Wall clock time and date at job start Tue Mar 31 2020 18:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47096 * 2 1 4 4 C 1.46903 * 110.99981 * 66.04261 * 3 2 1 5 5 C 1.53000 * 109.47247 * 200.17569 * 4 3 2 6 6 C 1.46891 * 110.99889 * 189.99978 * 3 2 1 7 7 C 1.53002 * 109.47285 * 76.64665 * 6 3 2 8 8 O 1.42894 * 109.47057 * 63.92999 * 7 6 3 9 9 C 1.35713 * 116.99928 * 176.18735 * 8 7 6 10 10 C 1.38998 * 119.91273 * 0.29845 * 9 8 7 11 11 C 1.37702 * 120.08704 * 180.25823 * 10 9 8 12 12 C 1.39730 * 119.91163 * 359.44134 * 11 10 9 13 13 C 1.47606 * 120.08813 * 180.29946 * 12 11 10 14 14 O 1.21585 * 119.99836 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99873 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99900 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.47288 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47502 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99354 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00603 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99457 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00398 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46782 * 60.00333 * 22 20 18 24 24 H 1.48501 * 109.47076 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47290 * 300.00384 * 22 20 18 26 26 C 1.39733 * 119.82311 * 0.28081 * 12 11 10 27 27 C 1.37702 * 119.91406 * 359.97438 * 26 12 11 28 28 H 1.09007 * 109.47509 * 300.00037 * 1 2 3 29 29 H 1.08995 * 109.47410 * 60.00314 * 1 2 3 30 30 H 1.09006 * 109.47473 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47044 * 239.99514 * 2 1 3 32 32 H 1.09004 * 109.46884 * 119.99923 * 2 1 3 33 33 H 1.08997 * 109.47261 * 320.18103 * 4 3 2 34 34 H 1.09002 * 109.46605 * 80.18148 * 4 3 2 35 35 H 1.09008 * 109.46704 * 62.10672 * 5 4 3 36 36 H 1.08999 * 109.47410 * 182.10549 * 5 4 3 37 37 H 1.08998 * 109.46912 * 302.11350 * 5 4 3 38 38 H 1.08999 * 109.47200 * 316.64322 * 6 3 2 39 39 H 1.09001 * 109.46936 * 196.64854 * 6 3 2 40 40 H 1.08993 * 109.47040 * 303.92882 * 7 6 3 41 41 H 1.09006 * 109.46943 * 183.92982 * 7 6 3 42 42 H 1.07998 * 119.95358 * 359.97438 * 10 9 8 43 43 H 1.07997 * 120.04029 * 179.72062 * 11 10 9 44 44 H 0.96996 * 120.00344 * 0.02562 * 15 13 12 45 45 H 1.09003 * 109.46770 * 300.00269 * 16 15 13 46 46 H 1.09001 * 109.47114 * 59.99791 * 16 15 13 47 47 H 1.09003 * 109.47196 * 299.99715 * 17 16 15 48 48 H 1.09001 * 109.47453 * 59.99706 * 17 16 15 49 49 H 0.97009 * 119.99948 * 179.97438 * 21 20 18 50 50 H 1.08003 * 120.04579 * 180.02562 * 26 12 11 51 51 H 1.07996 * 119.95656 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 1.2533 5 6 1.7272 3.5814 1.0430 6 6 3.4684 1.4311 -0.2381 7 6 3.7488 1.1959 -1.7237 8 8 3.1840 2.2619 -2.4896 9 6 3.4125 2.2477 -3.8273 10 6 4.1617 1.2219 -4.3917 11 6 4.4002 1.2069 -5.7478 12 6 3.8781 2.2182 -6.5584 13 6 4.1257 2.2022 -8.0135 14 8 4.7845 1.3080 -8.5082 15 7 3.6217 3.1788 -8.7936 16 6 3.8670 3.1627 -10.2378 17 6 3.1906 4.3735 -10.8836 18 6 3.4434 4.3573 -12.3691 19 1 4.0278 3.5625 -12.8087 20 6 2.9279 5.3564 -13.1672 21 7 2.2159 6.3239 -12.6319 22 14 3.2420 5.3367 -15.0085 23 1 2.6867 4.0890 -15.5919 24 1 2.5853 6.5119 -15.6353 25 1 4.7041 5.3936 -15.2619 26 6 3.1205 3.2444 -5.9880 27 6 2.8909 3.2553 -4.6303 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.6627 1.7797 1.5546 34 1 2.3776 1.7814 2.0318 35 1 0.9933 3.8716 0.2910 36 1 1.5044 4.0874 1.9824 37 1 2.7243 3.8640 0.7056 38 1 3.9583 0.6561 0.3513 39 1 3.8537 2.4079 0.0542 40 1 3.3027 0.2506 -2.0325 41 1 4.8257 1.1606 -1.8890 42 1 4.5612 0.4383 -3.7651 43 1 4.9863 0.4120 -6.1849 44 1 3.0965 3.8924 -8.3988 45 1 4.9401 3.2040 -10.4245 46 1 3.4588 2.2470 -10.6655 47 1 2.1174 4.3327 -10.6969 48 1 3.5991 5.2891 -10.4558 49 1 1.8534 7.0271 -13.1934 50 1 2.7148 4.0277 -6.6112 51 1 2.3051 4.0479 -4.1887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345148896.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:11 Heat of formation + Delta-G solvation = -77.716727 kcal Electronic energy + Delta-G solvation = -27551.051750 eV Core-core repulsion = 23642.486971 eV Total energy + Delta-G solvation = -3908.564779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45874 -40.51681 -39.11470 -37.86061 -36.62504 -34.85796 -32.74261 -32.65366 -32.32605 -31.60348 -30.48880 -28.53664 -26.85428 -24.84272 -24.26839 -23.95918 -22.99915 -22.74411 -21.56572 -21.08510 -19.42478 -18.71210 -18.34650 -17.32194 -17.27527 -16.76962 -16.48501 -16.47277 -16.10788 -15.90344 -15.84366 -15.49426 -15.04439 -14.91389 -14.76569 -14.52938 -14.29956 -14.22484 -14.02248 -13.51235 -13.46883 -13.22199 -13.06583 -12.91768 -12.78227 -12.71674 -12.54050 -12.44736 -12.33606 -12.23836 -12.08598 -11.81199 -11.67862 -11.51434 -11.47862 -11.40643 -10.95551 -10.59488 -10.11844 -10.07495 -9.24579 -9.19402 -8.23165 -6.33774 -0.10331 0.32709 1.42452 1.44950 1.52902 1.85185 2.19015 2.23872 2.45952 2.84915 2.90504 3.11393 3.72482 3.78743 3.82193 3.95502 3.99019 4.11053 4.19248 4.27769 4.31935 4.34484 4.40269 4.45601 4.48670 4.51148 4.57830 4.62037 4.64127 4.71463 4.78235 4.84344 4.91260 4.99073 5.01743 5.12756 5.14927 5.15306 5.23157 5.28734 5.35432 5.36638 5.42804 5.48722 5.57918 5.62304 5.78767 6.14047 6.16355 6.18795 6.44302 6.59903 6.78771 7.22324 7.35279 8.88451 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.001652 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.876524 B =16949.796546 C =17497.352625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 N -0.550 5.550 4 C 0.048 3.952 5 C -0.143 4.143 6 C 0.054 3.946 7 C 0.056 3.944 8 O -0.300 6.300 9 C 0.160 3.840 10 C -0.215 4.215 11 C -0.027 4.027 12 C -0.194 4.194 13 C 0.552 3.448 14 O -0.592 6.592 15 N -0.714 5.714 16 C 0.140 3.860 17 C 0.022 3.978 18 C -0.549 4.549 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.925 5.925 22 Si 0.966 3.034 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.269 1.269 26 C -0.042 4.042 27 C -0.163 4.163 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.158 0.842 43 H 0.132 0.868 44 H 0.409 0.591 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.010 0.990 48 H 0.010 0.990 49 H 0.266 0.734 50 H 0.146 0.854 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -10.379 33.994 35.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.276 5.276 4 C -0.079 4.079 5 C -0.201 4.201 6 C -0.074 4.074 7 C -0.019 4.019 8 O -0.213 6.213 9 C 0.113 3.887 10 C -0.234 4.234 11 C -0.046 4.046 12 C -0.197 4.197 13 C 0.342 3.658 14 O -0.475 6.475 15 N -0.364 5.364 16 C 0.017 3.983 17 C -0.015 4.015 18 C -0.587 4.587 19 H 0.077 0.923 20 C -0.192 4.192 21 N -0.565 5.565 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.194 1.194 26 C -0.060 4.060 27 C -0.181 4.181 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.176 0.824 43 H 0.150 0.850 44 H 0.246 0.754 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.028 0.972 48 H 0.028 0.972 49 H 0.075 0.925 50 H 0.164 0.836 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.523 -10.445 33.338 34.940 hybrid contribution 0.306 -0.060 -0.540 0.623 sum -0.217 -10.505 32.799 34.441 Atomic orbital electron populations 1.21794 0.94763 1.01971 1.01973 1.22159 0.96403 0.88519 1.00947 1.61992 1.13551 1.16225 1.35806 1.22154 1.01314 0.94919 0.89539 1.21729 1.01814 0.94902 1.01609 1.22225 0.88691 1.03394 0.93040 1.23161 0.98541 0.89203 0.91041 1.86152 1.71526 1.48791 1.14814 1.19406 0.92137 0.93464 0.83736 1.21358 1.05231 1.01423 0.95352 1.21099 0.94586 0.95933 0.92945 1.19764 1.07497 1.00776 0.91664 1.18714 0.78516 0.81101 0.87471 1.90700 1.42332 1.37899 1.76548 1.46068 1.54258 1.27603 1.08514 1.21269 0.99367 0.99324 0.78385 1.19143 0.95259 0.92187 0.94939 1.21434 1.33841 1.09985 0.93445 0.92279 1.25874 0.94533 0.94833 1.03920 1.70054 1.35630 1.13195 1.37595 0.85487 0.78711 0.77812 0.78963 1.19364 1.20537 1.19361 1.21290 0.93777 0.96083 0.94891 1.20526 1.04974 1.00508 0.92136 0.92312 0.93261 0.91411 0.90899 0.94019 0.90266 0.94046 0.93252 0.91470 0.93089 0.90457 0.89595 0.91226 0.89832 0.82425 0.85019 0.75424 0.93384 0.93401 0.97198 0.97178 0.92523 0.83610 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.88 71.98 0.71 -0.81 16 2 C 0.05 0.47 5.50 86.30 0.47 0.94 16 3 N -0.55 -6.50 4.29 -896.24 -3.84 -10.34 16 4 C 0.05 0.48 5.54 86.30 0.48 0.96 16 5 C -0.14 -1.56 10.05 71.98 0.72 -0.84 16 6 C 0.05 0.51 5.20 86.31 0.45 0.96 16 7 C 0.06 0.63 4.94 71.98 0.36 0.98 16 8 O -0.30 -5.39 10.06 -90.35 -0.91 -6.30 16 9 C 0.16 3.23 6.70 22.63 0.15 3.38 16 10 C -0.22 -4.21 9.02 22.33 0.20 -4.01 16 11 C -0.03 -0.68 9.58 22.50 0.22 -0.46 16 12 C -0.19 -5.66 5.87 -20.08 -0.12 -5.78 16 13 C 0.55 20.61 7.76 86.72 0.67 21.28 16 14 O -0.59 -26.30 16.34 -3.98 -0.07 -26.37 16 15 N -0.71 -26.68 5.51 -466.21 -2.57 -29.24 16 16 C 0.14 6.28 5.61 86.38 0.48 6.76 16 17 C 0.02 1.14 5.09 29.85 0.15 1.29 16 18 C -0.55 -31.11 9.11 25.60 0.23 -30.87 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 20 C 0.01 0.41 5.46 84.65 0.46 0.88 16 21 N -0.93 -54.63 13.29 21.45 0.28 -54.34 16 22 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 C -0.04 -1.00 9.53 22.50 0.21 -0.78 16 27 C -0.16 -3.43 9.97 22.32 0.22 -3.21 16 28 H 0.06 0.55 6.25 -2.38 -0.01 0.54 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.07 0.73 6.64 -2.39 -0.02 0.72 16 32 H 0.04 0.33 8.12 -2.38 -0.02 0.31 16 33 H 0.08 0.75 5.87 -2.39 -0.01 0.73 16 34 H 0.04 0.34 7.99 -2.39 -0.02 0.32 16 35 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.60 6.74 -2.39 -0.02 0.58 16 38 H 0.08 0.44 7.99 -2.39 -0.02 0.42 16 39 H 0.09 0.85 6.49 -2.39 -0.02 0.84 16 40 H 0.07 0.72 6.45 -2.39 -0.02 0.71 16 41 H 0.08 0.68 7.44 -2.38 -0.02 0.67 16 42 H 0.16 2.11 6.27 -2.91 -0.02 2.09 16 43 H 0.13 3.44 7.64 -2.91 -0.02 3.42 16 44 H 0.41 13.08 6.49 -92.71 -0.60 12.48 16 45 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.05 2.22 8.14 -2.39 -0.02 2.21 16 47 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 50 H 0.15 3.05 6.40 -2.91 -0.02 3.03 16 51 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -70.61 411.18 1.33 -69.28 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.32 Total: 20.61 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 6.08 Total: -9.33 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -6.13 Total: -93.93 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.97 Total: -32.67 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -70.61 1.33 -69.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345148896.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.441 kcal (2) G-P(sol) polarization free energy of solvation -70.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds