Wall clock time and date at job start Tue Mar 31 2020 18:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47188 * 2 1 4 4 C 1.46901 * 111.00318 * 294.22873 * 3 2 1 5 5 C 1.53011 * 109.46725 * 288.48838 * 4 3 2 6 6 C 1.46905 * 111.00061 * 58.17589 * 3 2 1 7 7 C 1.53004 * 109.46701 * 66.04426 * 6 3 2 8 8 O 1.42904 * 109.47065 * 65.00222 * 7 6 3 9 9 C 1.42894 * 114.00228 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47185 * 180.02562 * 9 8 7 11 11 N 1.46498 * 109.47129 * 65.00234 * 10 9 8 12 12 C 1.34776 * 119.99723 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00573 * 359.97438 * 12 11 10 14 14 C 1.47646 * 119.99627 * 180.02562 * 12 11 10 15 15 C 1.40013 * 119.89779 * 0.24286 * 14 12 11 16 16 C 1.36319 * 120.10562 * 180.26064 * 15 14 12 17 17 C 1.40891 * 119.89064 * 359.47047 * 16 15 14 18 18 C 1.41108 * 120.09841 * 180.30192 * 17 16 15 19 19 H 1.07994 * 120.00470 * 332.75401 * 18 17 16 20 20 C 1.40227 * 119.99861 * 152.76106 * 18 17 16 21 21 N 1.30647 * 120.00010 * 342.25640 * 20 18 17 22 22 Si 1.86803 * 120.00231 * 162.25363 * 20 18 17 23 23 H 1.48501 * 109.46712 * 94.96423 * 22 20 18 24 24 H 1.48492 * 109.47158 * 214.96742 * 22 20 18 25 25 H 1.48503 * 109.46725 * 334.96565 * 22 20 18 26 26 C 1.40885 * 119.79480 * 0.27907 * 17 16 15 27 27 C 1.36315 * 119.88940 * 0.02562 * 26 17 16 28 28 H 1.08996 * 109.46993 * 177.88163 * 1 2 3 29 29 H 1.09002 * 109.46632 * 297.87847 * 1 2 3 30 30 H 1.09001 * 109.47254 * 57.87343 * 1 2 3 31 31 H 1.08995 * 109.47102 * 240.00852 * 2 1 3 32 32 H 1.08998 * 109.47407 * 120.00002 * 2 1 3 33 33 H 1.08997 * 109.47113 * 48.48418 * 4 3 2 34 34 H 1.09000 * 109.47455 * 168.48977 * 4 3 2 35 35 H 1.09002 * 109.46792 * 186.38834 * 5 4 3 36 36 H 1.09000 * 109.46810 * 306.38603 * 5 4 3 37 37 H 1.08995 * 109.47236 * 66.38911 * 5 4 3 38 38 H 1.09000 * 109.47011 * 306.04888 * 6 3 2 39 39 H 1.08998 * 109.47190 * 186.04287 * 6 3 2 40 40 H 1.08996 * 109.47787 * 305.00345 * 7 6 3 41 41 H 1.08997 * 109.47308 * 185.00024 * 7 6 3 42 42 H 1.08999 * 109.46868 * 60.00216 * 9 8 7 43 43 H 1.08998 * 109.47276 * 299.99923 * 9 8 7 44 44 H 1.09002 * 109.46953 * 305.00121 * 10 9 8 45 45 H 1.09001 * 109.47283 * 185.00149 * 10 9 8 46 46 H 0.96994 * 120.00059 * 359.97438 * 11 10 9 47 47 H 1.08001 * 119.94893 * 0.03554 * 15 14 12 48 48 H 1.08003 * 120.05017 * 179.75097 * 16 15 14 49 49 H 0.96999 * 120.00055 * 180.02562 * 21 20 18 50 50 H 1.07999 * 120.05332 * 180.02562 * 26 17 16 51 51 H 1.08009 * 119.94673 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6646 2.0690 -1.2506 5 6 2.5118 1.5103 -2.3957 6 6 1.5133 2.1224 1.1653 7 6 2.1070 1.5264 2.4433 8 8 3.5213 1.7307 2.4519 9 6 4.1770 1.2090 3.6094 10 6 5.6790 1.4837 3.5120 11 7 5.9147 2.9290 3.5516 12 6 7.1720 3.4090 3.4794 13 8 8.1107 2.6425 3.3818 14 6 7.4095 4.8656 3.5199 15 6 6.3274 5.7462 3.6386 16 6 6.5415 7.0921 3.6711 17 6 7.8550 7.5962 3.5963 18 6 8.0820 8.9883 3.6359 19 1 7.3196 9.6699 3.2890 20 6 9.2977 9.4867 4.1258 21 7 10.0700 8.7251 4.8541 22 14 9.8132 11.2396 3.7369 23 1 9.4046 12.1340 4.8497 24 1 11.2877 11.2969 3.5716 25 1 9.1567 11.6813 2.4802 26 6 8.9410 6.7060 3.4823 27 6 8.7166 5.3620 3.4443 28 1 -0.3633 -1.0269 -0.0380 29 1 -0.3633 0.4806 0.9084 30 1 -0.3634 0.5465 -0.8703 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.6088 1.9060 -1.4668 34 1 1.8534 3.1375 -1.1467 35 1 2.3312 2.0930 -3.2991 36 1 3.5671 1.5703 -2.1296 37 1 2.2406 0.4699 -2.5742 38 1 0.4266 2.0460 1.1995 39 1 1.8015 3.1706 1.0853 40 1 1.8941 0.4580 2.4790 41 1 1.6642 2.0142 3.3116 42 1 4.0070 0.1340 3.6696 43 1 3.7771 1.6906 4.5016 44 1 6.0625 1.0785 2.5755 45 1 6.1902 1.0091 4.3496 46 1 5.1658 3.5406 3.6291 47 1 5.3213 5.3586 3.7008 48 1 5.7058 7.7706 3.7586 49 1 10.9108 9.0700 5.1932 50 1 9.9496 7.0878 3.4251 51 1 9.5485 4.6787 3.3565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348153925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:20 Heat of formation + Delta-G solvation = -86.962308 kcal Electronic energy + Delta-G solvation = -28171.960549 eV Core-core repulsion = 24262.994852 eV Total energy + Delta-G solvation = -3908.965697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.77425 -39.80882 -38.95158 -38.28024 -35.69406 -35.57874 -32.73127 -32.16653 -31.71538 -31.36177 -29.98352 -28.18717 -27.46126 -25.13311 -24.16605 -23.28303 -23.10756 -22.48014 -21.30340 -20.60765 -19.34212 -18.53617 -17.87725 -17.59925 -17.13837 -16.98796 -16.72625 -16.01465 -15.76891 -15.73683 -15.62665 -15.08900 -15.03038 -14.87825 -14.37983 -14.31196 -14.02962 -13.97842 -13.77099 -13.63766 -13.25774 -13.18880 -13.06955 -12.92121 -12.81472 -12.64897 -12.62775 -12.37209 -12.30497 -12.19562 -12.05840 -11.77705 -11.71275 -11.34920 -11.33476 -11.10816 -10.73777 -10.42730 -10.02833 -9.55619 -9.37609 -9.08660 -8.77686 -6.46521 0.45878 1.15798 1.38248 1.43007 1.55484 2.12842 2.19811 2.44018 2.75278 2.82120 3.03025 3.70077 3.90704 4.01433 4.11156 4.21142 4.24521 4.31520 4.31728 4.36436 4.39287 4.42096 4.44378 4.49638 4.52259 4.57662 4.62891 4.68691 4.77388 4.78145 4.93040 4.98120 4.98400 5.03777 5.07699 5.13225 5.14241 5.20653 5.26968 5.27384 5.44456 5.59194 5.61846 5.79786 5.96142 6.02923 6.17188 6.21743 6.23905 6.42689 6.56925 6.76145 6.78131 6.90653 7.47903 8.18990 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.002103 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.604081 B =13312.561903 C =14266.260593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.045 3.955 3 N -0.547 5.547 4 C 0.046 3.954 5 C -0.144 4.144 6 C 0.051 3.949 7 C 0.064 3.936 8 O -0.392 6.392 9 C 0.060 3.940 10 C 0.124 3.876 11 N -0.717 5.717 12 C 0.568 3.432 13 O -0.611 6.611 14 C -0.290 4.290 15 C -0.037 4.037 16 C -0.244 4.244 17 C 0.102 3.898 18 C -0.475 4.475 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.806 5.806 22 Si 0.988 3.012 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.254 1.254 26 C -0.200 4.200 27 C -0.051 4.051 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.409 0.591 47 H 0.132 0.868 48 H 0.117 0.883 49 H 0.295 0.705 50 H 0.100 0.900 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.371 -12.388 -5.774 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.083 4.083 3 N -0.271 5.271 4 C -0.081 4.081 5 C -0.201 4.201 6 C -0.077 4.077 7 C -0.013 4.013 8 O -0.312 6.312 9 C -0.017 4.017 10 C 0.000 4.000 11 N -0.369 5.369 12 C 0.362 3.638 13 O -0.496 6.496 14 C -0.295 4.295 15 C -0.055 4.055 16 C -0.263 4.263 17 C 0.099 3.901 18 C -0.502 4.502 19 H 0.110 0.890 20 C -0.185 4.185 21 N -0.430 5.430 22 Si 0.808 3.192 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.177 1.177 26 C -0.219 4.219 27 C -0.070 4.070 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.246 0.754 47 H 0.149 0.851 48 H 0.135 0.865 49 H 0.106 0.894 50 H 0.118 0.882 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.928 -12.890 -5.811 23.626 hybrid contribution -0.470 0.751 0.152 0.899 sum -19.398 -12.139 -5.659 23.572 Atomic orbital electron populations 1.22374 0.97273 1.02963 1.02039 1.22213 0.93488 0.89826 1.02725 1.62188 1.60059 1.02688 1.02159 1.22126 0.98066 0.98254 0.89669 1.21735 0.99937 1.01104 0.97371 1.22220 0.97666 0.98270 0.89505 1.22658 0.80938 1.00243 0.97419 1.88050 1.20509 1.80545 1.42097 1.22702 0.90210 0.99856 0.88951 1.21377 0.95715 0.80942 1.01920 1.45654 1.07465 1.08355 1.75412 1.18438 0.82645 0.88352 0.74394 1.90610 1.44081 1.60475 1.54407 1.19203 0.94490 0.91432 1.24337 1.20680 0.96920 0.92948 0.94981 1.20956 0.96415 0.95065 1.13884 1.18145 0.91962 0.94110 0.85885 1.20102 1.01377 0.92546 1.36192 0.88996 1.27011 0.94976 1.04971 0.91551 1.69803 1.10991 1.40219 1.21995 0.85097 0.78290 0.75663 0.80182 1.18245 1.19221 1.17728 1.20858 0.99128 0.92245 1.09682 1.20554 0.95483 0.94936 0.96067 0.91186 0.92065 0.92550 0.90904 0.90809 0.93383 0.91671 0.91466 0.93638 0.92440 0.91240 0.91105 0.92291 0.91527 0.89786 0.91183 0.92904 0.90259 0.75439 0.85083 0.86531 0.89431 0.88191 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 9.23 71.98 0.66 -1.27 16 2 C 0.05 0.64 5.68 86.30 0.49 1.13 16 3 N -0.55 -9.77 4.62 -896.20 -4.14 -13.91 16 4 C 0.05 0.76 5.57 86.31 0.48 1.24 16 5 C -0.14 -2.35 9.83 71.99 0.71 -1.64 16 6 C 0.05 0.81 5.06 86.30 0.44 1.24 16 7 C 0.06 0.98 5.99 71.98 0.43 1.41 16 8 O -0.39 -8.70 10.24 -148.98 -1.52 -10.23 16 9 C 0.06 1.12 6.07 71.98 0.44 1.56 16 10 C 0.12 3.39 6.06 86.38 0.52 3.91 16 11 N -0.72 -23.94 5.45 -466.15 -2.54 -26.48 16 12 C 0.57 25.16 7.76 86.73 0.67 25.84 16 13 O -0.61 -30.99 16.32 -3.98 -0.07 -31.06 16 14 C -0.29 -13.77 5.89 -19.93 -0.12 -13.89 16 15 C -0.04 -1.56 9.47 22.25 0.21 -1.35 16 16 C -0.24 -11.38 9.73 22.47 0.22 -11.16 16 17 C 0.10 5.40 5.54 -21.28 -0.12 5.29 16 18 C -0.47 -24.26 9.03 23.46 0.21 -24.04 16 19 H 0.09 4.39 7.91 -2.91 -0.02 4.36 16 20 C 0.03 1.60 5.11 85.35 0.44 2.04 16 21 N -0.81 -41.12 11.12 21.87 0.24 -40.88 16 22 Si 0.99 36.00 29.60 68.60 2.03 38.03 16 23 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 24 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 25 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 26 C -0.20 -10.88 8.62 22.47 0.19 -10.69 16 27 C -0.05 -2.67 9.52 22.25 0.21 -2.46 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.59 6.36 -2.39 -0.02 0.57 16 30 H 0.06 0.60 6.25 -2.39 -0.01 0.59 16 31 H 0.07 1.05 6.61 -2.39 -0.02 1.04 16 32 H 0.07 1.05 6.45 -2.39 -0.02 1.03 16 33 H 0.05 0.65 5.99 -2.39 -0.01 0.64 16 34 H 0.06 1.15 7.82 -2.39 -0.02 1.13 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.84 6.90 -2.39 -0.02 0.82 16 38 H 0.07 0.83 5.99 -2.39 -0.01 0.81 16 39 H 0.07 1.30 7.87 -2.39 -0.02 1.28 16 40 H 0.06 0.77 6.37 -2.39 -0.02 0.75 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.41 11.89 6.47 -92.71 -0.60 11.29 16 47 H 0.13 4.38 6.37 -2.91 -0.02 4.36 16 48 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 49 H 0.29 13.48 8.29 -92.71 -0.77 12.71 16 50 H 0.10 5.64 6.35 -2.91 -0.02 5.62 16 51 H 0.09 4.81 7.63 -2.91 -0.02 4.79 16 Total: -1.00 -67.23 405.69 0.43 -66.80 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: 0.33 Total: 40.56 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 6.09 Total: -22.84 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -6.44 Total: -81.27 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.59 Total: -41.29 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Total: -67.23 0.43 -66.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348153925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.159 kcal (2) G-P(sol) polarization free energy of solvation -67.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds