Wall clock time and date at job start Tue Mar 31 2020 18:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47020 * 2 1 4 4 C 1.46497 * 120.00200 * 270.00242 * 3 2 1 5 5 C 1.50696 * 109.47166 * 269.99982 * 4 3 2 6 6 H 1.08003 * 119.99841 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00270 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99753 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00285 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47377 * 59.99608 * 9 7 5 11 11 H 1.48499 * 109.47397 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47253 * 299.99544 * 9 7 5 13 13 C 1.34779 * 119.99424 * 89.99992 * 3 2 1 14 14 O 1.21285 * 119.99432 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00195 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46943 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99623 * 66.04783 * 16 15 13 18 18 C 1.52998 * 109.46994 * 52.24491 * 17 16 15 19 19 O 1.42901 * 109.47086 * 65.38819 * 18 17 16 20 20 C 1.42903 * 114.00031 * 179.97438 * 19 18 17 21 21 C 1.46896 * 110.99868 * 190.00048 * 16 15 13 22 22 C 1.50696 * 109.47237 * 161.34583 * 21 16 15 23 23 C 1.38236 * 120.00406 * 92.89147 * 22 21 16 24 24 C 1.38240 * 120.00146 * 180.02562 * 23 22 21 25 25 C 1.38228 * 119.99938 * 359.95658 * 24 23 22 26 26 C 1.38245 * 120.00211 * 0.27937 * 25 24 23 27 27 C 1.38233 * 119.99475 * 359.50790 * 26 25 24 28 28 H 1.08996 * 109.47592 * 60.00053 * 1 2 3 29 29 H 1.09008 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47252 * 299.99141 * 1 2 3 31 31 H 1.09003 * 109.47097 * 240.00335 * 2 1 3 32 32 H 1.08998 * 109.47307 * 120.00666 * 2 1 3 33 33 H 1.08999 * 109.47211 * 30.00270 * 4 3 2 34 34 H 1.08999 * 109.46885 * 149.99903 * 4 3 2 35 35 H 0.96997 * 120.00044 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47113 * 59.99960 * 15 13 3 37 37 H 1.08999 * 109.47042 * 299.99850 * 15 13 3 38 38 H 1.08998 * 109.46773 * 172.24115 * 17 16 15 39 39 H 1.08996 * 109.47133 * 292.24041 * 17 16 15 40 40 H 1.09004 * 109.47050 * 185.38214 * 18 17 16 41 41 H 1.09002 * 109.47157 * 305.38325 * 18 17 16 42 42 H 1.09000 * 109.46940 * 300.00236 * 20 19 18 43 43 H 1.09004 * 109.47363 * 59.99382 * 20 19 18 44 44 H 1.08993 * 109.47716 * 179.97438 * 20 19 18 45 45 H 1.08995 * 109.47133 * 41.33930 * 21 16 15 46 46 H 1.09008 * 109.47081 * 281.33950 * 21 16 15 47 47 H 1.07996 * 119.99888 * 359.97438 * 23 22 21 48 48 H 1.07999 * 119.99828 * 179.97438 * 24 23 22 49 49 H 1.07996 * 120.00162 * 180.02562 * 25 24 23 50 50 H 1.07992 * 120.00009 * 179.72831 * 26 25 24 51 51 H 1.07999 * 119.99595 * 180.25835 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3427 1.2310 -1.0958 7 6 4.1492 2.3907 -2.8774 8 7 3.3492 3.1268 -3.6175 9 14 5.9131 2.0966 -3.4171 10 1 6.1400 0.6399 -3.5955 11 1 6.1607 2.7968 -4.7030 12 1 6.8411 2.6189 -2.3820 13 6 2.2428 2.0165 1.1673 14 8 2.6475 3.1598 1.1673 15 6 1.9922 1.3058 2.4723 16 7 2.3108 2.2056 3.5890 17 6 1.3842 3.3449 3.6278 18 6 -0.0568 2.8311 3.6086 19 8 -0.3179 2.1004 4.8086 20 6 -1.6441 1.5746 4.8920 21 6 2.3078 1.4807 4.8666 22 6 3.0625 2.2784 5.8986 23 6 2.3854 3.1555 6.7251 24 6 3.0779 3.8876 7.6714 25 6 4.4472 3.7419 7.7919 26 6 5.1250 2.8683 6.9621 27 6 4.4319 2.1330 6.0187 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5815 1.6879 -2.0283 34 1 2.0953 3.1411 -1.1382 35 1 3.6752 3.5173 -4.4434 36 1 2.6228 0.4186 2.5298 37 1 0.9444 1.0112 2.5302 38 1 1.5530 3.9195 4.5385 39 1 1.5546 3.9816 2.7597 40 1 -0.7428 3.6755 3.5410 41 1 -0.1983 2.1781 2.7474 42 1 -2.3627 2.3932 4.8511 43 1 -1.8190 0.8957 4.0574 44 1 -1.7622 1.0337 5.8309 45 1 2.7872 0.5107 4.7351 46 1 1.2800 1.3359 5.1997 47 1 1.3156 3.2695 6.6309 48 1 2.5489 4.5733 8.3168 49 1 4.9881 4.3135 8.5314 50 1 6.1953 2.7577 7.0532 51 1 4.9609 1.4474 5.3733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298744430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:15 Heat of formation + Delta-G solvation = -35.445801 kcal Electronic energy + Delta-G solvation = -30126.368262 eV Core-core repulsion = 26219.636488 eV Total energy + Delta-G solvation = -3906.731774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.98697 -38.94728 -38.13586 -36.20883 -35.11377 -32.79365 -31.84194 -30.83688 -30.09813 -29.80549 -28.06219 -26.67578 -26.29631 -24.45126 -23.07435 -22.79787 -22.37590 -21.58238 -20.35695 -18.22113 -16.93508 -16.84204 -16.67321 -16.39227 -16.21830 -15.84056 -15.17745 -15.01384 -14.87478 -14.63381 -14.49809 -14.10469 -13.92701 -13.40466 -13.32945 -13.18261 -12.81561 -12.59391 -12.42409 -12.35917 -12.19447 -12.00049 -11.96928 -11.69319 -11.45309 -11.40949 -11.16490 -11.07791 -10.94455 -10.84084 -10.77125 -10.66470 -10.48818 -10.09364 -9.73693 -9.60427 -8.83683 -8.78963 -8.68686 -8.40204 -7.93634 -7.60383 -6.01432 -4.05722 1.42081 1.49631 3.34290 3.38678 3.40355 3.46633 3.56509 3.70085 3.99198 4.39451 4.49740 4.87100 4.93868 4.98800 5.04626 5.06519 5.10486 5.16625 5.18027 5.21051 5.27470 5.33323 5.34472 5.44255 5.45905 5.52575 5.58641 5.61640 5.65039 5.71406 5.76425 5.88695 5.98222 6.01594 6.13170 6.21069 6.21767 6.31991 6.44229 6.53626 6.57668 6.76222 6.91935 7.02652 7.09721 7.22724 7.25891 7.47453 7.59937 7.95666 8.27216 8.47667 8.94519 9.17984 9.59505 11.06594 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.003422 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.973064 B = 8180.007526 C = 9861.117741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.523 6.523 15 C 0.031 3.969 16 N -0.506 5.506 17 C 0.050 3.950 18 C 0.017 3.983 19 O -0.382 6.382 20 C 0.025 3.975 21 C 0.072 3.928 22 C -0.064 4.064 23 C -0.109 4.109 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.124 4.124 27 C -0.099 4.099 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.123 0.877 48 H 0.116 0.884 49 H 0.116 0.884 50 H 0.118 0.882 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 -5.509 20.511 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.130 3.870 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.099 4.099 16 N -0.228 5.228 17 C -0.078 4.078 18 C -0.061 4.061 19 O -0.302 6.302 20 C -0.071 4.071 21 C -0.054 4.054 22 C -0.065 4.065 23 C -0.128 4.128 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.142 4.142 27 C -0.118 4.118 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.132 0.868 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.141 0.859 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.136 0.864 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.379 -4.632 20.358 22.143 hybrid contribution -0.071 -0.509 -0.573 0.770 sum -7.449 -5.140 19.785 21.757 Atomic orbital electron populations 1.22220 0.97043 1.01314 1.02036 1.21388 0.93282 0.84487 1.02622 1.48265 1.64168 1.13157 1.07722 1.19218 0.96158 0.93539 0.78091 1.21411 0.96962 1.31814 1.06167 0.92529 1.24924 0.97789 0.94937 0.96420 1.69921 1.35716 1.33522 1.14389 0.86572 0.84934 0.78203 0.77797 1.20299 1.21231 1.20140 1.20156 0.78788 0.87153 0.84693 1.90629 1.44606 1.17942 1.86758 1.22193 1.00661 0.96255 0.90832 1.61766 1.50827 1.08845 1.01372 1.22600 0.85744 0.94400 1.05056 1.23549 0.99706 0.95587 0.87211 1.87911 1.29661 1.71719 1.40908 1.22761 0.84654 0.97910 1.01819 1.21548 1.00870 0.95112 0.87890 1.19767 0.93758 0.97150 0.95806 1.21139 1.00074 0.96081 0.95499 1.21088 0.94490 0.99932 0.98989 1.21083 0.94600 0.99067 0.99734 1.21120 0.99662 0.97131 0.96330 1.21078 0.93834 0.99450 0.97419 0.92002 0.92210 0.93518 0.89936 0.91909 0.95213 0.94003 0.92730 0.88714 0.92160 0.89968 0.86757 0.92889 0.92733 0.94215 0.94240 0.89890 0.91010 0.89443 0.85879 0.86568 0.86636 0.86432 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.15 0.38 -1.79 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.43 2.46 -175.07 -0.43 -12.86 16 4 C 0.25 6.46 5.16 -5.20 -0.03 6.43 16 5 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.51 10.35 7.44 -10.98 -0.08 10.27 16 14 O -0.52 -12.96 13.90 5.55 0.08 -12.88 16 15 C 0.03 0.48 3.58 -4.97 -0.02 0.46 16 16 N -0.51 -7.68 4.37 -237.52 -1.04 -8.72 16 17 C 0.05 0.73 5.42 -3.82 -0.02 0.71 16 18 C 0.02 0.21 5.63 37.16 0.21 0.42 16 19 O -0.38 -4.19 7.41 -35.23 -0.26 -4.45 16 20 C 0.02 0.21 11.01 101.05 1.11 1.32 16 21 C 0.07 0.91 5.00 -4.98 -0.02 0.89 16 22 C -0.06 -0.83 5.07 -104.62 -0.53 -1.36 16 23 C -0.11 -1.31 8.27 -39.58 -0.33 -1.63 16 24 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 25 C -0.13 -1.38 10.05 -39.58 -0.40 -1.77 16 26 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 27 C -0.10 -1.27 9.71 -39.58 -0.38 -1.65 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.05 0.57 7.22 -51.93 -0.38 0.19 16 31 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 33 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.09 1.32 7.10 -51.93 -0.37 0.95 16 37 H 0.06 0.81 4.77 -51.93 -0.25 0.56 16 38 H 0.08 1.16 5.95 -51.93 -0.31 0.85 16 39 H 0.11 2.03 6.05 -51.93 -0.31 1.72 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.70 5.87 -51.93 -0.30 0.39 16 42 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.84 7.72 -51.93 -0.40 0.44 16 46 H 0.09 1.06 4.51 -51.93 -0.23 0.83 16 47 H 0.12 1.39 7.77 -52.49 -0.41 0.98 16 48 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 49 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 50 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 51 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 403.90 15.07 6.09 6.09 Total: -1.00 -33.22 403.90 -9.49 -42.72 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.29 Total: 2.32 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.35 Total: -3.28 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.73 Total: -47.57 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.18 Total: -17.33 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.22 -9.49 -42.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298744430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.270 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds