242 1.21045 0.94524 0.98069 1.00123 1.21119 0.94183 0.98725 0.99761 1.21134 0.99784 0.94151 0.99410 1.21143 0.94564 0.98120 0.99968 1.20990 0.93987 0.97722 0.99467 0.93059 0.91962 0.92287 0.90022 0.92133 0.95139 0.93868 0.92756 0.92865 0.88769 0.96576 0.88483 0.91967 0.90344 0.94166 0.78670 0.90522 0.90109 0.86242 0.86217 0.86348 0.86244 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.11 1.75 5.93 -4.04 -0.02 1.73 16 3 N -0.60 -12.95 2.46 -175.05 -0.43 -13.38 16 4 C 0.25 6.60 5.16 -5.19 -0.03 6.57 16 5 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.88 7.41 -10.99 -0.08 10.80 16 14 O -0.52 -13.46 13.88 5.55 0.08 -13.38 16 15 C 0.04 0.56 3.85 -4.98 -0.02 0.54 16 16 N -0.51 -7.63 4.35 -244.38 -1.06 -8.69 16 17 C 0.02 0.31 9.18 60.06 0.55 0.86 16 18 C 0.02 0.23 4.63 -3.83 -0.02 0.21 16 19 C 0.12 1.18 2.98 -26.73 -0.08 1.10 16 20 H 0.10 1.11 6.55 -51.93 -0.34 0.77 16 21 O -0.54 -6.46 12.72 -35.23 -0.45 -6.90 16 22 C -0.11 -0.87 5.03 -27.88 -0.14 -1.01 16 23 C -0.07 -0.67 4.97 -104.62 -0.52 -1.19 16 24 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 27 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 28 C -0.10 -0.94 9.40 -39.58 -0.37 -1.32 16 29 H 0.05 0.70 7.22 -51.93 -0.37 0.32 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.05 0.75 7.37 -51.93 -0.38 0.37 16 38 H 0.09 1.33 5.42 -51.93 -0.28 1.05 16 39 H 0.02 0.22 8.13 -51.93 -0.42 -0.20 16 40 H 0.10 1.86 5.92 -51.93 -0.31 1.56 16 41 H 0.06 0.80 7.95 -51.93 -0.41 0.38 16 42 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 43 H 0.04 0.37 8.05 -51.93 -0.42 -0.05 16 44 H 0.37 3.11 9.05 45.56 0.41 3.52 16 45 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 46 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 48 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 50 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 51 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 413.42 15.07 6.23 6.23 Total: -1.00 -35.46 413.42 -10.10 -45.56 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.84 Total: 2.94 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.35 Total: -3.20 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.76 Total: -48.27 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.37 Total: -20.29 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.46 -10.10 -45.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293195523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.478 kcal (2) G-P(sol) polarization free energy of solvation -35.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds