Wall clock time and date at job start Tue Mar 31 2020 18:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.47451 * 2 1 4 4 C 1.46897 * 110.99736 * 68.70542 * 3 2 1 5 5 C 1.53001 * 109.47375 * 66.04589 * 4 3 2 6 6 H 1.08998 * 109.47249 * 304.99988 * 5 4 3 7 7 C 1.52997 * 109.47312 * 184.99885 * 5 4 3 8 8 O 1.42899 * 109.47214 * 64.99965 * 5 4 3 9 9 C 1.46895 * 111.00089 * 304.75273 * 3 2 1 10 10 H 1.09000 * 109.47455 * 67.94515 * 9 3 2 11 11 C 1.52999 * 109.47313 * 187.95075 * 9 3 2 12 12 C 1.50704 * 109.46841 * 307.95209 * 9 3 2 13 13 O 1.21285 * 120.00083 * 333.77191 * 12 9 3 14 14 N 1.34782 * 119.99849 * 153.77797 * 12 9 3 15 15 C 1.46498 * 119.99749 * 6.17039 * 14 12 9 16 16 C 1.50696 * 109.47402 * 90.00385 * 15 14 12 17 17 H 1.08000 * 119.99837 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00062 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99885 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00198 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46801 * 89.99917 * 20 18 16 22 22 H 1.48500 * 109.47240 * 210.00013 * 20 18 16 23 23 H 1.48497 * 109.46900 * 330.00462 * 20 18 16 24 24 C 1.39923 * 119.99778 * 186.16583 * 14 12 9 25 25 C 1.38870 * 120.07044 * 7.95583 * 24 14 12 26 26 C 1.38116 * 119.92409 * 179.78627 * 25 24 14 27 27 C 1.38280 * 120.07516 * 0.48671 * 26 25 24 28 28 C 1.38281 * 120.13845 * 359.74547 * 27 26 25 29 29 C 1.38113 * 120.07127 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.47130 * 55.11834 * 1 2 3 31 31 H 1.08997 * 109.47809 * 175.12078 * 1 2 3 32 32 H 1.09001 * 109.47453 * 295.12266 * 1 2 3 33 33 H 1.08997 * 109.47008 * 120.00676 * 2 1 3 34 34 H 1.08998 * 109.47035 * 240.00074 * 2 1 3 35 35 H 1.08998 * 109.47415 * 186.04378 * 4 3 2 36 36 H 1.09005 * 109.47041 * 306.04853 * 4 3 2 37 37 H 1.09008 * 109.47071 * 60.00137 * 7 5 4 38 38 H 1.09001 * 109.47144 * 179.97438 * 7 5 4 39 39 H 1.08995 * 109.47484 * 299.99973 * 7 5 4 40 40 H 0.96698 * 113.99919 * 60.00019 * 8 5 4 41 41 H 1.09005 * 109.46835 * 64.85160 * 11 9 3 42 42 H 1.08994 * 109.47054 * 184.85344 * 11 9 3 43 43 H 1.08995 * 109.46720 * 304.85538 * 11 9 3 44 44 H 1.09007 * 109.46502 * 209.99597 * 15 14 12 45 45 H 1.08998 * 109.47479 * 329.99519 * 15 14 12 46 46 H 0.97001 * 119.99914 * 180.02562 * 19 18 16 47 47 H 1.08000 * 120.03490 * 0.02562 * 25 24 14 48 48 H 1.08007 * 119.95936 * 180.23272 * 26 25 24 49 49 H 1.07998 * 119.93086 * 179.72210 * 27 26 25 50 50 H 1.07999 * 119.96501 * 180.02562 * 28 27 26 51 51 H 1.08002 * 120.03405 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7256 2.0473 1.2778 5 6 2.5273 1.3777 2.3957 6 1 2.3181 0.3080 2.4024 7 6 2.1286 1.9838 3.7428 8 8 3.9230 1.5886 2.1731 9 6 1.4582 2.1419 -1.1267 10 1 0.3871 2.2767 -0.9762 11 6 2.1376 3.5102 -1.2111 12 6 1.6938 1.3843 -2.4080 13 8 2.6282 0.6160 -2.4951 14 7 0.8661 1.5605 -3.4570 15 6 -0.1794 2.5851 -3.4010 16 6 0.3633 3.8863 -3.9334 17 1 1.3850 3.9443 -4.2786 18 6 -0.4445 5.0027 -3.9799 19 7 0.0293 6.1383 -4.4441 20 14 -2.2119 4.9022 -3.3836 21 1 -2.2652 5.2295 -1.9361 22 1 -3.0457 5.8699 -4.1410 23 1 -2.7297 3.5273 -3.5996 24 6 1.0056 0.7649 -4.5996 25 6 1.8819 -0.3124 -4.5945 26 6 2.0140 -1.0985 -5.7225 27 6 1.2823 -0.8077 -6.8593 28 6 0.4125 0.2672 -6.8691 29 6 0.2723 1.0543 -5.7428 30 1 -0.3633 0.5877 -0.8430 31 1 -0.3634 -1.0239 -0.0874 32 1 -0.3634 0.4363 0.9304 33 1 1.8932 -0.5139 0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 2.0013 3.0999 1.2134 36 1 0.6605 1.9631 1.4940 37 1 1.0639 1.8229 3.9127 38 1 2.6994 1.5064 4.5392 39 1 2.3378 3.0534 3.7362 40 1 4.1820 2.5201 2.1547 41 1 3.1934 3.3776 -1.4474 42 1 1.6624 4.1043 -1.9915 43 1 2.0410 4.0233 -0.2543 44 1 -1.0290 2.2707 -4.0073 45 1 -0.5004 2.7207 -2.3683 46 1 -0.5389 6.9238 -4.4764 47 1 2.4566 -0.5377 -3.7083 48 1 2.6926 -1.9387 -5.7180 49 1 1.3907 -1.4212 -7.7415 50 1 -0.1579 0.4915 -7.7583 51 1 -0.4069 1.8940 -5.7513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352228747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:20 Heat of formation + Delta-G solvation = -27.556051 kcal Electronic energy + Delta-G solvation = -31076.618289 eV Core-core repulsion = 27170.228640 eV Total energy + Delta-G solvation = -3906.389649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65852 -38.90558 -37.69413 -36.16482 -35.41200 -32.74308 -32.00314 -31.39300 -30.37763 -29.71986 -28.53589 -27.86590 -25.92621 -23.80314 -23.23533 -22.90088 -21.90154 -21.24407 -20.15435 -18.47194 -17.26987 -17.13282 -16.60562 -16.39321 -16.12907 -15.54512 -15.40068 -15.01623 -14.65958 -14.40688 -14.05043 -13.84806 -13.71289 -13.38438 -13.20636 -12.88695 -12.78082 -12.68537 -12.56743 -12.31329 -12.17023 -12.06299 -11.91913 -11.85852 -11.60256 -11.45769 -11.27657 -11.08704 -11.01555 -10.77916 -10.72899 -10.66470 -10.38610 -10.34331 -9.99867 -9.81441 -9.29039 -8.86888 -8.70917 -8.37775 -7.99629 -7.22789 -6.34821 -4.37237 1.81972 1.96509 3.04932 3.13119 3.14289 3.15770 3.36347 4.02673 4.12897 4.44411 4.49667 4.67359 4.86637 4.93281 5.02834 5.05175 5.18819 5.24359 5.34868 5.42764 5.43728 5.46193 5.48488 5.55846 5.60417 5.65876 5.69779 5.85067 5.94470 5.98742 6.00762 6.05961 6.08276 6.12271 6.20120 6.33805 6.36607 6.37797 6.45554 6.61865 6.86946 6.93296 6.95622 7.07028 7.16244 7.20071 7.23407 7.24550 7.72808 7.74632 7.90991 8.23382 8.66238 8.73837 9.21698 10.76830 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.005053 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.649605 B = 5539.978581 C = 7624.021380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.036 3.964 3 N -0.504 5.504 4 C 0.015 3.985 5 C 0.108 3.892 6 H 0.096 0.904 7 C -0.185 4.185 8 O -0.549 6.549 9 C 0.073 3.927 10 H 0.065 0.935 11 C -0.152 4.152 12 C 0.529 3.471 13 O -0.519 6.519 14 N -0.532 5.532 15 C 0.198 3.802 16 C -0.540 4.540 17 H 0.084 0.916 18 C 0.083 3.917 19 N -0.881 5.881 20 Si 0.863 3.137 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.264 1.264 24 C 0.171 3.829 25 C -0.172 4.172 26 C -0.107 4.107 27 C -0.160 4.160 28 C -0.104 4.104 29 C -0.145 4.145 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.371 0.629 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.042 0.958 45 H 0.036 0.964 46 H 0.269 0.731 47 H 0.171 0.829 48 H 0.115 0.885 49 H 0.111 0.889 50 H 0.117 0.883 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 -9.006 9.485 13.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.091 4.091 3 N -0.228 5.228 4 C -0.113 4.113 5 C 0.049 3.951 6 H 0.114 0.886 7 C -0.243 4.243 8 O -0.354 6.354 9 C -0.038 4.038 10 H 0.083 0.917 11 C -0.209 4.209 12 C 0.319 3.681 13 O -0.397 6.397 14 N -0.252 5.252 15 C 0.078 3.922 16 C -0.578 4.578 17 H 0.102 0.898 18 C -0.122 4.122 19 N -0.518 5.518 20 Si 0.689 3.311 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.188 1.188 24 C 0.076 3.924 25 C -0.191 4.191 26 C -0.126 4.126 27 C -0.179 4.179 28 C -0.123 4.123 29 C -0.166 4.166 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.218 0.782 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.187 0.813 48 H 0.133 0.867 49 H 0.129 0.871 50 H 0.135 0.865 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.161 -9.789 9.403 13.574 hybrid contribution -2.184 0.995 0.234 2.411 sum -2.023 -8.794 9.636 13.202 Atomic orbital electron populations 1.22493 0.98831 1.02429 1.01779 1.22416 0.92104 0.90562 1.04046 1.61973 1.58565 1.01535 1.00736 1.22993 0.98444 0.99759 0.90132 1.21889 0.81653 1.00219 0.91388 0.88597 1.22501 1.02094 1.01608 0.98118 1.86612 1.23002 1.30623 1.95147 1.21590 0.98638 0.94924 0.88642 0.91709 1.22036 1.01699 0.93468 1.03699 1.20382 0.81212 0.81677 0.84864 1.90342 1.29721 1.37093 1.82495 1.45686 1.32650 1.33769 1.13048 1.20098 0.86808 0.87269 0.98059 1.21203 1.01087 0.91737 1.43784 0.89832 1.24814 0.97920 0.95099 0.94390 1.69875 1.36681 1.00785 1.44411 0.87045 0.85509 0.78868 0.79638 1.19723 1.20553 1.18845 1.18019 0.96485 0.90945 0.86996 1.22413 1.00554 0.94713 1.01457 1.21006 0.99127 0.99230 0.93258 1.20978 0.99389 0.99203 0.98374 1.20861 0.98682 0.95251 0.97470 1.21081 1.02433 1.01198 0.91865 0.92441 0.92052 0.92763 0.90705 0.88876 0.89735 0.93925 0.91805 0.91735 0.92180 0.78199 0.91983 0.87453 0.92523 0.94042 0.94662 0.92122 0.81285 0.86707 0.87082 0.86463 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.55 9.20 37.15 0.34 -2.21 16 2 C 0.04 0.52 5.39 -3.83 -0.02 0.50 16 3 N -0.50 -7.66 4.30 -228.04 -0.98 -8.64 16 4 C 0.01 0.18 4.32 -3.83 -0.02 0.16 16 5 C 0.11 1.17 3.56 -26.73 -0.10 1.07 16 6 H 0.10 1.08 6.19 -51.93 -0.32 0.76 16 7 C -0.19 -1.54 9.53 37.16 0.35 -1.19 16 8 O -0.55 -6.85 13.29 -35.23 -0.47 -7.32 16 9 C 0.07 1.26 1.10 -68.87 -0.08 1.18 16 10 H 0.07 1.12 4.64 -51.93 -0.24 0.88 16 11 C -0.15 -2.69 9.14 37.16 0.34 -2.35 16 12 C 0.53 10.50 5.45 -10.98 -0.06 10.44 16 13 O -0.52 -10.98 11.31 5.55 0.06 -10.92 16 14 N -0.53 -10.95 2.68 -114.74 -0.31 -11.26 16 15 C 0.20 4.20 3.32 -5.20 -0.02 4.19 16 16 C -0.54 -13.33 7.50 -34.44 -0.26 -13.59 16 17 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 18 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 19 N -0.88 -24.22 13.96 55.43 0.77 -23.45 16 20 Si 0.86 18.65 27.47 -169.99 -4.67 13.98 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 24 C 0.17 3.47 6.48 -83.69 -0.54 2.93 16 25 C -0.17 -3.27 8.97 -39.39 -0.35 -3.63 16 26 C -0.11 -1.77 10.04 -39.61 -0.40 -2.16 16 27 C -0.16 -2.49 10.04 -39.55 -0.40 -2.88 16 28 C -0.10 -1.72 10.04 -39.61 -0.40 -2.12 16 29 C -0.15 -2.80 9.14 -39.39 -0.36 -3.16 16 30 H 0.06 0.85 5.95 -51.93 -0.31 0.54 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.62 6.74 -51.93 -0.35 0.27 16 33 H 0.07 0.96 6.04 -51.93 -0.31 0.65 16 34 H 0.09 1.56 5.87 -51.93 -0.30 1.26 16 35 H 0.08 1.00 5.91 -51.93 -0.31 0.69 16 36 H 0.04 0.49 6.43 -51.93 -0.33 0.16 16 37 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.37 3.49 9.05 45.56 0.41 3.90 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.11 2.23 5.54 -51.93 -0.29 1.94 16 43 H 0.06 0.85 6.09 -51.93 -0.32 0.53 16 44 H 0.04 0.88 5.64 -51.92 -0.29 0.59 16 45 H 0.04 0.71 5.22 -51.93 -0.27 0.44 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 47 H 0.17 3.38 4.74 -55.04 -0.26 3.12 16 48 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 49 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 50 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 51 H 0.14 2.72 6.27 -52.49 -0.33 2.39 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -28.87 384.02 -8.65 -37.52 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -6.80 Total: 15.11 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -2.05 Total: -10.81 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.52 Total: -43.35 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.41 Total: -18.24 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.67 Total: 13.98 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.87 -8.65 -37.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352228747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.967 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds