Wall clock time and date at job start Tue Mar 31 2020 19:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46979 * 2 1 4 4 C 1.46500 * 119.99603 * 269.99728 * 3 2 1 5 5 C 1.34772 * 120.00348 * 89.99698 * 3 2 1 6 6 O 1.21278 * 120.00031 * 0.02562 * 5 3 2 7 7 C 1.50704 * 120.00117 * 179.97438 * 5 3 2 8 8 H 1.08995 * 109.46975 * 59.99947 * 7 5 3 9 9 N 1.46900 * 109.47064 * 180.02562 * 7 5 3 10 10 C 1.46898 * 110.99992 * 224.54438 * 9 7 5 11 11 C 1.50705 * 109.47251 * 175.53503 * 10 9 7 12 12 C 1.38296 * 119.93174 * 269.73085 * 11 10 9 13 13 C 1.38101 * 120.06942 * 179.72359 * 12 11 10 14 14 C 1.38876 * 119.92565 * 0.56740 * 13 12 11 15 15 O 1.35754 * 120.06807 * 179.68132 * 14 13 12 16 16 C 1.34827 * 117.00251 * 185.85219 * 15 14 13 17 17 H 1.07997 * 119.99841 * 5.00378 * 16 15 14 18 18 C 1.38653 * 119.99673 * 185.00782 * 16 15 14 19 19 N 1.31555 * 120.00734 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99510 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47474 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47027 * 120.00111 * 20 18 16 23 23 H 1.48503 * 109.47042 * 239.99654 * 20 18 16 24 24 C 1.38878 * 119.86771 * 359.70554 * 14 13 12 25 25 C 1.38106 * 119.92535 * 359.97438 * 24 14 13 26 26 C 1.53001 * 109.47035 * 300.00225 * 7 5 3 27 27 C 1.52998 * 109.47050 * 301.83799 * 26 7 5 28 28 C 1.53000 * 109.47092 * 181.84327 * 26 7 5 29 29 H 1.09001 * 109.46823 * 60.00221 * 1 2 3 30 30 H 1.08996 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47353 * 300.00611 * 1 2 3 32 32 H 1.08990 * 109.47262 * 239.99796 * 2 1 3 33 33 H 1.08999 * 109.47100 * 119.99312 * 2 1 3 34 34 H 1.09002 * 109.46948 * 270.00004 * 4 3 2 35 35 H 1.09000 * 109.47348 * 29.99928 * 4 3 2 36 36 H 1.09003 * 109.47184 * 150.00404 * 4 3 2 37 37 H 1.00901 * 110.99839 * 100.59618 * 9 7 5 38 38 H 1.09004 * 109.47189 * 295.53571 * 10 9 7 39 39 H 1.08998 * 109.46883 * 55.53680 * 10 9 7 40 40 H 1.08003 * 119.96193 * 359.97438 * 12 11 10 41 41 H 1.07999 * 120.03222 * 180.27362 * 13 12 11 42 42 H 0.96991 * 120.00519 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.03638 * 179.97438 * 24 14 13 44 44 H 1.08002 * 119.96171 * 180.02562 * 25 24 14 45 45 H 1.09002 * 109.47321 * 61.83905 * 26 7 5 46 46 H 1.09000 * 109.47820 * 300.00514 * 27 26 7 47 47 H 1.09005 * 109.47149 * 60.00166 * 27 26 7 48 48 H 1.09000 * 109.47495 * 179.97438 * 27 26 7 49 49 H 1.08998 * 109.47107 * 181.08715 * 28 26 7 50 50 H 1.09004 * 109.46949 * 301.07765 * 28 26 7 51 51 H 1.08997 * 109.47168 * 61.07858 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 2.2429 2.0167 1.1671 6 8 2.0412 1.4449 2.2175 7 6 2.7457 3.4373 1.1671 8 1 2.0282 4.0767 0.6530 9 7 2.9094 3.8989 2.5520 10 6 2.3686 5.2540 2.7227 11 6 2.4541 5.6499 4.1743 12 6 1.4002 5.3771 5.0272 13 6 1.4779 5.7335 6.3592 14 6 2.6110 6.3771 6.8392 15 8 2.6877 6.7346 8.1466 16 6 3.7596 7.4620 8.5204 17 1 4.4663 7.8029 7.7783 18 6 3.9545 7.7725 9.8576 19 7 3.0940 7.3568 10.7617 20 14 5.4400 8.7797 10.3756 21 1 6.2488 9.1211 9.1778 22 1 4.9848 10.0288 11.0372 23 1 6.2670 7.9906 11.3235 24 6 3.6653 6.6548 5.9789 25 6 3.5842 6.2899 4.6494 26 6 4.0937 3.5012 0.4461 27 6 5.0881 2.5685 1.1404 28 6 4.6261 4.9350 0.4861 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.2920 1.9005 -1.5834 35 1 1.5817 1.6876 -2.0284 36 1 2.0956 3.1410 -1.1385 37 1 3.8770 3.8575 2.8350 38 1 2.9470 5.9546 2.1203 39 1 1.3271 5.2726 2.4018 40 1 0.5172 4.8811 4.6521 41 1 0.6564 5.5161 7.0257 42 1 3.2302 7.5743 11.6971 43 1 4.5477 7.1557 6.3492 44 1 4.4040 6.5052 3.9800 45 1 3.9664 3.1896 -0.5907 46 1 5.2155 2.8799 2.1772 47 1 4.7089 1.5469 1.1120 48 1 6.0483 2.6136 0.6266 49 1 5.5771 4.9844 -0.0442 50 1 3.9087 5.6024 0.0083 51 1 4.7716 5.2398 1.5224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296311666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:07 Heat of formation + Delta-G solvation = -31.704657 kcal Electronic energy + Delta-G solvation = -29137.117186 eV Core-core repulsion = 25230.547641 eV Total energy + Delta-G solvation = -3906.569546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.55319 -39.00161 -37.64809 -36.39789 -35.92586 -33.34723 -32.17730 -31.55067 -30.11265 -29.58685 -27.62810 -27.05702 -26.80964 -25.39838 -23.93947 -23.03819 -21.87936 -20.62167 -20.39211 -19.19602 -17.93373 -17.22024 -16.83594 -16.53169 -16.36204 -15.54582 -14.95857 -14.77040 -14.51398 -14.37644 -14.06519 -13.78219 -13.75052 -13.59361 -13.52335 -13.38635 -13.00204 -12.90885 -12.78584 -12.62282 -12.57213 -12.37956 -12.25885 -12.17823 -11.88953 -11.54144 -11.44782 -11.29098 -11.24954 -11.14269 -10.98412 -10.74600 -10.55194 -10.54888 -10.37375 -9.67533 -9.30584 -8.86879 -8.80011 -8.24407 -8.09116 -7.12557 -6.41309 -3.99861 2.29504 2.33017 2.65571 2.78478 3.14341 3.15490 3.21160 3.99532 4.16909 4.33302 4.46632 4.56727 4.64067 4.74036 4.79497 4.87055 4.99621 5.08243 5.13589 5.15699 5.15839 5.19632 5.29739 5.33861 5.36013 5.41305 5.43812 5.45451 5.57793 5.59823 5.69779 5.72956 5.78612 5.81841 5.93595 5.94585 5.98137 6.04354 6.28402 6.32479 6.49970 6.77413 6.92674 6.99265 7.11702 7.25628 7.32261 7.40840 7.49041 7.53061 7.90024 8.03952 8.23619 9.04435 9.76069 10.77008 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002268 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.878996 B =12343.602045 C =13052.259283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.627 5.627 4 C 0.078 3.922 5 C 0.518 3.482 6 O -0.506 6.506 7 C 0.075 3.925 8 H 0.093 0.907 9 N -0.659 5.659 10 C 0.118 3.882 11 C -0.182 4.182 12 C -0.049 4.049 13 C -0.194 4.194 14 C 0.156 3.844 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.235 4.235 25 C -0.066 4.066 26 C -0.127 4.127 27 C -0.150 4.150 28 C -0.152 4.152 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.349 0.651 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.269 0.731 43 H 0.125 0.875 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.057 0.943 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.752 -9.069 -27.623 29.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.364 5.364 4 C -0.066 4.066 5 C 0.305 3.695 6 O -0.378 6.378 7 C -0.039 4.039 8 H 0.111 0.889 9 N -0.293 5.293 10 C -0.010 4.010 11 C -0.183 4.183 12 C -0.068 4.068 13 C -0.213 4.213 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.254 4.254 25 C -0.084 4.084 26 C -0.146 4.146 27 C -0.207 4.207 28 C -0.209 4.209 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.171 0.829 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.106 0.894 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.096 -9.697 -26.330 28.059 hybrid contribution 1.442 1.003 -0.311 1.784 sum 1.346 -8.694 -26.641 28.056 Atomic orbital electron populations 1.22128 0.96050 1.02095 1.02319 1.21356 0.94333 0.82467 1.02853 1.47953 1.67861 1.14305 1.06236 1.21906 1.00961 0.97815 0.85879 1.20778 0.77238 0.88517 0.82984 1.90714 1.49480 1.66845 1.30747 1.21515 0.97013 0.93828 0.91545 0.88916 1.60161 1.25640 1.25186 1.18270 1.20789 0.99200 0.87260 0.93756 1.19050 0.96679 1.07896 0.94694 1.20466 0.97417 0.96671 0.92197 1.20219 0.98128 1.07303 0.95665 1.19410 0.93048 0.91873 0.85415 1.83995 1.43297 1.61847 1.19084 1.21354 1.02497 1.29661 0.93114 0.89110 1.25287 0.98807 0.97928 0.94587 1.70046 1.34812 1.43185 1.01740 0.85657 0.79855 0.78924 0.79030 1.19154 1.20181 1.20163 1.21105 1.00750 1.09557 0.93981 1.20554 0.96081 0.97067 0.94733 1.21942 0.94756 0.96962 1.00975 1.21847 0.98573 0.99174 1.01109 1.21943 1.01194 0.95150 1.02657 0.92821 0.91753 0.92046 0.90959 0.89927 0.92430 0.91329 0.90966 0.82903 0.94929 0.91341 0.87117 0.86606 0.92105 0.85693 0.88039 0.89424 0.91842 0.92552 0.92266 0.92056 0.92384 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 37.16 0.38 -0.92 16 2 C 0.11 0.91 6.13 -4.04 -0.02 0.89 16 3 N -0.63 -5.49 2.87 -181.57 -0.52 -6.01 16 4 C 0.08 0.39 8.80 59.85 0.53 0.92 16 5 C 0.52 6.33 5.79 -10.99 -0.06 6.26 16 6 O -0.51 -8.61 16.01 5.56 0.09 -8.53 16 7 C 0.08 0.78 1.60 -68.86 -0.11 0.67 16 8 H 0.09 0.84 6.79 -51.93 -0.35 0.49 16 9 N -0.66 -8.83 5.49 -109.22 -0.60 -9.43 16 10 C 0.12 1.59 5.17 -4.97 -0.03 1.56 16 11 C -0.18 -3.17 5.44 -104.58 -0.57 -3.74 16 12 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 13 C -0.19 -4.31 9.99 -39.40 -0.39 -4.70 16 14 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 15 O -0.18 -5.23 9.76 0.05 0.00 -5.23 16 16 C -0.39 -11.09 9.45 30.89 0.29 -10.80 16 17 H 0.09 2.39 5.29 -52.49 -0.28 2.11 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 20 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 C -0.23 -5.19 9.13 -39.39 -0.36 -5.55 16 25 C -0.07 -1.20 9.69 -39.61 -0.38 -1.59 16 26 C -0.13 -0.98 2.38 -90.62 -0.22 -1.20 16 27 C -0.15 -1.35 8.74 37.16 0.32 -1.02 16 28 C -0.15 -1.13 8.00 37.16 0.30 -0.83 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.08 0.84 7.42 -51.93 -0.39 0.45 16 34 H 0.06 0.23 6.99 -51.93 -0.36 -0.13 16 35 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 36 H 0.07 0.32 5.99 -51.93 -0.31 0.01 16 37 H 0.35 4.72 5.56 -39.29 -0.22 4.50 16 38 H 0.03 0.38 6.34 -51.93 -0.33 0.05 16 39 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 40 H 0.11 1.90 8.06 -52.48 -0.42 1.47 16 41 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.13 2.77 5.71 -52.49 -0.30 2.47 16 44 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.09 0.52 4.58 -51.93 -0.24 0.28 16 46 H 0.06 0.67 6.37 -51.93 -0.33 0.34 16 47 H 0.06 0.58 7.16 -51.93 -0.37 0.20 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 51 H 0.06 0.55 6.14 -51.93 -0.32 0.23 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -34.15 400.78 -8.31 -42.45 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.99 Total: 6.68 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -1.06 Total: -16.77 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.36 Total: -40.44 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.15 -8.31 -42.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296311666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.749 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds