Wall clock time and date at job start Tue Mar 31 2020 19:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47116 * 2 1 4 4 C 1.36942 * 120.00105 * 272.19835 * 3 2 1 5 5 H 1.07998 * 120.00232 * 8.56126 * 4 3 2 6 6 C 1.38815 * 120.00127 * 188.57034 * 4 3 2 7 7 N 1.31620 * 119.99869 * 24.79161 * 6 4 3 8 8 Si 1.86799 * 119.99923 * 204.79839 * 6 4 3 9 9 H 1.48494 * 109.47148 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47001 * 119.99726 * 8 6 4 11 11 H 1.48503 * 109.47024 * 239.99776 * 8 6 4 12 12 C 1.46504 * 119.99959 * 92.19468 * 3 2 1 13 13 C 1.50704 * 109.46791 * 89.99965 * 12 3 2 14 14 O 1.21274 * 119.99861 * 0.02562 * 13 12 3 15 15 N 1.34774 * 119.99631 * 179.97438 * 13 12 3 16 16 C 1.46500 * 119.99772 * 180.02562 * 15 13 12 17 17 H 1.08996 * 109.47426 * 34.99782 * 16 15 13 18 18 C 1.50701 * 109.47406 * 155.00047 * 16 15 13 19 19 C 1.38273 * 119.93968 * 39.72323 * 18 16 15 20 20 C 1.38149 * 120.04964 * 179.72521 * 19 18 16 21 21 C 1.38725 * 119.94408 * 0.54956 * 20 19 18 22 22 O 1.35905 * 120.05619 * 179.74721 * 21 20 19 23 23 C 1.42897 * 116.99680 * 359.97438 * 22 21 20 24 24 C 1.38732 * 119.89103 * 359.72588 * 21 20 19 25 25 C 1.38148 * 119.94372 * 359.97438 * 24 21 20 26 26 C 1.53008 * 109.46835 * 274.99742 * 16 15 13 27 27 C 1.52999 * 109.46751 * 60.00230 * 26 16 15 28 28 C 1.53000 * 109.46951 * 179.97438 * 26 16 15 29 29 H 1.08995 * 109.47282 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46857 * 300.00267 * 1 2 3 31 31 H 1.09000 * 109.47127 * 59.99859 * 1 2 3 32 32 H 1.08999 * 109.46848 * 240.00462 * 2 1 3 33 33 H 1.09000 * 109.47127 * 120.00140 * 2 1 3 34 34 H 0.97000 * 120.00046 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.46971 * 329.99946 * 12 3 2 36 36 H 1.09000 * 109.47110 * 209.99784 * 12 3 2 37 37 H 0.96998 * 120.00051 * 0.02562 * 15 13 12 38 38 H 1.07999 * 119.97226 * 0.02562 * 19 18 16 39 39 H 1.08003 * 120.02587 * 180.26998 * 20 19 18 40 40 H 1.08997 * 109.47462 * 300.00092 * 23 22 21 41 41 H 1.09000 * 109.47422 * 60.00461 * 23 22 21 42 42 H 1.08998 * 109.47361 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.02861 * 179.97438 * 24 21 20 44 44 H 1.07999 * 119.96960 * 180.02562 * 25 24 21 45 45 H 1.08996 * 109.47146 * 300.00211 * 26 16 15 46 46 H 1.08996 * 109.47311 * 60.00082 * 27 26 16 47 47 H 1.09001 * 109.47092 * 179.97438 * 27 26 16 48 48 H 1.09002 * 109.47580 * 299.99763 * 27 26 16 49 49 H 1.08997 * 109.46974 * 60.00592 * 28 26 16 50 50 H 1.09002 * 109.47322 * 180.02562 * 28 26 16 51 51 H 1.08996 * 109.47527 * 300.00172 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2037 2.0419 -1.1851 5 1 1.8619 1.5997 -2.1092 6 6 2.8311 3.2802 -1.1986 7 7 3.6602 3.6084 -0.2306 8 14 2.4984 4.4805 -2.5907 9 1 1.5362 3.8758 -3.5464 10 1 1.9256 5.7339 -2.0373 11 1 3.7695 4.7859 -3.2953 12 6 2.3083 2.0556 1.2678 13 6 3.7464 1.8136 1.6481 14 8 4.4589 1.1441 0.9305 15 7 4.2408 2.3419 2.7851 16 6 5.6389 2.1071 3.1545 17 1 6.2521 2.0748 2.2540 18 6 6.1167 3.2227 4.0479 19 6 5.2771 3.7369 5.0188 20 6 5.7147 4.7557 5.8429 21 6 6.9936 5.2706 5.6880 22 8 7.4246 6.2764 6.4940 23 6 6.5077 6.7561 7.4795 24 6 7.8319 4.7568 4.7093 25 6 7.3918 3.7338 3.8919 26 6 5.7531 0.7744 3.8974 27 6 5.2681 -0.3582 2.9902 28 6 7.2133 0.5288 4.2826 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0983 4.4738 -0.2399 35 1 1.6553 1.6617 2.0465 36 1 2.1370 3.1264 1.1573 37 1 3.6710 2.8777 3.3588 38 1 4.2802 3.3384 5.1363 39 1 5.0602 5.1541 6.6040 40 1 5.6128 7.1377 6.9880 41 1 6.2347 5.9407 8.1493 42 1 6.9764 7.5555 8.0533 43 1 8.8278 5.1563 4.5865 44 1 8.0442 3.3332 3.1302 45 1 5.1398 0.8066 4.7978 46 1 5.8814 -0.3905 2.0898 47 1 5.3499 -1.3078 3.5193 48 1 4.2279 -0.1835 2.7153 49 1 7.5592 1.3356 4.9287 50 1 7.2948 -0.4209 4.8114 51 1 7.8262 0.4964 3.3819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299328829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:34 Heat of formation + Delta-G solvation = -41.819454 kcal Electronic energy + Delta-G solvation = -30294.878446 eV Core-core repulsion = 26387.870290 eV Total energy + Delta-G solvation = -3907.008156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.36399 -40.35523 -38.82694 -37.38838 -36.31370 -34.00352 -33.73495 -32.00675 -31.48065 -30.81601 -28.82483 -28.20097 -27.66930 -26.21634 -25.19455 -23.74097 -22.43683 -22.31369 -21.07797 -20.63501 -19.17180 -18.72435 -17.63151 -17.16836 -17.04011 -16.61290 -16.51910 -16.23280 -15.96849 -15.57050 -15.40288 -15.32470 -14.61790 -14.54393 -14.40355 -14.20940 -14.09165 -13.68862 -13.65068 -13.37040 -13.27050 -13.13684 -12.97756 -12.80875 -12.78006 -12.60669 -12.52667 -12.23802 -12.19941 -11.98023 -11.79119 -11.74589 -11.71025 -11.60453 -11.53501 -11.52672 -10.62813 -10.08218 -9.93172 -9.48726 -9.04023 -8.76895 -7.82548 -5.07647 0.40073 0.43956 1.45632 1.49457 1.58375 2.40472 2.52838 2.56685 2.78984 2.90436 3.33062 3.71407 3.73246 3.85723 3.97764 4.10839 4.15935 4.32963 4.40399 4.42487 4.43036 4.44818 4.55343 4.56990 4.67585 4.71406 4.76242 4.80163 4.82846 4.83850 4.90657 5.04118 5.07541 5.08479 5.09074 5.14441 5.23372 5.28490 5.30423 5.34604 5.39457 5.44761 5.58011 5.62534 5.68027 5.71172 5.80585 6.11747 6.31190 6.47504 7.09010 7.26217 7.89985 8.19887 8.33749 9.23778 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.003591 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.172803 B = 7795.072907 C = 9014.104066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 N -0.591 5.591 4 C -0.250 4.250 5 H 0.068 0.932 6 C -0.047 4.047 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.307 1.307 12 C 0.162 3.838 13 C 0.536 3.464 14 O -0.570 6.570 15 N -0.731 5.731 16 C 0.206 3.794 17 H 0.045 0.955 18 C -0.120 4.120 19 C -0.075 4.075 20 C -0.201 4.201 21 C 0.113 3.887 22 O -0.336 6.336 23 C 0.018 3.982 24 C -0.158 4.158 25 C -0.077 4.077 26 C -0.090 4.090 27 C -0.124 4.124 28 C -0.137 4.137 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.028 0.972 33 H 0.041 0.959 34 H 0.242 0.758 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.396 0.604 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.118 0.882 43 H 0.138 0.862 44 H 0.126 0.874 45 H 0.081 0.919 46 H 0.030 0.970 47 H 0.058 0.942 48 H 0.035 0.965 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 1.302 19.250 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 N -0.311 5.311 4 C -0.380 4.380 5 H 0.086 0.914 6 C -0.242 4.242 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.235 1.235 12 C 0.032 3.968 13 C 0.323 3.677 14 O -0.447 6.447 15 N -0.385 5.385 16 C 0.101 3.899 17 H 0.064 0.936 18 C -0.121 4.121 19 C -0.093 4.093 20 C -0.219 4.219 21 C 0.068 3.932 22 O -0.250 6.250 23 C -0.076 4.076 24 C -0.177 4.177 25 C -0.096 4.096 26 C -0.109 4.109 27 C -0.182 4.182 28 C -0.195 4.195 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.230 0.770 38 H 0.157 0.843 39 H 0.170 0.830 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.156 0.844 44 H 0.144 0.856 45 H 0.099 0.901 46 H 0.049 0.951 47 H 0.077 0.923 48 H 0.054 0.946 49 H 0.081 0.919 50 H 0.087 0.913 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.512 1.022 18.684 19.039 hybrid contribution -0.111 1.067 -1.006 1.470 sum 3.401 2.089 17.679 18.124 Atomic orbital electron populations 1.22132 0.96582 1.01031 1.01169 1.20841 0.93944 0.84764 0.98679 1.44110 1.74455 1.10700 1.01878 1.19416 1.31642 0.99689 0.87292 0.91442 1.25248 0.97906 1.00734 1.00354 1.70081 1.28617 1.20977 1.36095 0.85386 0.76691 0.79807 0.79591 1.19771 1.21446 1.23489 1.20675 0.90343 0.98872 0.86916 1.21785 0.91810 0.76069 0.78011 1.90484 1.61169 1.41792 1.51212 1.46107 1.11263 1.56049 1.25129 1.19476 0.83690 0.92131 0.94638 0.93648 1.19830 0.95205 0.98755 0.98329 1.20889 0.99571 0.95343 0.93519 1.21408 0.95838 1.00798 1.03888 1.19159 0.93293 0.89066 0.91670 1.86038 1.43588 1.49030 1.46309 1.23334 0.93909 1.00461 0.89925 1.20518 1.00987 0.99306 0.96895 1.20890 0.95505 0.95146 0.98062 1.21434 0.98037 0.93389 0.98057 1.21706 1.00384 0.97714 0.98374 1.21760 0.94515 1.02177 1.01027 0.91241 0.92992 0.94152 0.95348 0.94065 0.94824 0.91739 0.90238 0.76952 0.84321 0.82982 0.92043 0.91433 0.86383 0.84430 0.85593 0.90088 0.95100 0.92276 0.94593 0.91853 0.91346 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 10.23 71.98 0.74 -4.33 16 2 C 0.14 6.03 6.39 86.38 0.55 6.58 16 3 N -0.59 -29.44 2.02 -706.33 -1.43 -30.86 16 4 C -0.25 -13.94 9.70 84.03 0.82 -13.12 16 5 H 0.07 3.77 7.94 -2.91 -0.02 3.74 16 6 C -0.05 -2.64 4.90 84.86 0.42 -2.23 16 7 N -0.91 -52.29 8.95 21.65 0.19 -52.09 16 8 Si 0.95 46.00 29.62 68.60 2.03 48.03 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 10 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 12 C 0.16 7.40 5.42 85.63 0.46 7.87 16 13 C 0.54 24.59 4.25 87.66 0.37 24.96 16 14 O -0.57 -31.13 13.28 -3.01 -0.04 -31.17 16 15 N -0.73 -26.69 4.91 -446.09 -2.19 -28.89 16 16 C 0.21 6.93 2.04 44.25 0.09 7.02 16 17 H 0.05 1.93 7.44 -2.39 -0.02 1.92 16 18 C -0.12 -3.41 4.05 -19.85 -0.08 -3.49 16 19 C -0.07 -1.78 9.05 22.26 0.20 -1.58 16 20 C -0.20 -4.27 9.04 22.37 0.20 -4.07 16 21 C 0.11 2.69 6.69 22.50 0.15 2.84 16 22 O -0.34 -7.17 10.50 -92.48 -0.97 -8.14 16 23 C 0.02 0.22 9.81 113.37 1.11 1.34 16 24 C -0.16 -3.98 9.99 22.37 0.22 -3.76 16 25 C -0.08 -2.13 8.69 22.25 0.19 -1.93 16 26 C -0.09 -2.57 2.68 -10.79 -0.03 -2.60 16 27 C -0.12 -4.21 7.72 71.98 0.56 -3.65 16 28 C -0.14 -3.35 8.78 71.98 0.63 -2.72 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.03 1.25 8.06 -2.39 -0.02 1.23 16 33 H 0.04 1.65 8.06 -2.39 -0.02 1.63 16 34 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.06 2.46 8.07 -2.39 -0.02 2.45 16 36 H 0.08 3.97 6.30 -2.39 -0.02 3.95 16 37 H 0.40 12.26 6.85 -92.71 -0.64 11.62 16 38 H 0.14 2.79 6.89 -2.91 -0.02 2.77 16 39 H 0.15 2.33 6.30 -2.91 -0.02 2.31 16 40 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 41 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 42 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 44 H 0.13 3.40 8.03 -2.91 -0.02 3.38 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.03 1.22 7.53 -2.39 -0.02 1.20 16 47 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.03 1.37 5.78 -2.39 -0.01 1.35 16 49 H 0.06 1.45 6.64 -2.39 -0.02 1.43 16 50 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -71.30 400.76 4.48 -66.82 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.28 Total: 29.18 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 6.61 Total: 7.12 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -3.43 Total: -111.84 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.01 Total: -39.31 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -71.30 4.48 -66.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299328829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.001 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds