Wall clock time and date at job start Tue Mar 31 2020 18:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47020 * 2 1 4 4 C 1.46497 * 120.00200 * 270.00242 * 3 2 1 5 5 C 1.50696 * 109.47166 * 269.99982 * 4 3 2 6 6 H 1.08003 * 119.99841 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00270 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99753 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00285 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47377 * 59.99608 * 9 7 5 11 11 H 1.48499 * 109.47397 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47253 * 299.99544 * 9 7 5 13 13 C 1.34779 * 119.99424 * 89.99992 * 3 2 1 14 14 O 1.21285 * 119.99432 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00195 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46943 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99623 * 66.04783 * 16 15 13 18 18 C 1.52998 * 109.46994 * 52.24491 * 17 16 15 19 19 O 1.42901 * 109.47086 * 65.38819 * 18 17 16 20 20 C 1.42903 * 114.00031 * 179.97438 * 19 18 17 21 21 C 1.46896 * 110.99868 * 190.00048 * 16 15 13 22 22 C 1.50696 * 109.47237 * 161.34583 * 21 16 15 23 23 C 1.38236 * 120.00406 * 92.89147 * 22 21 16 24 24 C 1.38240 * 120.00146 * 180.02562 * 23 22 21 25 25 C 1.38228 * 119.99938 * 359.95658 * 24 23 22 26 26 C 1.38245 * 120.00211 * 0.27937 * 25 24 23 27 27 C 1.38233 * 119.99475 * 359.50790 * 26 25 24 28 28 H 1.08996 * 109.47592 * 60.00053 * 1 2 3 29 29 H 1.09008 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47252 * 299.99141 * 1 2 3 31 31 H 1.09003 * 109.47097 * 240.00335 * 2 1 3 32 32 H 1.08998 * 109.47307 * 120.00666 * 2 1 3 33 33 H 1.08999 * 109.47211 * 30.00270 * 4 3 2 34 34 H 1.08999 * 109.46885 * 149.99903 * 4 3 2 35 35 H 0.96997 * 120.00044 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47113 * 59.99960 * 15 13 3 37 37 H 1.08999 * 109.47042 * 299.99850 * 15 13 3 38 38 H 1.08998 * 109.46773 * 172.24115 * 17 16 15 39 39 H 1.08996 * 109.47133 * 292.24041 * 17 16 15 40 40 H 1.09004 * 109.47050 * 185.38214 * 18 17 16 41 41 H 1.09002 * 109.47157 * 305.38325 * 18 17 16 42 42 H 1.09000 * 109.46940 * 300.00236 * 20 19 18 43 43 H 1.09004 * 109.47363 * 59.99382 * 20 19 18 44 44 H 1.08993 * 109.47716 * 179.97438 * 20 19 18 45 45 H 1.08995 * 109.47133 * 41.33930 * 21 16 15 46 46 H 1.09008 * 109.47081 * 281.33950 * 21 16 15 47 47 H 1.07996 * 119.99888 * 359.97438 * 23 22 21 48 48 H 1.07999 * 119.99828 * 179.97438 * 24 23 22 49 49 H 1.07996 * 120.00162 * 180.02562 * 25 24 23 50 50 H 1.07992 * 120.00009 * 179.72831 * 26 25 24 51 51 H 1.07999 * 119.99595 * 180.25835 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3427 1.2310 -1.0958 7 6 4.1492 2.3907 -2.8774 8 7 3.3492 3.1268 -3.6175 9 14 5.9131 2.0966 -3.4171 10 1 6.1400 0.6399 -3.5955 11 1 6.1607 2.7968 -4.7030 12 1 6.8411 2.6189 -2.3820 13 6 2.2428 2.0165 1.1673 14 8 2.6475 3.1598 1.1673 15 6 1.9922 1.3058 2.4723 16 7 2.3108 2.2056 3.5890 17 6 1.3842 3.3449 3.6278 18 6 -0.0568 2.8311 3.6086 19 8 -0.3179 2.1004 4.8086 20 6 -1.6441 1.5746 4.8920 21 6 2.3078 1.4807 4.8666 22 6 3.0625 2.2784 5.8986 23 6 2.3854 3.1555 6.7251 24 6 3.0779 3.8876 7.6714 25 6 4.4472 3.7419 7.7919 26 6 5.1250 2.8683 6.9621 27 6 4.4319 2.1330 6.0187 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5815 1.6879 -2.0283 34 1 2.0953 3.1411 -1.1382 35 1 3.6752 3.5173 -4.4434 36 1 2.6228 0.4186 2.5298 37 1 0.9444 1.0112 2.5302 38 1 1.5530 3.9195 4.5385 39 1 1.5546 3.9816 2.7597 40 1 -0.7428 3.6755 3.5410 41 1 -0.1983 2.1781 2.7474 42 1 -2.3627 2.3932 4.8511 43 1 -1.8190 0.8957 4.0574 44 1 -1.7622 1.0337 5.8309 45 1 2.7872 0.5107 4.7351 46 1 1.2800 1.3359 5.1997 47 1 1.3156 3.2695 6.6309 48 1 2.5489 4.5733 8.3168 49 1 4.9881 4.3135 8.5314 50 1 6.1953 2.7577 7.0532 51 1 4.9609 1.4474 5.3733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298744430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:14 Heat of formation + Delta-G solvation = -56.069677 kcal Electronic energy + Delta-G solvation = -30127.262580 eV Core-core repulsion = 26219.636488 eV Total energy + Delta-G solvation = -3907.626092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.23385 -40.11473 -39.15065 -37.33971 -36.67959 -34.89563 -32.81664 -31.73620 -31.60362 -30.92136 -29.51594 -27.95594 -27.35922 -25.51544 -24.81512 -24.07917 -23.35106 -22.70653 -21.40841 -19.75597 -18.60667 -18.02730 -17.89569 -17.59439 -17.41889 -17.17162 -16.52550 -16.13880 -15.97615 -15.84788 -15.67311 -15.48413 -15.11767 -14.69971 -14.48913 -14.29491 -14.18091 -13.85162 -13.56572 -13.45444 -13.33590 -13.24291 -13.14559 -13.10039 -12.84819 -12.68091 -12.63623 -12.52472 -12.36436 -12.13848 -12.05888 -11.89867 -11.74013 -11.70711 -11.63412 -10.63134 -10.61075 -10.40833 -9.70434 -9.59823 -9.39608 -9.01977 -8.21030 -6.35445 0.52628 0.60876 1.36200 1.40789 1.47779 1.89828 2.26539 2.42159 2.68594 2.94273 3.08319 3.31420 3.74446 3.89788 3.98614 4.03287 4.11056 4.13484 4.24735 4.30388 4.36629 4.39899 4.41759 4.48411 4.49382 4.57201 4.57388 4.63752 4.74344 4.76659 4.85960 4.88582 4.94107 4.98840 5.06348 5.10067 5.11261 5.23981 5.26821 5.32412 5.37300 5.60239 5.65890 5.70795 5.82781 5.88302 6.01977 6.09446 6.16131 6.18092 6.25059 6.72937 6.86875 7.31033 7.58285 8.85535 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.003422 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.973064 B = 8180.007526 C = 9861.117741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.267 3.733 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.498 3.502 14 O -0.577 6.577 15 C 0.048 3.952 16 N -0.527 5.527 17 C 0.055 3.945 18 C 0.030 3.970 19 O -0.388 6.388 20 C 0.019 3.981 21 C 0.080 3.920 22 C -0.080 4.080 23 C -0.117 4.117 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.134 4.134 27 C -0.119 4.119 28 H 0.039 0.961 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.020 0.980 34 H -0.005 1.005 35 H 0.266 0.734 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.128 0.872 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.133 0.867 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.424 -7.425 22.491 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.145 3.855 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.789 3.211 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.287 3.713 14 O -0.457 6.457 15 C -0.082 4.082 16 N -0.250 5.250 17 C -0.073 4.073 18 C -0.048 4.048 19 O -0.308 6.308 20 C -0.076 4.076 21 C -0.046 4.046 22 C -0.081 4.081 23 C -0.135 4.135 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.152 4.152 27 C -0.138 4.138 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.038 0.962 34 H 0.013 0.987 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.146 0.854 48 H 0.156 0.844 49 H 0.157 0.843 50 H 0.151 0.849 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.623 -6.603 22.359 24.528 hybrid contribution -0.044 0.121 -1.123 1.131 sum -7.666 -6.482 21.236 23.489 Atomic orbital electron populations 1.22140 0.94639 1.03454 1.01450 1.21726 0.95246 0.81553 1.03803 1.48280 1.64302 1.15032 1.06160 1.18625 0.95031 0.91411 0.80418 1.21702 0.98017 1.31889 1.06419 0.93025 1.25830 1.02244 0.94516 0.96478 1.70041 1.37747 1.34262 1.14816 0.85511 0.79221 0.79048 0.77299 1.18398 1.20322 1.20539 1.21136 0.77379 0.86706 0.86128 1.90609 1.46924 1.20479 1.87664 1.22066 1.02567 0.95812 0.87762 1.61689 1.51577 1.09316 1.02435 1.22344 0.87545 0.94161 1.03259 1.23252 0.98051 0.95884 0.87628 1.87868 1.31412 1.71611 1.39898 1.22960 0.83270 0.98325 1.03076 1.21534 1.01515 0.95109 0.86449 1.19887 0.93972 0.97904 0.96325 1.21270 1.00432 0.96112 0.95719 1.21416 0.94821 0.99858 0.98877 1.21420 0.94829 0.98773 0.99853 1.21394 1.00632 0.97050 0.96148 1.21234 0.94159 1.00209 0.98176 0.94215 0.88600 0.92518 0.91008 0.88444 0.96179 0.98683 0.92469 0.86704 0.89526 0.89791 0.90643 0.92232 0.93241 0.93625 0.93601 0.88072 0.90041 0.88568 0.85412 0.84375 0.84295 0.84908 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.24 71.98 0.74 -3.04 16 2 C 0.10 2.97 5.93 86.38 0.51 3.48 16 3 N -0.61 -25.57 2.46 -826.17 -2.03 -27.60 16 4 C 0.27 14.52 5.16 85.63 0.44 14.96 16 5 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 9 Si 0.96 45.75 29.54 68.60 2.03 47.77 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 13 C 0.50 20.79 7.44 87.66 0.65 21.44 16 14 O -0.58 -30.18 13.90 -3.05 -0.04 -30.22 16 15 C 0.05 1.41 3.58 85.56 0.31 1.71 16 16 N -0.53 -15.75 4.37 -905.37 -3.96 -19.71 16 17 C 0.06 1.64 5.42 86.30 0.47 2.11 16 18 C 0.03 0.70 5.63 71.98 0.40 1.10 16 19 O -0.39 -7.63 7.41 -148.98 -1.10 -8.73 16 20 C 0.02 0.27 11.01 113.37 1.25 1.51 16 21 C 0.08 1.89 5.00 85.56 0.43 2.32 16 22 C -0.08 -1.99 5.07 -19.87 -0.10 -2.09 16 23 C -0.12 -2.64 8.27 22.27 0.18 -2.46 16 24 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 25 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 26 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 27 C -0.12 -2.98 9.71 22.27 0.22 -2.76 16 28 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.06 1.24 7.22 -2.38 -0.02 1.22 16 31 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 32 H 0.10 2.25 6.44 -2.39 -0.02 2.24 16 33 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 34 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.12 2.90 7.10 -2.39 -0.02 2.89 16 37 H 0.09 2.09 4.77 -2.39 -0.01 2.08 16 38 H 0.08 2.40 5.95 -2.39 -0.01 2.39 16 39 H 0.08 2.86 6.05 -2.39 -0.01 2.84 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 1.20 5.87 -2.39 -0.01 1.19 16 42 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 44 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 1.74 7.72 -2.39 -0.02 1.72 16 46 H 0.10 2.12 4.51 -2.44 -0.01 2.11 16 47 H 0.13 2.69 7.77 -2.91 -0.02 2.67 16 48 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 49 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 50 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 51 H 0.12 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -76.02 403.90 2.95 -73.07 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.91 Total: 21.92 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 6.87 Total: 0.18 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -5.70 Total: -103.99 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -1.15 Total: -38.95 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -76.02 2.95 -73.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298744430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.996 kcal (2) G-P(sol) polarization free energy of solvation -76.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds