Wall clock time and date at job start Tue Mar 31 2020 18:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47096 * 2 1 4 4 C 1.46903 * 110.99981 * 66.04261 * 3 2 1 5 5 C 1.53000 * 109.47247 * 200.17569 * 4 3 2 6 6 C 1.46891 * 110.99889 * 189.99978 * 3 2 1 7 7 C 1.53002 * 109.47285 * 76.64665 * 6 3 2 8 8 O 1.42894 * 109.47057 * 63.92999 * 7 6 3 9 9 C 1.35713 * 116.99928 * 176.18735 * 8 7 6 10 10 C 1.38998 * 119.91273 * 0.29845 * 9 8 7 11 11 C 1.37702 * 120.08704 * 180.25823 * 10 9 8 12 12 C 1.39730 * 119.91163 * 359.44134 * 11 10 9 13 13 C 1.47606 * 120.08813 * 180.29946 * 12 11 10 14 14 O 1.21585 * 119.99836 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99873 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99900 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.47288 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47502 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99354 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00603 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99457 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00398 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46782 * 60.00333 * 22 20 18 24 24 H 1.48501 * 109.47076 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47290 * 300.00384 * 22 20 18 26 26 C 1.39733 * 119.82311 * 0.28081 * 12 11 10 27 27 C 1.37702 * 119.91406 * 359.97438 * 26 12 11 28 28 H 1.09007 * 109.47509 * 300.00037 * 1 2 3 29 29 H 1.08995 * 109.47410 * 60.00314 * 1 2 3 30 30 H 1.09006 * 109.47473 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47044 * 239.99514 * 2 1 3 32 32 H 1.09004 * 109.46884 * 119.99923 * 2 1 3 33 33 H 1.08997 * 109.47261 * 320.18103 * 4 3 2 34 34 H 1.09002 * 109.46605 * 80.18148 * 4 3 2 35 35 H 1.09008 * 109.46704 * 62.10672 * 5 4 3 36 36 H 1.08999 * 109.47410 * 182.10549 * 5 4 3 37 37 H 1.08998 * 109.46912 * 302.11350 * 5 4 3 38 38 H 1.08999 * 109.47200 * 316.64322 * 6 3 2 39 39 H 1.09001 * 109.46936 * 196.64854 * 6 3 2 40 40 H 1.08993 * 109.47040 * 303.92882 * 7 6 3 41 41 H 1.09006 * 109.46943 * 183.92982 * 7 6 3 42 42 H 1.07998 * 119.95358 * 359.97438 * 10 9 8 43 43 H 1.07997 * 120.04029 * 179.72062 * 11 10 9 44 44 H 0.96996 * 120.00344 * 0.02562 * 15 13 12 45 45 H 1.09003 * 109.46770 * 300.00269 * 16 15 13 46 46 H 1.09001 * 109.47114 * 59.99791 * 16 15 13 47 47 H 1.09003 * 109.47196 * 299.99715 * 17 16 15 48 48 H 1.09001 * 109.47453 * 59.99706 * 17 16 15 49 49 H 0.97009 * 119.99948 * 179.97438 * 21 20 18 50 50 H 1.08003 * 120.04579 * 180.02562 * 26 12 11 51 51 H 1.07996 * 119.95656 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 1.2533 5 6 1.7272 3.5814 1.0430 6 6 3.4684 1.4311 -0.2381 7 6 3.7488 1.1959 -1.7237 8 8 3.1840 2.2619 -2.4896 9 6 3.4125 2.2477 -3.8273 10 6 4.1617 1.2219 -4.3917 11 6 4.4002 1.2069 -5.7478 12 6 3.8781 2.2182 -6.5584 13 6 4.1257 2.2022 -8.0135 14 8 4.7845 1.3080 -8.5082 15 7 3.6217 3.1788 -8.7936 16 6 3.8670 3.1627 -10.2378 17 6 3.1906 4.3735 -10.8836 18 6 3.4434 4.3573 -12.3691 19 1 4.0278 3.5625 -12.8087 20 6 2.9279 5.3564 -13.1672 21 7 2.2159 6.3239 -12.6319 22 14 3.2420 5.3367 -15.0085 23 1 2.6867 4.0890 -15.5919 24 1 2.5853 6.5119 -15.6353 25 1 4.7041 5.3936 -15.2619 26 6 3.1205 3.2444 -5.9880 27 6 2.8909 3.2553 -4.6303 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.6627 1.7797 1.5546 34 1 2.3776 1.7814 2.0318 35 1 0.9933 3.8716 0.2910 36 1 1.5044 4.0874 1.9824 37 1 2.7243 3.8640 0.7056 38 1 3.9583 0.6561 0.3513 39 1 3.8537 2.4079 0.0542 40 1 3.3027 0.2506 -2.0325 41 1 4.8257 1.1606 -1.8890 42 1 4.5612 0.4383 -3.7651 43 1 4.9863 0.4120 -6.1849 44 1 3.0965 3.8924 -8.3988 45 1 4.9401 3.2040 -10.4245 46 1 3.4588 2.2470 -10.6655 47 1 2.1174 4.3327 -10.6969 48 1 3.5991 5.2891 -10.4558 49 1 1.8534 7.0271 -13.1934 50 1 2.7148 4.0277 -6.6112 51 1 2.3051 4.0479 -4.1887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345148896.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:12 Heat of formation + Delta-G solvation = -57.273616 kcal Electronic energy + Delta-G solvation = -27550.165270 eV Core-core repulsion = 23642.486971 eV Total energy + Delta-G solvation = -3907.678299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.48865 -39.34915 -38.46325 -36.92930 -34.86503 -32.87876 -32.23959 -32.05346 -31.17224 -30.41391 -29.06332 -27.97734 -24.99034 -24.09303 -23.52072 -23.01008 -22.19249 -20.97067 -20.78406 -20.03674 -18.53101 -17.39643 -16.75907 -16.46941 -16.36843 -15.80528 -15.30507 -15.22478 -14.92128 -14.83101 -14.72596 -14.47267 -14.29787 -13.88469 -13.66609 -13.38134 -13.24809 -13.18456 -12.77410 -12.49129 -12.44630 -12.30053 -12.24884 -12.17118 -11.93565 -11.80737 -11.46785 -11.19228 -11.07583 -11.01094 -10.93301 -10.83314 -10.63871 -10.29795 -9.82285 -9.46153 -9.20366 -9.17789 -8.78373 -8.56646 -8.39346 -8.18975 -6.07201 -4.09992 0.94515 1.25344 2.90140 3.08816 3.33018 3.33823 3.36671 3.39696 3.72466 3.96766 4.36009 4.42503 4.43883 4.53151 4.65633 4.70286 4.73057 4.79215 4.86171 4.90575 5.02586 5.05943 5.07278 5.14874 5.19634 5.21759 5.28820 5.29737 5.37905 5.45608 5.48754 5.57169 5.61764 5.82632 5.89423 5.91605 6.08385 6.17604 6.29003 6.37895 6.44403 6.51883 6.59798 6.63931 6.76483 6.94331 7.22591 7.53894 7.63965 7.90878 8.04718 8.30117 8.67885 8.95643 9.54611 11.04354 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.001652 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.876524 B =16949.796546 C =17497.352625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 N -0.532 5.532 4 C 0.047 3.953 5 C -0.146 4.146 6 C 0.053 3.947 7 C 0.064 3.936 8 O -0.293 6.293 9 C 0.152 3.848 10 C -0.223 4.223 11 C -0.021 4.021 12 C -0.169 4.169 13 C 0.552 3.448 14 O -0.552 6.552 15 N -0.718 5.718 16 C 0.121 3.879 17 C 0.012 3.988 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.045 4.045 27 C -0.159 4.159 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.137 0.863 44 H 0.396 0.604 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.023 0.977 48 H 0.023 0.977 49 H 0.262 0.738 50 H 0.136 0.864 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 -9.840 32.322 33.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.080 4.080 3 N -0.257 5.257 4 C -0.080 4.080 5 C -0.204 4.204 6 C -0.075 4.075 7 C -0.012 4.012 8 O -0.206 6.206 9 C 0.105 3.895 10 C -0.242 4.242 11 C -0.040 4.040 12 C -0.172 4.172 13 C 0.339 3.661 14 O -0.433 6.433 15 N -0.367 5.367 16 C -0.001 4.001 17 C -0.026 4.026 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 C -0.064 4.064 27 C -0.177 4.177 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.231 0.769 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.041 0.959 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.153 0.847 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.697 -9.913 31.628 33.152 hybrid contribution 0.393 -0.212 -0.207 0.492 sum -0.305 -10.125 31.420 33.013 Atomic orbital electron populations 1.21817 0.94580 1.01618 1.02707 1.22152 0.96552 0.88787 1.00559 1.62000 1.12889 1.15663 1.35153 1.22157 1.00934 0.95343 0.89594 1.21760 1.02670 0.94394 1.01554 1.22197 0.88932 1.02771 0.93597 1.22861 0.97583 0.89864 0.90867 1.86135 1.71459 1.47527 1.15430 1.19273 0.93201 0.93926 0.83085 1.21164 1.05908 1.00895 0.96216 1.21037 0.94564 0.96388 0.92006 1.20006 1.04655 0.98567 0.93992 1.18174 0.79736 0.82232 0.85997 1.90734 1.40541 1.36493 1.75484 1.46262 1.53791 1.26769 1.09913 1.21747 1.00569 1.01354 0.76394 1.19330 0.96030 0.91505 0.95690 1.21013 1.33540 1.09680 0.91839 0.92283 1.24994 0.94949 0.95333 0.99007 1.69948 1.34931 1.12605 1.35799 0.86564 0.78542 0.77483 0.84894 1.20119 1.21257 1.20124 1.21208 0.94457 0.96572 0.94184 1.20327 1.04953 0.99885 0.92578 0.92631 0.91528 0.92276 0.90772 0.95030 0.90446 0.94962 0.91668 0.92582 0.92618 0.92438 0.89408 0.91856 0.91521 0.85275 0.84552 0.76890 0.92439 0.92435 0.95887 0.95889 0.92801 0.84664 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.88 37.16 0.37 -0.50 16 2 C 0.05 0.28 5.50 -3.82 -0.02 0.26 16 3 N -0.53 -3.65 4.29 -234.63 -1.01 -4.66 16 4 C 0.05 0.28 5.54 -3.82 -0.02 0.26 16 5 C -0.15 -0.89 10.05 37.16 0.37 -0.51 16 6 C 0.05 0.32 5.20 -3.83 -0.02 0.30 16 7 C 0.06 0.45 4.94 37.16 0.18 0.63 16 8 O -0.29 -2.97 10.06 -18.84 -0.19 -3.16 16 9 C 0.15 1.69 6.70 -39.02 -0.26 1.43 16 10 C -0.22 -2.42 9.02 -39.50 -0.36 -2.78 16 11 C -0.02 -0.28 9.58 -39.22 -0.38 -0.65 16 12 C -0.17 -2.48 5.87 -104.96 -0.62 -3.10 16 13 C 0.55 10.10 7.76 -12.44 -0.10 10.01 16 14 O -0.55 -11.95 16.34 5.29 0.09 -11.86 16 15 N -0.72 -13.15 5.51 -61.33 -0.34 -13.49 16 16 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16 17 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 18 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 22 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C -0.05 -0.56 9.53 -39.22 -0.37 -0.94 16 27 C -0.16 -1.81 9.97 -39.50 -0.39 -2.20 16 28 H 0.05 0.30 6.25 -51.93 -0.32 -0.03 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.45 6.64 -51.93 -0.34 0.10 16 32 H 0.03 0.17 8.12 -51.93 -0.42 -0.26 16 33 H 0.08 0.42 5.87 -51.93 -0.30 0.12 16 34 H 0.03 0.17 7.99 -51.93 -0.42 -0.25 16 35 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.05 0.36 6.74 -51.93 -0.35 0.01 16 38 H 0.06 0.26 7.99 -51.93 -0.41 -0.16 16 39 H 0.09 0.53 6.49 -51.93 -0.34 0.19 16 40 H 0.06 0.42 6.45 -51.93 -0.33 0.09 16 41 H 0.07 0.39 7.44 -51.93 -0.39 0.00 16 42 H 0.13 1.06 6.27 -52.49 -0.33 0.74 16 43 H 0.14 1.79 7.64 -52.49 -0.40 1.38 16 44 H 0.40 6.27 6.49 -40.82 -0.27 6.00 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 50 H 0.14 1.47 6.40 -52.48 -0.34 1.13 16 51 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 411.18 15.07 6.20 6.20 Total: -1.00 -32.85 411.18 -10.03 -42.88 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.31 Total: 1.45 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.19 Total: -8.36 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.61 Total: -43.63 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.10 Total: -15.02 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.85 -10.03 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345148896.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.395 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds