Wall clock time and date at job start Tue Mar 31 2020 18:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46632 * 2 1 4 4 C 1.46496 * 120.00037 * 269.99382 * 3 2 1 5 5 C 1.50698 * 109.47356 * 270.00269 * 4 3 2 6 6 H 1.08001 * 119.99962 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00088 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99641 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99804 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47186 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46755 * 120.00477 * 9 7 5 12 12 H 1.48504 * 109.46918 * 239.99979 * 9 7 5 13 13 C 1.34780 * 120.00036 * 90.00233 * 3 2 1 14 14 O 1.21280 * 120.00144 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99927 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.47360 * 180.02562 * 15 13 3 17 17 C 1.46908 * 110.99591 * 293.95134 * 16 15 13 18 18 C 1.46900 * 111.00268 * 169.99988 * 16 15 13 19 19 C 1.52995 * 109.46922 * 189.99721 * 18 16 15 20 20 C 1.53001 * 109.47181 * 179.97438 * 19 18 16 21 21 O 1.42902 * 109.47386 * 180.02562 * 20 19 18 22 22 C 1.35898 * 116.99694 * 180.02562 * 21 20 19 23 23 C 1.38735 * 120.05254 * 179.97438 * 22 21 20 24 24 C 1.38144 * 119.94607 * 179.97438 * 23 22 21 25 25 C 1.38266 * 120.05233 * 0.02562 * 24 23 22 26 26 C 1.38269 * 120.11595 * 359.95530 * 25 24 23 27 27 C 1.38142 * 120.04935 * 0.04230 * 26 25 24 28 28 H 1.09006 * 109.47372 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47563 * 299.99707 * 1 2 3 30 30 H 1.09000 * 109.47129 * 59.99971 * 1 2 3 31 31 H 1.08994 * 109.46952 * 239.99993 * 2 1 3 32 32 H 1.08997 * 109.46696 * 119.99407 * 2 1 3 33 33 H 1.09000 * 109.46989 * 30.00622 * 4 3 2 34 34 H 1.09009 * 109.47100 * 150.00843 * 4 3 2 35 35 H 0.97005 * 119.99667 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47377 * 60.00149 * 15 13 3 37 37 H 1.09000 * 109.47383 * 299.99877 * 15 13 3 38 38 H 1.09000 * 109.47130 * 296.04910 * 17 16 15 39 39 H 1.08997 * 109.46980 * 56.04450 * 17 16 15 40 40 H 1.09001 * 109.47146 * 176.04472 * 17 16 15 41 41 H 1.08999 * 109.47137 * 69.99531 * 18 16 15 42 42 H 1.08993 * 109.46842 * 309.99555 * 18 16 15 43 43 H 1.08999 * 109.47370 * 59.99952 * 19 18 16 44 44 H 1.09006 * 109.47017 * 299.99794 * 19 18 16 45 45 H 1.08999 * 109.46920 * 59.99785 * 20 19 18 46 46 H 1.08998 * 109.47220 * 300.00155 * 20 19 18 47 47 H 1.08002 * 120.02704 * 359.70561 * 23 22 21 48 48 H 1.08001 * 119.97447 * 179.97438 * 24 23 22 49 49 H 1.08000 * 119.94089 * 179.97438 * 25 24 23 50 50 H 1.07992 * 119.97577 * 180.02562 * 26 25 24 51 51 H 1.08005 * 120.02748 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7036 6 1 4.3426 1.2303 -1.0960 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6180 9 14 5.9132 2.0957 -3.4173 10 1 6.6004 1.2398 -2.4173 11 1 5.9202 1.4165 -4.7380 12 1 6.6209 3.3967 -3.5261 13 6 2.2428 2.0166 1.1672 14 8 2.6474 3.1599 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2065 3.5889 17 6 3.7457 2.5103 3.6277 18 6 1.8558 1.6407 4.8666 19 6 1.9743 2.7001 5.9641 20 6 1.5018 2.1111 7.2947 21 8 1.6119 3.1007 8.3197 22 6 1.2303 2.7368 9.5722 23 6 1.3113 3.6478 10.6154 24 6 0.9223 3.2756 11.8877 25 6 0.4530 1.9963 12.1218 26 6 0.3709 1.0866 11.0837 27 6 0.7586 1.4540 9.8098 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.6752 3.5162 -4.4439 36 1 2.6211 0.4187 2.5302 37 1 0.9432 1.0125 2.5299 38 1 4.3054 1.5956 3.8229 39 1 4.0548 2.9278 2.6695 40 1 3.9430 3.2330 4.4195 41 1 2.4748 0.7810 5.1232 42 1 0.8162 1.3260 4.7762 43 1 1.3553 3.5599 5.7076 44 1 3.0140 3.0149 6.0544 45 1 2.1204 1.2512 7.5515 46 1 0.4621 1.7966 7.2041 47 1 1.6823 4.6457 10.4339 48 1 0.9856 3.9843 12.7002 49 1 0.1497 1.7072 13.1172 50 1 0.0036 0.0881 11.2691 51 1 0.6947 0.7430 8.9992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298742297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:08 Heat of formation + Delta-G solvation = -62.760990 kcal Electronic energy + Delta-G solvation = -27949.796043 eV Core-core repulsion = 24041.879794 eV Total energy + Delta-G solvation = -3907.916249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.06594 -40.84204 -38.69793 -38.01961 -36.80546 -34.91843 -33.65017 -31.88758 -31.60126 -30.67839 -29.99922 -28.34617 -27.59739 -25.34744 -24.46155 -23.85361 -23.33136 -22.52812 -21.72276 -19.80966 -19.17907 -18.61602 -17.97733 -17.35670 -17.31154 -17.05439 -16.74335 -16.55871 -16.30553 -15.84592 -15.64333 -15.30937 -14.96987 -14.70350 -14.61357 -14.35926 -14.30441 -14.14292 -13.93802 -13.53927 -13.39269 -13.27259 -13.11175 -12.96090 -12.72240 -12.67487 -12.56081 -12.46336 -12.43213 -12.39973 -12.14188 -12.09449 -11.81524 -11.67086 -11.65912 -11.46464 -10.65220 -10.48352 -9.93418 -9.38924 -9.25504 -9.15161 -8.22168 -6.37130 0.41182 0.51218 1.34947 1.37548 1.49052 1.90383 2.06519 2.31988 2.44450 2.86933 3.06406 3.07824 3.73303 3.87660 3.88592 3.98784 4.05135 4.10560 4.15953 4.25438 4.29690 4.36056 4.39186 4.40491 4.47282 4.51652 4.53134 4.57728 4.60797 4.69566 4.71251 4.78383 4.95504 5.00842 5.04937 5.07543 5.10845 5.12898 5.23257 5.26926 5.39681 5.41768 5.50335 5.59651 5.62460 5.86303 5.89523 5.94466 6.07905 6.13154 6.49245 6.71862 6.86963 7.29610 7.57797 8.84761 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.001742 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.068763 B =16066.981343 C =16735.648637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.494 3.506 14 O -0.580 6.580 15 C 0.053 3.947 16 N -0.546 5.546 17 C 0.023 3.977 18 C 0.065 3.935 19 C -0.111 4.111 20 C 0.066 3.934 21 O -0.337 6.337 22 C 0.108 3.892 23 C -0.176 4.176 24 C -0.085 4.085 25 C -0.166 4.166 26 C -0.087 4.087 27 C -0.219 4.219 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.020 0.980 34 H -0.007 1.007 35 H 0.266 0.734 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.035 0.965 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.128 0.872 48 H 0.149 0.851 49 H 0.146 0.854 50 H 0.147 0.853 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 -10.766 29.618 32.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.078 4.078 16 N -0.271 5.271 17 C -0.125 4.125 18 C -0.062 4.062 19 C -0.149 4.149 20 C -0.010 4.010 21 O -0.251 6.251 22 C 0.063 3.937 23 C -0.195 4.195 24 C -0.103 4.103 25 C -0.184 4.184 26 C -0.104 4.104 27 C -0.237 4.237 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.038 0.962 34 H 0.012 0.988 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.146 0.854 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.146 0.854 48 H 0.167 0.833 49 H 0.164 0.836 50 H 0.165 0.835 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.699 -9.473 29.279 31.722 hybrid contribution 1.325 -0.291 -1.014 1.694 sum -6.374 -9.764 28.265 30.575 Atomic orbital electron populations 1.22158 0.94566 1.03480 1.01690 1.21741 0.95327 0.81352 1.03835 1.48295 1.64306 1.15096 1.06140 1.18649 0.95152 0.91421 0.80546 1.21748 0.97926 1.31816 1.06419 0.92885 1.25871 1.02368 0.94532 0.96496 1.70066 1.37679 1.34290 1.14810 0.85368 0.79049 0.77956 0.78414 1.19070 1.19395 1.20888 1.21242 0.77402 0.86724 0.86373 1.90616 1.47163 1.20512 1.87735 1.22005 1.04539 0.93812 0.87433 1.61465 1.17566 1.45030 1.03018 1.22450 0.87044 1.00293 1.02690 1.22016 1.02159 0.95274 0.86758 1.21415 1.02472 0.99425 0.91582 1.22801 1.02187 0.90498 0.85465 1.86035 1.81316 1.41912 1.15852 1.19337 0.95584 0.94147 0.84610 1.20725 1.06519 1.00068 0.92153 1.21295 0.96085 0.97176 0.95771 1.21443 1.02687 0.93857 1.00460 1.21330 0.96753 1.00595 0.91770 1.21533 1.06530 0.95760 0.99906 0.88555 0.91955 0.94546 0.91172 0.88138 0.96209 0.98837 0.92478 0.90027 0.85390 0.94637 0.93195 0.90595 0.92594 0.88459 0.91536 0.91571 0.90573 0.90435 0.85384 0.83318 0.83643 0.83516 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 10.24 71.98 0.74 -3.07 16 2 C 0.10 2.94 5.93 86.38 0.51 3.45 16 3 N -0.61 -25.61 2.46 -826.17 -2.03 -27.64 16 4 C 0.26 14.47 5.16 85.63 0.44 14.91 16 5 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 9 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 C 0.49 20.57 7.37 87.66 0.65 21.21 16 14 O -0.58 -30.60 13.91 -3.03 -0.04 -30.64 16 15 C 0.05 1.43 4.00 85.55 0.34 1.78 16 16 N -0.55 -15.09 4.50 -927.04 -4.17 -19.26 16 17 C 0.02 0.69 8.96 127.69 1.14 1.84 16 18 C 0.07 1.15 4.96 86.30 0.43 1.58 16 19 C -0.11 -2.09 5.51 30.59 0.17 -1.92 16 20 C 0.07 1.02 4.74 71.98 0.34 1.36 16 21 O -0.34 -7.17 10.14 -92.40 -0.94 -8.11 16 22 C 0.11 2.09 6.69 22.51 0.15 2.24 16 23 C -0.18 -3.13 9.99 22.37 0.22 -2.90 16 24 C -0.09 -1.14 10.04 22.25 0.22 -0.91 16 25 C -0.17 -1.95 10.04 22.28 0.22 -1.73 16 26 C -0.09 -1.06 10.04 22.25 0.22 -0.84 16 27 C -0.22 -3.32 9.04 22.36 0.20 -3.11 16 28 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 32 H 0.10 2.19 6.44 -2.39 -0.02 2.17 16 33 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 34 H -0.01 -0.42 7.42 -2.38 -0.02 -0.43 16 35 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 36 H 0.08 1.85 7.38 -2.39 -0.02 1.83 16 37 H 0.13 2.67 6.97 -2.39 -0.02 2.66 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 1.97 5.82 -2.39 -0.01 1.96 16 40 H 0.08 2.06 6.47 -2.39 -0.02 2.04 16 41 H 0.06 0.80 8.12 -2.39 -0.02 0.78 16 42 H 0.10 1.35 7.93 -2.39 -0.02 1.33 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.07 1.37 6.55 -2.38 -0.02 1.35 16 45 H 0.08 0.94 7.66 -2.39 -0.02 0.92 16 46 H 0.08 0.97 7.66 -2.39 -0.02 0.95 16 47 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 48 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 49 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 50 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 51 H 0.14 1.61 6.30 -2.91 -0.02 1.59 16 Total: -1.00 -79.79 411.72 2.74 -77.06 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.89 Total: 14.44 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 6.71 Total: 3.41 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -5.92 Total: -103.62 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.98 Total: -38.76 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -79.79 2.74 -77.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298742297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.298 kcal (2) G-P(sol) polarization free energy of solvation -79.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds