Wall clock time and date at job start Tue Mar 31 2020 18:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46632 * 2 1 4 4 C 1.46496 * 120.00037 * 269.99382 * 3 2 1 5 5 C 1.50698 * 109.47356 * 270.00269 * 4 3 2 6 6 H 1.08001 * 119.99962 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00088 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99641 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99804 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47186 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46755 * 120.00477 * 9 7 5 12 12 H 1.48504 * 109.46918 * 239.99979 * 9 7 5 13 13 C 1.34780 * 120.00036 * 90.00233 * 3 2 1 14 14 O 1.21280 * 120.00144 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99927 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.47360 * 180.02562 * 15 13 3 17 17 C 1.46908 * 110.99591 * 293.95134 * 16 15 13 18 18 C 1.46900 * 111.00268 * 169.99988 * 16 15 13 19 19 C 1.52995 * 109.46922 * 189.99721 * 18 16 15 20 20 C 1.53001 * 109.47181 * 179.97438 * 19 18 16 21 21 O 1.42902 * 109.47386 * 180.02562 * 20 19 18 22 22 C 1.35898 * 116.99694 * 180.02562 * 21 20 19 23 23 C 1.38735 * 120.05254 * 179.97438 * 22 21 20 24 24 C 1.38144 * 119.94607 * 179.97438 * 23 22 21 25 25 C 1.38266 * 120.05233 * 0.02562 * 24 23 22 26 26 C 1.38269 * 120.11595 * 359.95530 * 25 24 23 27 27 C 1.38142 * 120.04935 * 0.04230 * 26 25 24 28 28 H 1.09006 * 109.47372 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47563 * 299.99707 * 1 2 3 30 30 H 1.09000 * 109.47129 * 59.99971 * 1 2 3 31 31 H 1.08994 * 109.46952 * 239.99993 * 2 1 3 32 32 H 1.08997 * 109.46696 * 119.99407 * 2 1 3 33 33 H 1.09000 * 109.46989 * 30.00622 * 4 3 2 34 34 H 1.09009 * 109.47100 * 150.00843 * 4 3 2 35 35 H 0.97005 * 119.99667 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47377 * 60.00149 * 15 13 3 37 37 H 1.09000 * 109.47383 * 299.99877 * 15 13 3 38 38 H 1.09000 * 109.47130 * 296.04910 * 17 16 15 39 39 H 1.08997 * 109.46980 * 56.04450 * 17 16 15 40 40 H 1.09001 * 109.47146 * 176.04472 * 17 16 15 41 41 H 1.08999 * 109.47137 * 69.99531 * 18 16 15 42 42 H 1.08993 * 109.46842 * 309.99555 * 18 16 15 43 43 H 1.08999 * 109.47370 * 59.99952 * 19 18 16 44 44 H 1.09006 * 109.47017 * 299.99794 * 19 18 16 45 45 H 1.08999 * 109.46920 * 59.99785 * 20 19 18 46 46 H 1.08998 * 109.47220 * 300.00155 * 20 19 18 47 47 H 1.08002 * 120.02704 * 359.70561 * 23 22 21 48 48 H 1.08001 * 119.97447 * 179.97438 * 24 23 22 49 49 H 1.08000 * 119.94089 * 179.97438 * 25 24 23 50 50 H 1.07992 * 119.97577 * 180.02562 * 26 25 24 51 51 H 1.08005 * 120.02748 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7036 6 1 4.3426 1.2303 -1.0960 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6180 9 14 5.9132 2.0957 -3.4173 10 1 6.6004 1.2398 -2.4173 11 1 5.9202 1.4165 -4.7380 12 1 6.6209 3.3967 -3.5261 13 6 2.2428 2.0166 1.1672 14 8 2.6474 3.1599 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2065 3.5889 17 6 3.7457 2.5103 3.6277 18 6 1.8558 1.6407 4.8666 19 6 1.9743 2.7001 5.9641 20 6 1.5018 2.1111 7.2947 21 8 1.6119 3.1007 8.3197 22 6 1.2303 2.7368 9.5722 23 6 1.3113 3.6478 10.6154 24 6 0.9223 3.2756 11.8877 25 6 0.4530 1.9963 12.1218 26 6 0.3709 1.0866 11.0837 27 6 0.7586 1.4540 9.8098 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.6752 3.5162 -4.4439 36 1 2.6211 0.4187 2.5302 37 1 0.9432 1.0125 2.5299 38 1 4.3054 1.5956 3.8229 39 1 4.0548 2.9278 2.6695 40 1 3.9430 3.2330 4.4195 41 1 2.4748 0.7810 5.1232 42 1 0.8162 1.3260 4.7762 43 1 1.3553 3.5599 5.7076 44 1 3.0140 3.0149 6.0544 45 1 2.1204 1.2512 7.5515 46 1 0.4621 1.7966 7.2041 47 1 1.6823 4.6457 10.4339 48 1 0.9856 3.9843 12.7002 49 1 0.1497 1.7072 13.1172 50 1 0.0036 0.0881 11.2691 51 1 0.6947 0.7430 8.9992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298742297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:09 Heat of formation + Delta-G solvation = -41.465881 kcal Electronic energy + Delta-G solvation = -27948.872618 eV Core-core repulsion = 24041.879794 eV Total energy + Delta-G solvation = -3906.992824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.41617 -39.36218 -37.92793 -36.99909 -35.19086 -32.96479 -32.63547 -31.31344 -30.12009 -29.99915 -28.58866 -26.88515 -26.44600 -24.07351 -23.03757 -22.88945 -22.38508 -21.66994 -20.85643 -18.55602 -18.24329 -16.76555 -16.60592 -16.47071 -16.26284 -16.12147 -15.66688 -15.40435 -14.87138 -14.77253 -14.41718 -14.31228 -13.79106 -13.74010 -13.59068 -13.40739 -13.28274 -12.85101 -12.60006 -12.40638 -12.19041 -11.99472 -11.89568 -11.80374 -11.71653 -11.49096 -11.39249 -11.25406 -11.13848 -11.05233 -10.88340 -10.71658 -10.69480 -10.52665 -10.10791 -9.60218 -9.36977 -8.88082 -8.53940 -8.43251 -8.16143 -7.62305 -6.03734 -4.08363 0.97501 1.10172 2.79566 3.29294 3.36665 3.39654 3.44148 3.47576 3.69069 4.22765 4.44466 4.45654 4.52792 4.59956 4.76056 4.77665 4.88266 4.97986 5.02639 5.07773 5.13031 5.17532 5.25841 5.30701 5.32187 5.38072 5.40626 5.50118 5.63031 5.64233 5.69726 5.74940 5.81405 5.85251 5.93715 6.01902 6.03256 6.05073 6.17283 6.22952 6.41716 6.43227 6.47917 6.93509 7.08752 7.13026 7.18422 7.47985 7.58522 7.93319 8.24947 8.46467 8.92166 9.15947 9.56884 11.04233 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.001742 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.068763 B =16066.981343 C =16735.648637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.037 3.963 16 N -0.522 5.522 17 C 0.016 3.984 18 C 0.060 3.940 19 C -0.116 4.116 20 C 0.063 3.937 21 O -0.313 6.313 22 C 0.134 3.866 23 C -0.155 4.155 24 C -0.081 4.081 25 C -0.163 4.163 26 C -0.081 4.081 27 C -0.211 4.211 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.017 0.983 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.034 0.966 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.131 0.869 48 H 0.128 0.872 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 -7.583 27.179 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.094 4.094 16 N -0.246 5.246 17 C -0.132 4.132 18 C -0.068 4.068 19 C -0.154 4.154 20 C -0.013 4.013 21 O -0.226 6.226 22 C 0.088 3.912 23 C -0.173 4.173 24 C -0.099 4.099 25 C -0.182 4.182 26 C -0.099 4.099 27 C -0.230 4.230 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.036 0.964 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.149 0.851 48 H 0.146 0.854 49 H 0.140 0.860 50 H 0.141 0.859 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.319 -6.236 26.814 28.485 hybrid contribution 1.270 -1.310 -0.326 1.853 sum -6.050 -7.546 26.487 28.198 Atomic orbital electron populations 1.22227 0.96822 1.01318 1.02396 1.21397 0.93499 0.84372 1.02501 1.48261 1.64149 1.13149 1.07702 1.19249 0.96143 0.93692 0.78102 1.21475 0.96983 1.31770 1.06187 0.92527 1.24936 0.97788 0.94970 0.96432 1.69943 1.35544 1.33482 1.14319 0.86461 0.84729 0.78037 0.78278 1.19885 1.21001 1.20874 1.20093 0.78905 0.87088 0.84692 1.90640 1.44800 1.17723 1.86751 1.22089 1.02185 0.94212 0.90924 1.61560 1.18030 1.43736 1.01240 1.22636 0.86041 0.99457 1.05032 1.21961 1.00712 0.94999 0.89121 1.21512 1.03492 0.99881 0.90538 1.22795 1.01112 0.90691 0.86715 1.86082 1.80742 1.40733 1.15072 1.19072 0.94247 0.93075 0.84817 1.20502 1.05616 0.99906 0.91315 1.20985 0.96750 0.96326 0.95885 1.21070 1.03598 0.94172 0.99312 1.20966 0.97358 0.99406 0.92169 1.21307 1.06688 0.96135 0.98828 0.92259 0.93067 0.91978 0.89991 0.92025 0.95099 0.93860 0.92798 0.92578 0.88636 0.96406 0.88584 0.91459 0.94759 0.90589 0.89595 0.90476 0.92084 0.91836 0.85148 0.85405 0.85992 0.85851 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.48 2.46 -175.07 -0.43 -12.91 16 4 C 0.25 6.44 5.16 -5.20 -0.03 6.41 16 5 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.51 10.42 7.37 -10.99 -0.08 10.34 16 14 O -0.52 -13.07 13.91 5.56 0.08 -12.99 16 15 C 0.04 0.55 4.00 -4.97 -0.02 0.53 16 16 N -0.52 -7.59 4.50 -244.37 -1.10 -8.69 16 17 C 0.02 0.24 8.96 60.07 0.54 0.78 16 18 C 0.06 0.63 4.96 -3.83 -0.02 0.61 16 19 C -0.12 -1.16 5.51 -26.73 -0.15 -1.31 16 20 C 0.06 0.54 4.74 37.16 0.18 0.72 16 21 O -0.31 -3.38 10.14 -19.42 -0.20 -3.58 16 22 C 0.13 1.33 6.69 -39.22 -0.26 1.07 16 23 C -0.15 -1.39 9.99 -39.43 -0.39 -1.78 16 24 C -0.08 -0.60 10.04 -39.61 -0.40 -1.00 16 25 C -0.16 -1.15 10.04 -39.56 -0.40 -1.55 16 26 C -0.08 -0.60 10.04 -39.61 -0.40 -0.99 16 27 C -0.21 -1.79 9.04 -39.44 -0.36 -2.15 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.63 7.22 -51.93 -0.37 0.26 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.28 7.42 -51.92 -0.39 0.90 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 36 H 0.06 0.75 7.38 -51.93 -0.38 0.37 16 37 H 0.10 1.20 6.97 -51.93 -0.36 0.84 16 38 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.10 1.82 5.82 -51.93 -0.30 1.51 16 40 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 41 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 42 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.82 6.55 -51.93 -0.34 0.48 16 45 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 46 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 47 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 49 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 50 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 51 H 0.13 0.89 6.30 -52.48 -0.33 0.56 16 LS Contribution 411.72 15.07 6.20 6.20 Total: -1.00 -33.90 411.72 -10.12 -44.02 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.54 Total: -1.00 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.85 Total: -2.04 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.79 Total: -47.46 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.12 Total: -16.57 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.90 -10.12 -44.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298742297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.554 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds