Wall clock time and date at job start Tue Mar 31 2020 18:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.47451 * 2 1 4 4 C 1.46897 * 110.99736 * 68.70542 * 3 2 1 5 5 C 1.53001 * 109.47375 * 66.04589 * 4 3 2 6 6 H 1.08998 * 109.47249 * 304.99988 * 5 4 3 7 7 C 1.52997 * 109.47312 * 184.99885 * 5 4 3 8 8 O 1.42899 * 109.47214 * 64.99965 * 5 4 3 9 9 C 1.46895 * 111.00089 * 304.75273 * 3 2 1 10 10 H 1.09000 * 109.47455 * 67.94515 * 9 3 2 11 11 C 1.52999 * 109.47313 * 187.95075 * 9 3 2 12 12 C 1.50704 * 109.46841 * 307.95209 * 9 3 2 13 13 O 1.21285 * 120.00083 * 333.77191 * 12 9 3 14 14 N 1.34782 * 119.99849 * 153.77797 * 12 9 3 15 15 C 1.46498 * 119.99749 * 6.17039 * 14 12 9 16 16 C 1.50696 * 109.47402 * 90.00385 * 15 14 12 17 17 H 1.08000 * 119.99837 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00062 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99885 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00198 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46801 * 89.99917 * 20 18 16 22 22 H 1.48500 * 109.47240 * 210.00013 * 20 18 16 23 23 H 1.48497 * 109.46900 * 330.00462 * 20 18 16 24 24 C 1.39923 * 119.99778 * 186.16583 * 14 12 9 25 25 C 1.38870 * 120.07044 * 7.95583 * 24 14 12 26 26 C 1.38116 * 119.92409 * 179.78627 * 25 24 14 27 27 C 1.38280 * 120.07516 * 0.48671 * 26 25 24 28 28 C 1.38281 * 120.13845 * 359.74547 * 27 26 25 29 29 C 1.38113 * 120.07127 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.47130 * 55.11834 * 1 2 3 31 31 H 1.08997 * 109.47809 * 175.12078 * 1 2 3 32 32 H 1.09001 * 109.47453 * 295.12266 * 1 2 3 33 33 H 1.08997 * 109.47008 * 120.00676 * 2 1 3 34 34 H 1.08998 * 109.47035 * 240.00074 * 2 1 3 35 35 H 1.08998 * 109.47415 * 186.04378 * 4 3 2 36 36 H 1.09005 * 109.47041 * 306.04853 * 4 3 2 37 37 H 1.09008 * 109.47071 * 60.00137 * 7 5 4 38 38 H 1.09001 * 109.47144 * 179.97438 * 7 5 4 39 39 H 1.08995 * 109.47484 * 299.99973 * 7 5 4 40 40 H 0.96698 * 113.99919 * 60.00019 * 8 5 4 41 41 H 1.09005 * 109.46835 * 64.85160 * 11 9 3 42 42 H 1.08994 * 109.47054 * 184.85344 * 11 9 3 43 43 H 1.08995 * 109.46720 * 304.85538 * 11 9 3 44 44 H 1.09007 * 109.46502 * 209.99597 * 15 14 12 45 45 H 1.08998 * 109.47479 * 329.99519 * 15 14 12 46 46 H 0.97001 * 119.99914 * 180.02562 * 19 18 16 47 47 H 1.08000 * 120.03490 * 0.02562 * 25 24 14 48 48 H 1.08007 * 119.95936 * 180.23272 * 26 25 24 49 49 H 1.07998 * 119.93086 * 179.72210 * 27 26 25 50 50 H 1.07999 * 119.96501 * 180.02562 * 28 27 26 51 51 H 1.08002 * 120.03405 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7256 2.0473 1.2778 5 6 2.5273 1.3777 2.3957 6 1 2.3181 0.3080 2.4024 7 6 2.1286 1.9838 3.7428 8 8 3.9230 1.5886 2.1731 9 6 1.4582 2.1419 -1.1267 10 1 0.3871 2.2767 -0.9762 11 6 2.1376 3.5102 -1.2111 12 6 1.6938 1.3843 -2.4080 13 8 2.6282 0.6160 -2.4951 14 7 0.8661 1.5605 -3.4570 15 6 -0.1794 2.5851 -3.4010 16 6 0.3633 3.8863 -3.9334 17 1 1.3850 3.9443 -4.2786 18 6 -0.4445 5.0027 -3.9799 19 7 0.0293 6.1383 -4.4441 20 14 -2.2119 4.9022 -3.3836 21 1 -2.2652 5.2295 -1.9361 22 1 -3.0457 5.8699 -4.1410 23 1 -2.7297 3.5273 -3.5996 24 6 1.0056 0.7649 -4.5996 25 6 1.8819 -0.3124 -4.5945 26 6 2.0140 -1.0985 -5.7225 27 6 1.2823 -0.8077 -6.8593 28 6 0.4125 0.2672 -6.8691 29 6 0.2723 1.0543 -5.7428 30 1 -0.3633 0.5877 -0.8430 31 1 -0.3634 -1.0239 -0.0874 32 1 -0.3634 0.4363 0.9304 33 1 1.8932 -0.5139 0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 2.0013 3.0999 1.2134 36 1 0.6605 1.9631 1.4940 37 1 1.0639 1.8229 3.9127 38 1 2.6994 1.5064 4.5392 39 1 2.3378 3.0534 3.7362 40 1 4.1820 2.5201 2.1547 41 1 3.1934 3.3776 -1.4474 42 1 1.6624 4.1043 -1.9915 43 1 2.0410 4.0233 -0.2543 44 1 -1.0290 2.2707 -4.0073 45 1 -0.5004 2.7207 -2.3683 46 1 -0.5389 6.9238 -4.4764 47 1 2.4566 -0.5377 -3.7083 48 1 2.6926 -1.9387 -5.7180 49 1 1.3907 -1.4212 -7.7415 50 1 -0.1579 0.4915 -7.7583 51 1 -0.4069 1.8940 -5.7513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352228747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:19 Heat of formation + Delta-G solvation = -47.194354 kcal Electronic energy + Delta-G solvation = -31077.469869 eV Core-core repulsion = 27170.228640 eV Total energy + Delta-G solvation = -3907.241229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.13020 -40.11733 -38.93359 -37.26570 -37.03690 -34.63462 -33.32202 -32.29433 -31.78725 -31.11045 -29.83796 -29.43892 -27.00290 -25.16059 -24.90875 -24.06987 -23.28055 -22.51910 -21.31659 -19.92703 -19.13236 -18.60877 -18.13220 -17.42255 -17.23144 -16.87075 -16.74331 -16.24090 -16.09011 -15.72462 -15.46903 -15.11060 -14.95933 -14.86699 -14.45952 -14.36131 -14.21209 -13.92286 -13.78591 -13.63597 -13.50867 -13.22576 -13.17814 -12.95557 -12.87589 -12.69872 -12.68395 -12.53551 -12.42172 -12.27890 -12.18789 -11.89783 -11.78264 -11.67047 -11.38543 -10.91722 -10.89405 -10.81057 -10.19598 -9.77439 -9.16902 -8.73752 -8.32170 -6.39220 0.40659 0.56660 1.34834 1.38284 1.46002 1.62603 1.92045 2.29803 2.83319 2.99267 3.03967 3.38399 3.65991 3.79851 3.90833 4.04647 4.12209 4.14142 4.19803 4.21763 4.31745 4.37143 4.38047 4.43907 4.49645 4.55762 4.57568 4.62339 4.64966 4.72179 4.78914 4.83249 4.88851 4.92733 4.93369 5.03053 5.19334 5.22118 5.24864 5.30544 5.32528 5.42273 5.43031 5.59457 5.69353 5.75387 5.95543 6.10445 6.14338 6.29630 6.48777 6.64503 6.98020 7.12366 7.24404 8.83368 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.005053 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.649605 B = 5539.978581 C = 7624.021380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.039 3.961 3 N -0.516 5.516 4 C 0.014 3.986 5 C 0.111 3.889 6 H 0.092 0.908 7 C -0.177 4.177 8 O -0.572 6.572 9 C 0.081 3.919 10 H 0.069 0.931 11 C -0.142 4.142 12 C 0.522 3.478 13 O -0.538 6.538 14 N -0.539 5.539 15 C 0.209 3.791 16 C -0.528 4.528 17 H 0.031 0.969 18 C 0.032 3.968 19 N -0.932 5.932 20 Si 0.927 3.073 21 H -0.256 1.256 22 H -0.283 1.283 23 H -0.245 1.245 24 C 0.140 3.860 25 C -0.189 4.189 26 C -0.105 4.105 27 C -0.149 4.149 28 C -0.102 4.102 29 C -0.167 4.167 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.383 0.617 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.052 0.948 46 H 0.270 0.730 47 H 0.157 0.843 48 H 0.144 0.856 49 H 0.152 0.848 50 H 0.146 0.854 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 -10.613 10.587 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.089 4.089 3 N -0.240 5.240 4 C -0.113 4.113 5 C 0.052 3.948 6 H 0.109 0.891 7 C -0.235 4.235 8 O -0.379 6.379 9 C -0.029 4.029 10 H 0.087 0.913 11 C -0.200 4.200 12 C 0.313 3.687 13 O -0.417 6.417 14 N -0.259 5.259 15 C 0.088 3.912 16 C -0.566 4.566 17 H 0.049 0.951 18 C -0.168 4.168 19 N -0.571 5.571 20 Si 0.750 3.250 21 H -0.180 1.180 22 H -0.209 1.209 23 H -0.168 1.168 24 C 0.045 3.955 25 C -0.209 4.209 26 C -0.123 4.123 27 C -0.168 4.168 28 C -0.120 4.120 29 C -0.188 4.188 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.231 0.769 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.173 0.827 48 H 0.162 0.838 49 H 0.169 0.831 50 H 0.163 0.837 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.439 -11.418 10.514 15.588 hybrid contribution -1.531 1.421 -0.203 2.099 sum -2.970 -9.997 10.310 14.665 Atomic orbital electron populations 1.22416 0.97487 1.03008 1.01854 1.22344 0.93197 0.89961 1.03359 1.61946 1.58901 1.01904 1.01277 1.23127 0.99561 0.99773 0.88889 1.21914 0.80736 1.00056 0.92105 0.89062 1.22415 1.02816 1.01906 0.96343 1.86576 1.24060 1.31929 1.95315 1.21457 0.98760 0.94312 0.88416 0.91325 1.21885 1.00243 0.93807 1.04057 1.20891 0.80785 0.81523 0.85509 1.90333 1.30395 1.37958 1.83002 1.45717 1.32746 1.33722 1.13703 1.19892 0.86977 0.85729 0.98588 1.21121 0.98740 0.93632 1.43117 0.95090 1.25601 1.02482 0.94338 0.94414 1.70028 1.38629 1.01814 1.46607 0.86016 0.79603 0.79679 0.79734 1.18025 1.20887 1.16794 1.18349 0.97856 0.91863 0.87424 1.22397 1.00792 0.95360 1.02315 1.21378 0.99179 0.99267 0.92515 1.21412 0.97603 0.98612 0.99189 1.21238 0.98702 0.94782 0.97303 1.21129 1.02953 1.01783 0.92915 0.94497 0.90907 0.90729 0.89045 0.91866 0.89441 0.92567 0.90631 0.91425 0.91380 0.76893 0.93560 0.90817 0.89504 0.93550 0.92997 0.92079 0.82671 0.83807 0.83071 0.83652 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.61 9.20 71.98 0.66 -3.95 16 2 C 0.04 1.10 5.39 86.30 0.47 1.56 16 3 N -0.52 -15.41 4.30 -875.40 -3.77 -19.18 16 4 C 0.01 0.31 4.32 86.30 0.37 0.68 16 5 C 0.11 2.18 3.56 30.59 0.11 2.29 16 6 H 0.09 1.87 6.19 -2.39 -0.01 1.85 16 7 C -0.18 -2.45 9.53 71.98 0.69 -1.77 16 8 O -0.57 -13.60 13.29 -148.98 -1.98 -15.58 16 9 C 0.08 2.85 1.10 44.17 0.05 2.90 16 10 H 0.07 2.33 4.64 -2.39 -0.01 2.32 16 11 C -0.14 -5.19 9.14 71.98 0.66 -4.53 16 12 C 0.52 21.54 5.45 87.66 0.48 22.02 16 13 O -0.54 -23.86 11.31 -3.04 -0.03 -23.90 16 14 N -0.54 -23.06 2.68 -635.30 -1.70 -24.77 16 15 C 0.21 9.05 3.32 85.63 0.28 9.33 16 16 C -0.53 -27.26 7.50 25.60 0.19 -27.06 16 17 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 18 C 0.03 1.66 5.47 84.65 0.46 2.12 16 19 N -0.93 -53.25 13.96 21.45 0.30 -52.95 16 20 Si 0.93 38.15 27.47 68.60 1.88 40.03 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.24 -9.23 6.54 99.48 0.65 -8.58 16 24 C 0.14 5.85 6.48 38.15 0.25 6.10 16 25 C -0.19 -7.32 8.97 22.39 0.20 -7.12 16 26 C -0.10 -3.28 10.04 22.25 0.22 -3.05 16 27 C -0.15 -4.21 10.04 22.29 0.22 -3.98 16 28 C -0.10 -3.21 10.04 22.25 0.22 -2.98 16 29 C -0.17 -6.54 9.14 22.39 0.20 -6.33 16 30 H 0.04 1.05 5.95 -2.39 -0.01 1.04 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.50 6.74 -2.39 -0.02 1.48 16 33 H 0.09 2.24 6.04 -2.39 -0.01 2.23 16 34 H 0.06 2.17 5.87 -2.39 -0.01 2.16 16 35 H 0.09 1.89 5.91 -2.39 -0.01 1.87 16 36 H 0.06 1.13 6.43 -2.38 -0.02 1.11 16 37 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.38 6.76 9.05 -74.06 -0.67 6.10 16 41 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.07 3.22 5.54 -2.39 -0.01 3.20 16 43 H 0.09 2.56 6.09 -2.39 -0.01 2.55 16 44 H 0.05 1.97 5.64 -2.38 -0.01 1.96 16 45 H 0.05 2.08 5.22 -2.39 -0.01 2.07 16 46 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 47 H 0.16 6.46 4.74 -43.40 -0.21 6.26 16 48 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 49 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 50 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 51 H 0.12 4.94 6.27 -2.91 -0.02 4.92 16 Total: -1.00 -66.57 384.02 0.48 -66.08 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: 0.04 Total: 44.03 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 5.74 Total: -13.77 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -5.17 Total: -96.90 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -2.01 Total: -39.47 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.88 Total: 40.03 kcal Total: -66.57 0.48 -66.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352228747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.889 kcal (2) G-P(sol) polarization free energy of solvation -66.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds