Wall clock time and date at job start Tue Mar 31 2020 18:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47027 * 2 1 4 4 C 1.46503 * 120.00219 * 270.00240 * 3 2 1 5 5 C 1.50704 * 109.46904 * 270.00070 * 4 3 2 6 6 H 1.08004 * 119.99696 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00000 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99796 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00139 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47090 * 89.99514 * 9 7 5 11 11 H 1.48497 * 109.47025 * 209.99702 * 9 7 5 12 12 H 1.48499 * 109.46986 * 329.99629 * 9 7 5 13 13 C 1.34777 * 119.99770 * 90.00216 * 3 2 1 14 14 O 1.21290 * 119.99921 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00094 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47305 * 180.02562 * 15 13 3 17 17 C 1.46897 * 110.99735 * 293.95407 * 16 15 13 18 18 C 1.46892 * 111.00022 * 169.99832 * 16 15 13 19 19 C 1.53004 * 109.47474 * 287.96496 * 18 16 15 20 20 H 1.08997 * 109.47060 * 58.52116 * 19 18 16 21 21 O 1.42901 * 109.46702 * 298.52216 * 19 18 16 22 22 C 1.53001 * 109.47188 * 178.52111 * 19 18 16 23 23 C 1.50697 * 109.46864 * 184.99820 * 22 19 18 24 24 C 1.38242 * 119.99864 * 90.00291 * 23 22 19 25 25 C 1.38234 * 120.00042 * 180.02562 * 24 23 22 26 26 C 1.38235 * 119.99915 * 359.97438 * 25 24 23 27 27 C 1.38238 * 120.00025 * 0.25577 * 26 25 24 28 28 C 1.38233 * 120.00288 * 270.01868 * 23 22 19 29 29 H 1.09002 * 109.47054 * 299.99716 * 1 2 3 30 30 H 1.09000 * 109.47122 * 59.99985 * 1 2 3 31 31 H 1.09003 * 109.47132 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47054 * 240.00284 * 2 1 3 33 33 H 1.09000 * 109.47122 * 120.00015 * 2 1 3 34 34 H 1.08998 * 109.46924 * 29.99649 * 4 3 2 35 35 H 1.09000 * 109.47067 * 149.99992 * 4 3 2 36 36 H 0.96991 * 119.99757 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47258 * 59.99888 * 15 13 3 38 38 H 1.09000 * 109.47153 * 299.99762 * 15 13 3 39 39 H 1.09007 * 109.47140 * 302.02816 * 17 16 15 40 40 H 1.08999 * 109.47355 * 62.03122 * 17 16 15 41 41 H 1.08994 * 109.47542 * 182.03185 * 17 16 15 42 42 H 1.09002 * 109.47119 * 167.96629 * 18 16 15 43 43 H 1.08997 * 109.47644 * 47.96841 * 18 16 15 44 44 H 0.96700 * 113.99614 * 299.99316 * 21 19 18 45 45 H 1.09004 * 109.47303 * 64.99832 * 22 19 18 46 46 H 1.08998 * 109.47005 * 305.00057 * 22 19 18 47 47 H 1.08000 * 119.99564 * 359.97438 * 24 23 22 48 48 H 1.08003 * 120.00071 * 179.97438 * 25 24 23 49 49 H 1.07999 * 119.99796 * 179.97438 * 26 25 24 50 50 H 1.07998 * 119.99938 * 179.72689 * 27 26 25 51 51 H 1.07991 * 119.99937 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1494 2.3906 -2.8774 8 7 3.3493 3.1267 -3.6175 9 14 5.9134 2.0965 -3.4171 10 1 5.9760 0.8760 -4.2607 11 1 6.3929 3.2641 -4.1993 12 1 6.7735 1.9156 -2.2202 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1673 15 6 1.9913 1.3063 2.4723 16 7 2.3091 2.2064 3.5889 17 6 3.7458 2.5101 3.6277 18 6 1.8559 1.6406 4.8665 19 6 0.3291 1.7075 4.9410 20 1 -0.1000 1.1581 4.1031 21 8 -0.0913 3.0720 4.8814 22 6 -0.1451 1.0847 6.2556 23 6 -1.6513 1.0391 6.2752 24 6 -2.3157 -0.0672 5.7796 25 6 -3.6973 -0.1090 5.7971 26 6 -4.4145 0.9554 6.3106 27 6 -3.7502 2.0637 6.8019 28 6 -2.3685 2.1035 6.7885 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6878 -2.0284 35 1 2.0955 3.1411 -1.1383 36 1 3.6754 3.5172 -4.4433 37 1 2.6211 0.4186 2.5302 38 1 0.9432 1.0125 2.5299 39 1 4.3111 1.5824 3.7166 40 1 4.0334 3.0244 2.7107 41 1 3.9591 3.1490 4.4847 42 1 2.2852 2.2120 5.6896 43 1 2.1779 0.6018 4.9385 44 1 0.2538 3.6215 5.5984 45 1 0.2111 1.6862 7.0920 46 1 0.2503 0.0726 6.3416 47 1 -1.7553 -0.8986 5.3780 48 1 -4.2165 -0.9731 5.4095 49 1 -5.4939 0.9230 6.3239 50 1 -4.3106 2.8971 7.1991 51 1 -1.8494 2.9680 7.1751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293195523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:14 Heat of formation + Delta-G solvation = -78.754846 kcal Electronic energy + Delta-G solvation = -29287.676461 eV Core-core repulsion = 25379.066666 eV Total energy + Delta-G solvation = -3908.609795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.94822 -40.26218 -38.84387 -37.16210 -36.49840 -34.90014 -33.70548 -31.68191 -31.66096 -30.74905 -30.11285 -28.32022 -27.42871 -25.10731 -24.30595 -23.75590 -23.36877 -22.13260 -21.82602 -19.86315 -18.63643 -18.20063 -17.65754 -17.39764 -17.06001 -16.74312 -16.62456 -16.20872 -15.85827 -15.78009 -15.52388 -15.37252 -14.99302 -14.66309 -14.51688 -14.24961 -14.16525 -13.92341 -13.76215 -13.50336 -13.35135 -13.28829 -13.11389 -12.87101 -12.75768 -12.66300 -12.58960 -12.50391 -12.44484 -12.15277 -11.99064 -11.84711 -11.75036 -11.70683 -11.62180 -10.94044 -10.64397 -10.43871 -9.72628 -9.47705 -9.39456 -9.14365 -8.21834 -6.37166 0.53164 0.59662 1.35046 1.38513 1.48693 1.90220 2.24560 2.41464 2.87630 3.06450 3.07566 3.67307 3.73019 3.77835 4.03209 4.04566 4.09971 4.15685 4.24357 4.29152 4.32333 4.36352 4.42755 4.47664 4.51631 4.58602 4.60197 4.67408 4.72679 4.77159 4.82100 4.92852 4.94675 4.97773 5.05106 5.14685 5.18105 5.22820 5.26580 5.28261 5.37962 5.59041 5.65373 5.70804 5.80004 5.86656 5.96631 6.07569 6.17495 6.22903 6.71378 6.85927 7.05130 7.29450 7.57592 8.85242 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018184 B = 0.002498 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.411456 B =11205.316539 C =11969.025883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.608 5.608 4 C 0.264 3.736 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.496 3.504 14 O -0.579 6.579 15 C 0.052 3.948 16 N -0.536 5.536 17 C 0.027 3.973 18 C 0.026 3.974 19 C 0.122 3.878 20 H 0.080 0.920 21 O -0.565 6.565 22 C -0.103 4.103 23 C -0.086 4.086 24 C -0.133 4.133 25 C -0.133 4.133 26 C -0.139 4.139 27 C -0.135 4.135 28 C -0.119 4.119 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.019 0.981 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.031 0.969 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.380 0.620 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.133 0.867 50 H 0.132 0.868 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.673 -11.287 24.887 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.284 3.716 14 O -0.458 6.458 15 C -0.078 4.078 16 N -0.260 5.260 17 C -0.121 4.121 18 C -0.101 4.101 19 C 0.062 3.938 20 H 0.098 0.902 21 O -0.371 6.371 22 C -0.141 4.141 23 C -0.086 4.086 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.157 4.157 27 C -0.153 4.153 28 C -0.137 4.137 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.037 0.963 35 H 0.010 0.990 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.082 0.918 44 H 0.228 0.772 45 H 0.111 0.889 46 H 0.117 0.883 47 H 0.152 0.848 48 H 0.153 0.847 49 H 0.151 0.849 50 H 0.150 0.850 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.031 -10.373 24.107 28.468 hybrid contribution 1.409 -0.110 -0.425 1.476 sum -9.622 -10.484 23.682 27.629 Atomic orbital electron populations 1.22155 0.94803 1.03472 1.01448 1.21724 0.95135 0.81465 1.03826 1.48302 1.64402 1.15079 1.06214 1.18648 0.95274 0.91328 0.80467 1.21684 0.97754 1.31857 1.06455 0.92895 1.25901 1.02515 0.94476 0.96478 1.70067 1.37860 1.34262 1.14798 0.85391 0.78852 0.78198 0.78212 1.18707 1.20695 1.19699 1.21211 0.77352 0.86725 0.86313 1.90605 1.47121 1.20378 1.87716 1.22005 1.03734 0.93952 0.88134 1.61425 1.17225 1.44702 1.02689 1.22420 0.86720 1.00080 1.02913 1.22991 0.96468 0.99843 0.90832 1.21856 0.91833 0.83138 0.96973 0.90211 1.86663 1.75161 1.20631 1.54684 1.21273 0.91035 1.03712 0.98065 1.19945 0.96058 0.94329 0.98249 1.21338 0.94890 0.98647 1.00167 1.21420 0.94527 0.99338 0.99757 1.21425 1.00785 0.94199 0.99332 1.21426 0.94925 0.98764 1.00197 1.21248 0.94347 0.98289 0.99786 0.92601 0.94466 0.88375 0.90897 0.88309 0.96312 0.98987 0.92441 0.90320 0.86717 0.95027 0.93458 0.89897 0.88467 0.91840 0.77169 0.88948 0.88350 0.84782 0.84706 0.84894 0.85047 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 10.24 71.98 0.74 -3.45 16 2 C 0.10 3.15 5.93 86.38 0.51 3.66 16 3 N -0.61 -26.78 2.46 -826.13 -2.03 -28.81 16 4 C 0.26 14.86 5.16 85.63 0.44 15.30 16 5 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 7 C 0.00 0.29 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 9 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.50 21.61 7.41 87.66 0.65 22.26 16 14 O -0.58 -31.45 13.88 -3.06 -0.04 -31.49 16 15 C 0.05 1.55 3.85 85.55 0.33 1.88 16 16 N -0.54 -15.06 4.35 -927.07 -4.03 -19.09 16 17 C 0.03 0.77 9.18 127.69 1.17 1.95 16 18 C 0.03 0.45 4.63 86.31 0.40 0.85 16 19 C 0.12 2.12 2.98 30.60 0.09 2.21 16 20 H 0.08 1.64 6.55 -2.39 -0.02 1.62 16 21 O -0.57 -12.80 12.72 -148.98 -1.90 -14.70 16 22 C -0.10 -1.22 5.03 29.85 0.15 -1.07 16 23 C -0.09 -1.39 4.97 -19.87 -0.10 -1.49 16 24 C -0.13 -2.12 9.70 22.27 0.22 -1.91 16 25 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 26 C -0.14 -2.25 10.05 22.27 0.22 -2.03 16 27 C -0.14 -2.26 10.05 22.27 0.22 -2.04 16 28 C -0.12 -2.01 9.40 22.27 0.21 -1.80 16 29 H 0.05 1.41 7.22 -2.39 -0.02 1.39 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 2.40 8.07 -2.39 -0.02 2.39 16 33 H 0.10 2.34 6.44 -2.39 -0.02 2.32 16 34 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 35 H -0.01 -0.53 7.42 -2.39 -0.02 -0.54 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.08 1.94 7.37 -2.39 -0.02 1.92 16 38 H 0.12 2.92 5.42 -2.39 -0.01 2.91 16 39 H 0.03 0.80 8.13 -2.38 -0.02 0.78 16 40 H 0.05 1.87 5.92 -2.39 -0.01 1.86 16 41 H 0.08 1.99 7.95 -2.39 -0.02 1.98 16 42 H 0.10 1.34 7.87 -2.39 -0.02 1.32 16 43 H 0.06 0.85 8.05 -2.39 -0.02 0.83 16 44 H 0.38 5.87 9.05 -74.06 -0.67 5.20 16 45 H 0.09 0.82 8.09 -2.39 -0.02 0.80 16 46 H 0.10 0.84 8.09 -2.39 -0.02 0.82 16 47 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 48 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 49 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 50 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 51 H 0.13 1.80 8.06 -2.92 -0.02 1.77 16 Total: -1.00 -82.46 413.42 0.73 -81.72 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.24 Total: 20.54 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 6.18 Total: 1.59 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -5.78 Total: -105.39 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -1.94 Total: -46.19 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -82.46 0.73 -81.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293195523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.970 kcal (2) G-P(sol) polarization free energy of solvation -82.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds