Wall clock time and date at job start Tue Mar 31 2020 19:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47116 * 2 1 4 4 C 1.36942 * 120.00105 * 272.19835 * 3 2 1 5 5 H 1.07998 * 120.00232 * 8.56126 * 4 3 2 6 6 C 1.38815 * 120.00127 * 188.57034 * 4 3 2 7 7 N 1.31620 * 119.99869 * 24.79161 * 6 4 3 8 8 Si 1.86799 * 119.99923 * 204.79839 * 6 4 3 9 9 H 1.48494 * 109.47148 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47001 * 119.99726 * 8 6 4 11 11 H 1.48503 * 109.47024 * 239.99776 * 8 6 4 12 12 C 1.46504 * 119.99959 * 92.19468 * 3 2 1 13 13 C 1.50704 * 109.46791 * 89.99965 * 12 3 2 14 14 O 1.21274 * 119.99861 * 0.02562 * 13 12 3 15 15 N 1.34774 * 119.99631 * 179.97438 * 13 12 3 16 16 C 1.46500 * 119.99772 * 180.02562 * 15 13 12 17 17 H 1.08996 * 109.47426 * 34.99782 * 16 15 13 18 18 C 1.50701 * 109.47406 * 155.00047 * 16 15 13 19 19 C 1.38273 * 119.93968 * 39.72323 * 18 16 15 20 20 C 1.38149 * 120.04964 * 179.72521 * 19 18 16 21 21 C 1.38725 * 119.94408 * 0.54956 * 20 19 18 22 22 O 1.35905 * 120.05619 * 179.74721 * 21 20 19 23 23 C 1.42897 * 116.99680 * 359.97438 * 22 21 20 24 24 C 1.38732 * 119.89103 * 359.72588 * 21 20 19 25 25 C 1.38148 * 119.94372 * 359.97438 * 24 21 20 26 26 C 1.53008 * 109.46835 * 274.99742 * 16 15 13 27 27 C 1.52999 * 109.46751 * 60.00230 * 26 16 15 28 28 C 1.53000 * 109.46951 * 179.97438 * 26 16 15 29 29 H 1.08995 * 109.47282 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46857 * 300.00267 * 1 2 3 31 31 H 1.09000 * 109.47127 * 59.99859 * 1 2 3 32 32 H 1.08999 * 109.46848 * 240.00462 * 2 1 3 33 33 H 1.09000 * 109.47127 * 120.00140 * 2 1 3 34 34 H 0.97000 * 120.00046 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.46971 * 329.99946 * 12 3 2 36 36 H 1.09000 * 109.47110 * 209.99784 * 12 3 2 37 37 H 0.96998 * 120.00051 * 0.02562 * 15 13 12 38 38 H 1.07999 * 119.97226 * 0.02562 * 19 18 16 39 39 H 1.08003 * 120.02587 * 180.26998 * 20 19 18 40 40 H 1.08997 * 109.47462 * 300.00092 * 23 22 21 41 41 H 1.09000 * 109.47422 * 60.00461 * 23 22 21 42 42 H 1.08998 * 109.47361 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.02861 * 179.97438 * 24 21 20 44 44 H 1.07999 * 119.96960 * 180.02562 * 25 24 21 45 45 H 1.08996 * 109.47146 * 300.00211 * 26 16 15 46 46 H 1.08996 * 109.47311 * 60.00082 * 27 26 16 47 47 H 1.09001 * 109.47092 * 179.97438 * 27 26 16 48 48 H 1.09002 * 109.47580 * 299.99763 * 27 26 16 49 49 H 1.08997 * 109.46974 * 60.00592 * 28 26 16 50 50 H 1.09002 * 109.47322 * 180.02562 * 28 26 16 51 51 H 1.08996 * 109.47527 * 300.00172 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2037 2.0419 -1.1851 5 1 1.8619 1.5997 -2.1092 6 6 2.8311 3.2802 -1.1986 7 7 3.6602 3.6084 -0.2306 8 14 2.4984 4.4805 -2.5907 9 1 1.5362 3.8758 -3.5464 10 1 1.9256 5.7339 -2.0373 11 1 3.7695 4.7859 -3.2953 12 6 2.3083 2.0556 1.2678 13 6 3.7464 1.8136 1.6481 14 8 4.4589 1.1441 0.9305 15 7 4.2408 2.3419 2.7851 16 6 5.6389 2.1071 3.1545 17 1 6.2521 2.0748 2.2540 18 6 6.1167 3.2227 4.0479 19 6 5.2771 3.7369 5.0188 20 6 5.7147 4.7557 5.8429 21 6 6.9936 5.2706 5.6880 22 8 7.4246 6.2764 6.4940 23 6 6.5077 6.7561 7.4795 24 6 7.8319 4.7568 4.7093 25 6 7.3918 3.7338 3.8919 26 6 5.7531 0.7744 3.8974 27 6 5.2681 -0.3582 2.9902 28 6 7.2133 0.5288 4.2826 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0983 4.4738 -0.2399 35 1 1.6553 1.6617 2.0465 36 1 2.1370 3.1264 1.1573 37 1 3.6710 2.8777 3.3588 38 1 4.2802 3.3384 5.1363 39 1 5.0602 5.1541 6.6040 40 1 5.6128 7.1377 6.9880 41 1 6.2347 5.9407 8.1493 42 1 6.9764 7.5555 8.0533 43 1 8.8278 5.1563 4.5865 44 1 8.0442 3.3332 3.1302 45 1 5.1398 0.8066 4.7978 46 1 5.8814 -0.3905 2.0898 47 1 5.3499 -1.3078 3.5193 48 1 4.2279 -0.1835 2.7153 49 1 7.5592 1.3356 4.9287 50 1 7.2948 -0.4209 4.8114 51 1 7.8262 0.4964 3.3819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299328829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:36 Heat of formation + Delta-G solvation = -23.490698 kcal Electronic energy + Delta-G solvation = -30294.083651 eV Core-core repulsion = 26387.870290 eV Total energy + Delta-G solvation = -3906.213362 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.31044 -39.00135 -37.51634 -35.86724 -34.78164 -32.51946 -31.80691 -31.00192 -30.30321 -29.14360 -27.67091 -26.89009 -26.39332 -24.82871 -23.47312 -22.71075 -21.37026 -20.63467 -19.57575 -19.15726 -18.21635 -16.93108 -16.27532 -15.86441 -15.83556 -15.36115 -15.03012 -14.98147 -14.48412 -14.29793 -13.78334 -13.69397 -13.56871 -13.34038 -13.10431 -12.87741 -12.58087 -12.44903 -12.20884 -12.11494 -12.04766 -11.76424 -11.66145 -11.41395 -11.25254 -11.16330 -11.02004 -10.79178 -10.71900 -10.70198 -10.47487 -10.32863 -10.28042 -10.02880 -9.82261 -9.74022 -8.94179 -8.68041 -8.19790 -8.01567 -7.86818 -6.83818 -5.75059 -2.99771 1.39334 1.46818 3.19023 3.42260 3.51222 3.53129 3.78219 4.25722 4.38356 4.61130 4.74636 4.88015 4.92019 4.95967 4.98429 5.25883 5.31226 5.36037 5.40851 5.44207 5.48478 5.52906 5.59706 5.70833 5.90246 5.96796 6.01158 6.04432 6.15455 6.25240 6.26874 6.30759 6.32468 6.35225 6.37969 6.41222 6.46513 6.59758 6.62787 6.70827 6.79133 6.87028 6.88921 6.97143 7.14091 7.24465 7.35034 7.59350 7.84184 8.31877 8.75226 9.22880 9.81214 9.97008 10.34173 11.34731 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.003591 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.172803 B = 7795.072907 C = 9014.104066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 N -0.575 5.575 4 C -0.241 4.241 5 H 0.076 0.924 6 C -0.002 4.002 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.294 1.294 12 C 0.163 3.837 13 C 0.533 3.467 14 O -0.525 6.525 15 N -0.744 5.744 16 C 0.199 3.801 17 H 0.089 0.911 18 C -0.105 4.105 19 C -0.074 4.074 20 C -0.205 4.205 21 C 0.116 3.884 22 O -0.321 6.321 23 C 0.029 3.971 24 C -0.149 4.149 25 C -0.068 4.068 26 C -0.097 4.097 27 C -0.133 4.133 28 C -0.144 4.144 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.251 0.749 35 H 0.032 0.968 36 H 0.100 0.900 37 H 0.382 0.618 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.035 0.965 48 H 0.059 0.941 49 H 0.054 0.946 50 H 0.050 0.950 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.739 0.816 16.703 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.021 3.979 3 N -0.294 5.294 4 C -0.370 4.370 5 H 0.094 0.906 6 C -0.199 4.199 7 N -0.541 5.541 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.218 1.218 11 H -0.222 1.222 12 C 0.032 3.968 13 C 0.320 3.680 14 O -0.398 6.398 15 N -0.399 5.399 16 C 0.093 3.907 17 H 0.107 0.893 18 C -0.105 4.105 19 C -0.092 4.092 20 C -0.223 4.223 21 C 0.071 3.929 22 O -0.235 6.235 23 C -0.067 4.067 24 C -0.168 4.168 25 C -0.087 4.087 26 C -0.117 4.117 27 C -0.190 4.190 28 C -0.202 4.202 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.118 0.882 37 H 0.215 0.785 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.488 0.530 16.088 16.711 hybrid contribution -0.433 1.209 -0.291 1.316 sum 4.055 1.738 15.797 16.402 Atomic orbital electron populations 1.22326 0.99683 0.99048 1.01424 1.20692 0.91733 0.86402 0.99121 1.43899 1.74066 1.09420 1.02052 1.19244 1.32195 0.99173 0.86391 0.90636 1.24646 0.97661 0.99504 0.98079 1.69913 1.27997 1.21465 1.34770 0.86280 0.77553 0.81604 0.81788 1.20551 1.21820 1.22194 1.20684 0.89447 1.00014 0.86628 1.21936 0.92069 0.76495 0.77535 1.90501 1.60241 1.39641 1.49409 1.46361 1.10276 1.57069 1.26168 1.19575 0.85669 0.89831 0.95642 0.89311 1.20011 0.94432 0.98534 0.97566 1.20721 0.99241 0.95235 0.94006 1.21147 0.95814 1.01580 1.03800 1.18995 0.93088 0.89002 0.91812 1.86046 1.42147 1.49532 1.45780 1.23010 0.93912 0.99350 0.90394 1.20370 1.00216 0.99461 0.96745 1.20856 0.95495 0.94638 0.97711 1.21494 0.96356 0.95497 0.98343 1.21829 1.02613 0.95594 0.99012 1.21829 0.96287 1.00913 1.01187 0.94371 0.93823 0.92900 0.93759 0.94723 0.93862 0.94977 0.88173 0.78476 0.85847 0.85740 0.92663 0.92795 0.88530 0.85449 0.85301 0.91969 0.91875 0.94584 0.92206 0.92740 0.93139 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.23 37.16 0.38 -2.55 16 2 C 0.15 3.11 6.39 -4.04 -0.03 3.08 16 3 N -0.57 -14.16 2.02 -174.61 -0.35 -14.51 16 4 C -0.24 -6.59 9.70 -15.06 -0.15 -6.73 16 5 H 0.08 2.06 7.94 -52.49 -0.42 1.65 16 6 C 0.00 -0.05 4.90 -17.43 -0.09 -0.14 16 7 N -0.90 -25.07 8.95 55.49 0.50 -24.58 16 8 Si 0.90 21.95 29.62 -169.99 -5.04 16.91 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 C 0.16 3.70 5.42 -5.19 -0.03 3.67 16 13 C 0.53 11.95 4.25 -10.98 -0.05 11.91 16 14 O -0.52 -13.75 13.28 5.56 0.07 -13.67 16 15 N -0.74 -13.48 4.91 -54.93 -0.27 -13.75 16 16 C 0.20 3.28 2.04 -69.08 -0.14 3.14 16 17 H 0.09 1.77 7.44 -51.93 -0.39 1.39 16 18 C -0.10 -1.50 4.05 -104.60 -0.42 -1.93 16 19 C -0.07 -0.95 9.05 -39.60 -0.36 -1.31 16 20 C -0.20 -2.45 9.04 -39.43 -0.36 -2.80 16 21 C 0.12 1.48 6.69 -39.22 -0.26 1.22 16 22 O -0.32 -3.80 10.50 -19.44 -0.20 -4.00 16 23 C 0.03 0.22 9.81 101.05 0.99 1.21 16 24 C -0.15 -1.94 9.99 -39.43 -0.39 -2.33 16 25 C -0.07 -0.94 8.69 -39.61 -0.34 -1.28 16 26 C -0.10 -1.42 2.68 -90.62 -0.24 -1.66 16 27 C -0.13 -2.23 7.72 37.16 0.29 -1.94 16 28 C -0.14 -1.83 8.78 37.16 0.33 -1.51 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.96 8.06 -51.93 -0.42 0.55 16 33 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 34 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 36 H 0.10 2.47 6.30 -51.93 -0.33 2.14 16 37 H 0.38 6.08 6.85 -40.82 -0.28 5.80 16 38 H 0.12 1.41 6.89 -52.49 -0.36 1.05 16 39 H 0.12 1.19 6.30 -52.48 -0.33 0.86 16 40 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 41 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 44 H 0.13 1.65 8.03 -52.49 -0.42 1.23 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 1.20 7.53 -51.93 -0.39 0.81 16 47 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 1.13 5.78 -51.93 -0.30 0.83 16 49 H 0.05 0.66 6.64 -51.93 -0.34 0.31 16 50 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -32.01 400.76 -8.67 -40.68 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.55 Total: 6.83 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.87 Total: 0.05 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.13 Total: -52.84 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.13 Total: -17.68 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.04 Total: 16.91 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.01 -8.67 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299328829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.191 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds