Wall clock time and date at job start Tue Mar 31 2020 18:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47188 * 2 1 4 4 C 1.46901 * 111.00318 * 294.22873 * 3 2 1 5 5 C 1.53011 * 109.46725 * 288.48838 * 4 3 2 6 6 C 1.46905 * 111.00061 * 58.17589 * 3 2 1 7 7 C 1.53004 * 109.46701 * 66.04426 * 6 3 2 8 8 O 1.42904 * 109.47065 * 65.00222 * 7 6 3 9 9 C 1.42894 * 114.00228 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47185 * 180.02562 * 9 8 7 11 11 N 1.46498 * 109.47129 * 65.00234 * 10 9 8 12 12 C 1.34776 * 119.99723 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00573 * 359.97438 * 12 11 10 14 14 C 1.47646 * 119.99627 * 180.02562 * 12 11 10 15 15 C 1.40013 * 119.89779 * 0.24286 * 14 12 11 16 16 C 1.36319 * 120.10562 * 180.26064 * 15 14 12 17 17 C 1.40891 * 119.89064 * 359.47047 * 16 15 14 18 18 C 1.41108 * 120.09841 * 180.30192 * 17 16 15 19 19 H 1.07994 * 120.00470 * 332.75401 * 18 17 16 20 20 C 1.40227 * 119.99861 * 152.76106 * 18 17 16 21 21 N 1.30647 * 120.00010 * 342.25640 * 20 18 17 22 22 Si 1.86803 * 120.00231 * 162.25363 * 20 18 17 23 23 H 1.48501 * 109.46712 * 94.96423 * 22 20 18 24 24 H 1.48492 * 109.47158 * 214.96742 * 22 20 18 25 25 H 1.48503 * 109.46725 * 334.96565 * 22 20 18 26 26 C 1.40885 * 119.79480 * 0.27907 * 17 16 15 27 27 C 1.36315 * 119.88940 * 0.02562 * 26 17 16 28 28 H 1.08996 * 109.46993 * 177.88163 * 1 2 3 29 29 H 1.09002 * 109.46632 * 297.87847 * 1 2 3 30 30 H 1.09001 * 109.47254 * 57.87343 * 1 2 3 31 31 H 1.08995 * 109.47102 * 240.00852 * 2 1 3 32 32 H 1.08998 * 109.47407 * 120.00002 * 2 1 3 33 33 H 1.08997 * 109.47113 * 48.48418 * 4 3 2 34 34 H 1.09000 * 109.47455 * 168.48977 * 4 3 2 35 35 H 1.09002 * 109.46792 * 186.38834 * 5 4 3 36 36 H 1.09000 * 109.46810 * 306.38603 * 5 4 3 37 37 H 1.08995 * 109.47236 * 66.38911 * 5 4 3 38 38 H 1.09000 * 109.47011 * 306.04888 * 6 3 2 39 39 H 1.08998 * 109.47190 * 186.04287 * 6 3 2 40 40 H 1.08996 * 109.47787 * 305.00345 * 7 6 3 41 41 H 1.08997 * 109.47308 * 185.00024 * 7 6 3 42 42 H 1.08999 * 109.46868 * 60.00216 * 9 8 7 43 43 H 1.08998 * 109.47276 * 299.99923 * 9 8 7 44 44 H 1.09002 * 109.46953 * 305.00121 * 10 9 8 45 45 H 1.09001 * 109.47283 * 185.00149 * 10 9 8 46 46 H 0.96994 * 120.00059 * 359.97438 * 11 10 9 47 47 H 1.08001 * 119.94893 * 0.03554 * 15 14 12 48 48 H 1.08003 * 120.05017 * 179.75097 * 16 15 14 49 49 H 0.96999 * 120.00055 * 180.02562 * 21 20 18 50 50 H 1.07999 * 120.05332 * 180.02562 * 26 17 16 51 51 H 1.08009 * 119.94673 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6646 2.0690 -1.2506 5 6 2.5118 1.5103 -2.3957 6 6 1.5133 2.1224 1.1653 7 6 2.1070 1.5264 2.4433 8 8 3.5213 1.7307 2.4519 9 6 4.1770 1.2090 3.6094 10 6 5.6790 1.4837 3.5120 11 7 5.9147 2.9290 3.5516 12 6 7.1720 3.4090 3.4794 13 8 8.1107 2.6425 3.3818 14 6 7.4095 4.8656 3.5199 15 6 6.3274 5.7462 3.6386 16 6 6.5415 7.0921 3.6711 17 6 7.8550 7.5962 3.5963 18 6 8.0820 8.9883 3.6359 19 1 7.3196 9.6699 3.2890 20 6 9.2977 9.4867 4.1258 21 7 10.0700 8.7251 4.8541 22 14 9.8132 11.2396 3.7369 23 1 9.4046 12.1340 4.8497 24 1 11.2877 11.2969 3.5716 25 1 9.1567 11.6813 2.4802 26 6 8.9410 6.7060 3.4823 27 6 8.7166 5.3620 3.4443 28 1 -0.3633 -1.0269 -0.0380 29 1 -0.3633 0.4806 0.9084 30 1 -0.3634 0.5465 -0.8703 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.6088 1.9060 -1.4668 34 1 1.8534 3.1375 -1.1467 35 1 2.3312 2.0930 -3.2991 36 1 3.5671 1.5703 -2.1296 37 1 2.2406 0.4699 -2.5742 38 1 0.4266 2.0460 1.1995 39 1 1.8015 3.1706 1.0853 40 1 1.8941 0.4580 2.4790 41 1 1.6642 2.0142 3.3116 42 1 4.0070 0.1340 3.6696 43 1 3.7771 1.6906 4.5016 44 1 6.0625 1.0785 2.5755 45 1 6.1902 1.0091 4.3496 46 1 5.1658 3.5406 3.6291 47 1 5.3213 5.3586 3.7008 48 1 5.7058 7.7706 3.7586 49 1 10.9108 9.0700 5.1932 50 1 9.9496 7.0878 3.4251 51 1 9.5485 4.6787 3.3565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348153925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:21 Heat of formation + Delta-G solvation = -67.993984 kcal Electronic energy + Delta-G solvation = -28171.138021 eV Core-core repulsion = 24262.994852 eV Total energy + Delta-G solvation = -3908.143169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.27085 -38.90709 -37.59675 -36.93632 -34.19066 -33.80203 -31.98079 -31.13415 -30.24802 -29.64068 -28.71850 -27.39597 -25.72837 -24.53481 -22.76201 -22.42867 -21.67271 -20.69791 -19.98102 -19.56981 -17.47669 -17.13101 -16.86215 -16.78599 -16.05846 -15.81106 -15.32592 -14.86123 -14.66788 -14.44451 -14.16819 -13.96930 -13.71638 -13.49879 -13.33544 -13.14226 -12.82820 -12.61151 -12.47935 -12.39292 -12.17562 -12.13183 -11.92832 -11.78057 -11.65081 -11.42710 -11.37445 -11.32286 -11.18678 -11.02846 -10.92867 -10.70031 -10.55999 -10.00118 -9.69376 -9.47224 -9.29110 -8.89809 -8.49302 -8.44852 -7.63776 -7.48336 -6.96354 -4.54076 2.30718 2.94460 2.99182 3.05006 3.08249 3.50609 3.66452 3.79344 3.91352 3.96655 4.61665 4.63913 4.65333 4.79972 4.91445 4.96662 5.00472 5.03056 5.14027 5.14684 5.18940 5.27852 5.30586 5.31890 5.39440 5.55337 5.61984 5.70219 5.73065 5.78709 5.80410 5.84538 5.94145 6.05528 6.10274 6.22618 6.34968 6.82417 6.86783 6.87199 6.89354 7.03566 7.10960 7.15425 7.18819 7.50330 7.67589 7.84129 7.93836 8.11712 8.34998 8.48613 8.68797 8.81221 9.17150 9.97179 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.002103 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.604081 B =13312.561903 C =14266.260593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.045 3.955 3 N -0.525 5.525 4 C 0.046 3.954 5 C -0.147 4.147 6 C 0.051 3.949 7 C 0.066 3.934 8 O -0.364 6.364 9 C 0.050 3.950 10 C 0.128 3.872 11 N -0.736 5.736 12 C 0.571 3.429 13 O -0.576 6.576 14 C -0.278 4.278 15 C -0.048 4.048 16 C -0.234 4.234 17 C 0.130 3.870 18 C -0.448 4.448 19 H 0.084 0.916 20 C 0.075 3.925 21 N -0.772 5.772 22 Si 0.911 3.089 23 H -0.268 1.268 24 H -0.273 1.273 25 H -0.258 1.258 26 C -0.180 4.180 27 C -0.037 4.037 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.399 0.601 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.286 0.714 50 H 0.117 0.883 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.740 -12.444 -5.996 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.083 4.083 3 N -0.248 5.248 4 C -0.081 4.081 5 C -0.205 4.205 6 C -0.077 4.077 7 C -0.011 4.011 8 O -0.283 6.283 9 C -0.027 4.027 10 C 0.004 3.996 11 N -0.389 5.389 12 C 0.365 3.635 13 O -0.458 6.458 14 C -0.283 4.283 15 C -0.068 4.068 16 C -0.253 4.253 17 C 0.127 3.873 18 C -0.476 4.476 19 H 0.102 0.898 20 C -0.147 4.147 21 N -0.396 5.396 22 Si 0.735 3.265 23 H -0.193 1.193 24 H -0.198 1.198 25 H -0.181 1.181 26 C -0.199 4.199 27 C -0.056 4.056 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.234 0.766 47 H 0.107 0.893 48 H 0.115 0.885 49 H 0.097 0.903 50 H 0.135 0.865 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.237 -12.923 -6.039 21.613 hybrid contribution -1.242 0.878 0.226 1.537 sum -17.479 -12.045 -5.813 22.009 Atomic orbital electron populations 1.22452 0.98632 1.02338 1.01980 1.22222 0.92398 0.90762 1.02964 1.62197 1.59091 1.01821 1.01729 1.22135 0.97372 0.98820 0.89810 1.21768 1.01404 1.00416 0.96908 1.22205 0.96651 0.99159 0.89654 1.22498 0.82560 0.99255 0.96817 1.88092 1.18657 1.80069 1.41440 1.22764 0.93106 0.98156 0.88654 1.21169 0.92597 0.83268 1.02575 1.45797 1.08959 1.06572 1.77604 1.18580 0.81472 0.89132 0.74291 1.90632 1.42610 1.59965 1.52601 1.18932 0.94701 0.89955 1.24700 1.20372 0.95508 0.93791 0.97083 1.20680 0.96742 0.93911 1.14005 1.17774 0.90975 0.93432 0.85139 1.19781 1.00005 0.92479 1.35302 0.89818 1.26076 0.95575 1.00520 0.92480 1.69750 1.10381 1.38014 1.21416 0.86244 0.78668 0.81388 0.80226 1.19344 1.19768 1.18144 1.20937 0.99478 0.91694 1.07837 1.20484 0.94489 0.95271 0.95355 0.92102 0.92432 0.92384 0.90542 0.90654 0.94670 0.90794 0.92465 0.91416 0.93111 0.93043 0.89694 0.93466 0.93174 0.92323 0.92993 0.91167 0.90796 0.76628 0.89251 0.88527 0.90263 0.86542 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 9.23 37.16 0.34 -0.89 16 2 C 0.04 0.35 5.68 -3.82 -0.02 0.33 16 3 N -0.52 -5.02 4.62 -234.62 -1.08 -6.11 16 4 C 0.05 0.40 5.57 -3.82 -0.02 0.38 16 5 C -0.15 -1.24 9.83 37.16 0.37 -0.87 16 6 C 0.05 0.45 5.06 -3.82 -0.02 0.43 16 7 C 0.07 0.60 5.99 37.16 0.22 0.82 16 8 O -0.36 -4.46 10.24 -35.23 -0.36 -4.82 16 9 C 0.05 0.55 6.07 37.16 0.23 0.77 16 10 C 0.13 1.85 6.06 -4.04 -0.02 1.83 16 11 N -0.74 -12.83 5.45 -61.31 -0.33 -13.16 16 12 C 0.57 12.66 7.76 -12.42 -0.10 12.57 16 13 O -0.58 -14.36 16.32 5.29 0.09 -14.28 16 14 C -0.28 -6.57 5.89 -104.73 -0.62 -7.19 16 15 C -0.05 -1.06 9.47 -39.61 -0.38 -1.44 16 16 C -0.23 -5.53 9.73 -39.27 -0.38 -5.91 16 17 C 0.13 3.37 5.54 -106.80 -0.59 2.78 16 18 C -0.45 -11.33 9.03 -37.75 -0.34 -11.67 16 19 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 20 C 0.07 1.79 5.11 -17.31 -0.09 1.70 16 21 N -0.77 -19.28 11.12 55.56 0.62 -18.66 16 22 Si 0.91 17.71 29.60 -169.99 -5.03 12.68 16 23 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 26 C -0.18 -4.71 8.62 -39.27 -0.34 -5.04 16 27 C -0.04 -0.92 9.52 -39.61 -0.38 -1.30 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.36 6.36 -51.93 -0.33 0.03 16 30 H 0.06 0.38 6.25 -51.93 -0.32 0.05 16 31 H 0.08 0.60 6.61 -51.93 -0.34 0.25 16 32 H 0.08 0.61 6.45 -51.93 -0.34 0.27 16 33 H 0.04 0.27 5.99 -51.93 -0.31 -0.04 16 34 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.39 6.90 -51.93 -0.36 0.03 16 38 H 0.05 0.37 5.99 -51.93 -0.31 0.06 16 39 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 40 H 0.05 0.38 6.37 -51.93 -0.33 0.05 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.40 6.31 6.47 -40.82 -0.26 6.05 16 47 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 48 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 49 H 0.29 6.44 8.29 -40.82 -0.34 6.10 16 50 H 0.12 3.10 6.35 -52.49 -0.33 2.77 16 51 H 0.10 2.49 7.63 -52.48 -0.40 2.09 16 LS Contribution 405.69 15.07 6.11 6.11 Total: -1.00 -30.19 405.69 -10.28 -40.46 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -8.15 Total: 10.47 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.14 Total: -12.70 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.80 Total: -37.93 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.27 Total: -19.09 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.19 -10.28 -40.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348153925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.530 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds