Wall clock time and date at job start Tue Mar 31 2020 19:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46979 * 2 1 4 4 C 1.46500 * 119.99603 * 269.99728 * 3 2 1 5 5 C 1.34772 * 120.00348 * 89.99698 * 3 2 1 6 6 O 1.21278 * 120.00031 * 0.02562 * 5 3 2 7 7 C 1.50704 * 120.00117 * 179.97438 * 5 3 2 8 8 H 1.08995 * 109.46975 * 59.99947 * 7 5 3 9 9 N 1.46900 * 109.47064 * 180.02562 * 7 5 3 10 10 C 1.46898 * 110.99992 * 224.54438 * 9 7 5 11 11 C 1.50705 * 109.47251 * 175.53503 * 10 9 7 12 12 C 1.38296 * 119.93174 * 269.73085 * 11 10 9 13 13 C 1.38101 * 120.06942 * 179.72359 * 12 11 10 14 14 C 1.38876 * 119.92565 * 0.56740 * 13 12 11 15 15 O 1.35754 * 120.06807 * 179.68132 * 14 13 12 16 16 C 1.34827 * 117.00251 * 185.85219 * 15 14 13 17 17 H 1.07997 * 119.99841 * 5.00378 * 16 15 14 18 18 C 1.38653 * 119.99673 * 185.00782 * 16 15 14 19 19 N 1.31555 * 120.00734 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99510 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47474 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47027 * 120.00111 * 20 18 16 23 23 H 1.48503 * 109.47042 * 239.99654 * 20 18 16 24 24 C 1.38878 * 119.86771 * 359.70554 * 14 13 12 25 25 C 1.38106 * 119.92535 * 359.97438 * 24 14 13 26 26 C 1.53001 * 109.47035 * 300.00225 * 7 5 3 27 27 C 1.52998 * 109.47050 * 301.83799 * 26 7 5 28 28 C 1.53000 * 109.47092 * 181.84327 * 26 7 5 29 29 H 1.09001 * 109.46823 * 60.00221 * 1 2 3 30 30 H 1.08996 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47353 * 300.00611 * 1 2 3 32 32 H 1.08990 * 109.47262 * 239.99796 * 2 1 3 33 33 H 1.08999 * 109.47100 * 119.99312 * 2 1 3 34 34 H 1.09002 * 109.46948 * 270.00004 * 4 3 2 35 35 H 1.09000 * 109.47348 * 29.99928 * 4 3 2 36 36 H 1.09003 * 109.47184 * 150.00404 * 4 3 2 37 37 H 1.00901 * 110.99839 * 100.59618 * 9 7 5 38 38 H 1.09004 * 109.47189 * 295.53571 * 10 9 7 39 39 H 1.08998 * 109.46883 * 55.53680 * 10 9 7 40 40 H 1.08003 * 119.96193 * 359.97438 * 12 11 10 41 41 H 1.07999 * 120.03222 * 180.27362 * 13 12 11 42 42 H 0.96991 * 120.00519 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.03638 * 179.97438 * 24 14 13 44 44 H 1.08002 * 119.96171 * 180.02562 * 25 24 14 45 45 H 1.09002 * 109.47321 * 61.83905 * 26 7 5 46 46 H 1.09000 * 109.47820 * 300.00514 * 27 26 7 47 47 H 1.09005 * 109.47149 * 60.00166 * 27 26 7 48 48 H 1.09000 * 109.47495 * 179.97438 * 27 26 7 49 49 H 1.08998 * 109.47107 * 181.08715 * 28 26 7 50 50 H 1.09004 * 109.46949 * 301.07765 * 28 26 7 51 51 H 1.08997 * 109.47168 * 61.07858 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 2.2429 2.0167 1.1671 6 8 2.0412 1.4449 2.2175 7 6 2.7457 3.4373 1.1671 8 1 2.0282 4.0767 0.6530 9 7 2.9094 3.8989 2.5520 10 6 2.3686 5.2540 2.7227 11 6 2.4541 5.6499 4.1743 12 6 1.4002 5.3771 5.0272 13 6 1.4779 5.7335 6.3592 14 6 2.6110 6.3771 6.8392 15 8 2.6877 6.7346 8.1466 16 6 3.7596 7.4620 8.5204 17 1 4.4663 7.8029 7.7783 18 6 3.9545 7.7725 9.8576 19 7 3.0940 7.3568 10.7617 20 14 5.4400 8.7797 10.3756 21 1 6.2488 9.1211 9.1778 22 1 4.9848 10.0288 11.0372 23 1 6.2670 7.9906 11.3235 24 6 3.6653 6.6548 5.9789 25 6 3.5842 6.2899 4.6494 26 6 4.0937 3.5012 0.4461 27 6 5.0881 2.5685 1.1404 28 6 4.6261 4.9350 0.4861 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.2920 1.9005 -1.5834 35 1 1.5817 1.6876 -2.0284 36 1 2.0956 3.1410 -1.1385 37 1 3.8770 3.8575 2.8350 38 1 2.9470 5.9546 2.1203 39 1 1.3271 5.2726 2.4018 40 1 0.5172 4.8811 4.6521 41 1 0.6564 5.5161 7.0257 42 1 3.2302 7.5743 11.6971 43 1 4.5477 7.1557 6.3492 44 1 4.4040 6.5052 3.9800 45 1 3.9664 3.1896 -0.5907 46 1 5.2155 2.8799 2.1772 47 1 4.7089 1.5469 1.1120 48 1 6.0483 2.6136 0.6266 49 1 5.5771 4.9844 -0.0442 50 1 3.9087 5.6024 0.0083 51 1 4.7716 5.2398 1.5224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296311666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:06 Heat of formation + Delta-G solvation = -54.510664 kcal Electronic energy + Delta-G solvation = -29138.106129 eV Core-core repulsion = 25230.547641 eV Total energy + Delta-G solvation = -3907.558488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.39417 -40.73819 -38.84662 -37.81268 -36.75891 -34.60648 -34.00379 -32.18468 -31.78233 -30.94409 -28.39878 -27.92469 -27.51055 -27.22035 -25.18206 -23.80995 -23.57649 -21.97845 -21.29875 -19.99149 -19.81665 -18.88252 -17.84967 -17.44042 -17.16600 -16.48404 -16.34648 -16.25353 -15.82823 -15.58313 -15.44661 -15.21845 -14.99093 -14.52622 -14.49880 -14.38756 -14.28093 -13.98737 -13.78517 -13.66068 -13.42721 -13.38702 -13.18370 -12.98006 -12.96715 -12.82576 -12.75105 -12.45794 -12.27596 -12.18022 -12.10272 -12.07548 -11.93219 -11.76433 -11.51534 -11.18898 -10.80168 -10.61727 -9.76452 -9.57643 -9.20758 -8.89309 -8.47001 -6.15191 0.61635 0.68305 1.34433 1.43316 1.53407 1.78971 2.07875 2.17682 2.80031 3.12447 3.47710 3.52189 3.62857 3.78032 3.88881 4.04952 4.09914 4.11426 4.23865 4.25353 4.32336 4.33584 4.42702 4.54183 4.56279 4.59870 4.64090 4.70012 4.74742 4.76313 4.82407 4.84782 4.92423 4.96112 5.00767 5.04300 5.10048 5.14624 5.16373 5.29083 5.31515 5.33331 5.42397 5.57730 5.68254 5.72177 5.82531 6.03138 6.04402 6.25479 6.41772 6.56721 6.97572 7.39951 7.79659 8.76932 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002268 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.878996 B =12343.602045 C =13052.259283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.108 3.892 3 N -0.620 5.620 4 C 0.067 3.933 5 C 0.511 3.489 6 O -0.570 6.570 7 C 0.079 3.921 8 H 0.114 0.886 9 N -0.682 5.682 10 C 0.123 3.877 11 C -0.156 4.156 12 C -0.050 4.050 13 C -0.209 4.209 14 C 0.114 3.886 15 O -0.235 6.235 16 C -0.411 4.411 17 H 0.102 0.898 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.021 2.979 21 H -0.249 1.249 22 H -0.268 1.268 23 H -0.269 1.269 24 C -0.241 4.241 25 C -0.059 4.059 26 C -0.116 4.116 27 C -0.148 4.148 28 C -0.151 4.151 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.346 0.654 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.107 0.893 42 H 0.272 0.728 43 H 0.120 0.880 44 H 0.143 0.857 45 H 0.115 0.885 46 H 0.043 0.957 47 H 0.037 0.963 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -8.539 -32.860 34.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.014 4.014 3 N -0.355 5.355 4 C -0.075 4.075 5 C 0.299 3.701 6 O -0.447 6.447 7 C -0.035 4.035 8 H 0.132 0.868 9 N -0.316 5.316 10 C -0.004 4.004 11 C -0.157 4.157 12 C -0.069 4.069 13 C -0.228 4.228 14 C 0.064 3.936 15 O -0.142 6.142 16 C -0.487 4.487 17 H 0.120 0.880 18 C -0.223 4.223 19 N -0.561 5.561 20 Si 0.840 3.160 21 H -0.173 1.173 22 H -0.193 1.193 23 H -0.194 1.194 24 C -0.261 4.261 25 C -0.077 4.077 26 C -0.135 4.135 27 C -0.206 4.206 28 C -0.208 4.208 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.168 0.832 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.152 0.848 41 H 0.125 0.875 42 H 0.081 0.919 43 H 0.138 0.862 44 H 0.161 0.839 45 H 0.133 0.867 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.358 -9.182 -31.691 33.022 hybrid contribution 0.872 0.632 0.925 1.419 sum 2.230 -8.550 -30.766 32.010 Atomic orbital electron populations 1.22067 0.95746 1.02694 1.01415 1.21451 0.94566 0.82403 1.03010 1.48039 1.66263 1.14441 1.06776 1.22233 1.02647 0.98305 0.84306 1.21222 0.76588 0.89230 0.83030 1.90689 1.52542 1.68337 1.33140 1.21579 0.98945 0.92760 0.90210 0.86803 1.59979 1.25681 1.24908 1.21008 1.20791 1.00684 0.88208 0.90739 1.19625 0.94949 1.04287 0.96827 1.20803 0.99000 0.96094 0.90975 1.20424 0.97481 1.07687 0.97204 1.19923 0.95028 0.93830 0.84863 1.83954 1.44567 1.64196 1.21446 1.21864 1.02694 1.30191 0.93984 0.88032 1.26644 1.02317 0.99180 0.94194 1.70199 1.37708 1.45982 1.02253 0.84501 0.75443 0.77018 0.79035 1.17263 1.19277 1.19434 1.21241 0.99785 1.09658 0.95379 1.20951 0.97506 0.95692 0.93545 1.21910 0.92615 0.97276 1.01713 1.21830 0.99889 0.98439 1.00411 1.21939 1.02283 0.94577 1.02018 0.91056 0.90552 0.95376 0.87653 0.92856 0.90731 0.89199 0.89778 0.83168 0.91864 0.90186 0.84834 0.87476 0.91874 0.86248 0.83909 0.86722 0.93831 0.94337 0.90533 0.90790 0.90966 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.24 71.98 0.74 -1.55 16 2 C 0.11 1.59 6.13 86.38 0.53 2.12 16 3 N -0.62 -9.36 2.87 -846.76 -2.43 -11.79 16 4 C 0.07 0.37 8.80 127.77 1.12 1.49 16 5 C 0.51 11.76 5.79 87.66 0.51 12.27 16 6 O -0.57 -19.79 16.01 -3.02 -0.05 -19.84 16 7 C 0.08 1.37 1.60 44.17 0.07 1.44 16 8 H 0.11 1.52 6.79 -2.39 -0.02 1.50 16 9 N -0.68 -16.61 5.49 -499.45 -2.74 -19.35 16 10 C 0.12 2.85 5.17 85.56 0.44 3.29 16 11 C -0.16 -5.07 5.44 -19.84 -0.11 -5.18 16 12 C -0.05 -1.88 9.69 22.25 0.22 -1.67 16 13 C -0.21 -9.67 9.99 22.39 0.22 -9.45 16 14 C 0.11 5.97 6.65 22.58 0.15 6.12 16 15 O -0.23 -14.74 9.76 -22.75 -0.22 -14.96 16 16 C -0.41 -24.63 9.45 67.92 0.64 -23.99 16 17 H 0.10 5.56 5.29 -2.91 -0.02 5.55 16 18 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 19 N -0.92 -58.32 13.67 21.61 0.30 -58.03 16 20 Si 1.02 43.81 29.55 68.60 2.03 45.84 16 21 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 C -0.24 -10.81 9.13 22.39 0.20 -10.60 16 25 C -0.06 -2.03 9.69 22.25 0.22 -1.81 16 26 C -0.12 -1.34 2.38 -10.79 -0.03 -1.37 16 27 C -0.15 -2.35 8.74 71.98 0.63 -1.72 16 28 C -0.15 -1.52 8.00 71.98 0.58 -0.94 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.11 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.05 1.11 7.42 -2.39 -0.02 1.09 16 34 H 0.07 0.22 6.99 -2.39 -0.02 0.20 16 35 H 0.09 0.18 8.07 -2.39 -0.02 0.16 16 36 H 0.08 0.30 5.99 -2.39 -0.01 0.29 16 37 H 0.35 8.67 5.56 -89.69 -0.50 8.17 16 38 H 0.06 1.13 6.34 -2.38 -0.02 1.12 16 39 H 0.08 1.73 7.95 -2.39 -0.02 1.71 16 40 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 41 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 42 H 0.27 15.69 8.31 -92.72 -0.77 14.92 16 43 H 0.12 5.39 5.71 -2.91 -0.02 5.38 16 44 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 45 H 0.11 0.75 4.58 -2.39 -0.01 0.73 16 46 H 0.04 0.86 6.37 -2.39 -0.02 0.85 16 47 H 0.04 0.74 7.16 -2.38 -0.02 0.72 16 48 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 49 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.07 0.55 8.12 -2.38 -0.02 0.53 16 51 H 0.05 0.62 6.14 -2.39 -0.01 0.61 16 Total: -1.00 -83.34 400.78 3.91 -79.43 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.44 Total: 31.30 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 6.60 Total: -32.61 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -4.88 Total: -89.17 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.27 Total: -34.79 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -83.34 3.91 -79.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296311666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.917 kcal (2) G-P(sol) polarization free energy of solvation -83.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds