Wall clock time and date at job start Tue Mar 31 2020 18:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46893 * 109.47543 * 2 1 4 4 C 1.46906 * 110.99673 * 301.60670 * 3 2 1 5 5 C 1.52999 * 109.47097 * 286.49666 * 4 3 2 6 6 H 1.08999 * 109.47581 * 306.56567 * 5 4 3 7 7 C 1.52995 * 109.47401 * 186.56298 * 5 4 3 8 8 O 1.42901 * 109.47153 * 66.56421 * 5 4 3 9 9 C 1.46900 * 111.00241 * 65.55636 * 3 2 1 10 10 H 1.09005 * 109.47163 * 300.60310 * 9 3 2 11 11 C 1.53005 * 109.47328 * 180.60163 * 9 3 2 12 12 C 1.50700 * 109.46895 * 60.59769 * 9 3 2 13 13 O 1.21284 * 119.99906 * 28.23825 * 12 9 3 14 14 N 1.34770 * 120.00016 * 208.50804 * 12 9 3 15 15 C 1.46508 * 120.00146 * 5.47621 * 14 12 9 16 16 C 1.50697 * 109.47174 * 89.99629 * 15 14 12 17 17 H 1.07993 * 120.00106 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99837 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00308 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00102 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46880 * 59.99891 * 20 18 16 22 22 H 1.48491 * 109.47227 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47096 * 300.00340 * 20 18 16 24 24 C 1.39921 * 120.00365 * 185.47346 * 14 12 9 25 25 C 1.38875 * 120.06955 * 6.95631 * 24 14 12 26 26 C 1.38109 * 119.93261 * 179.74244 * 25 24 14 27 27 C 1.38287 * 120.06933 * 0.53683 * 26 25 24 28 28 C 1.38286 * 120.13741 * 359.72198 * 27 26 25 29 29 C 1.38108 * 120.07320 * 0.02562 * 28 27 26 30 30 H 1.09008 * 109.47289 * 305.50846 * 1 2 3 31 31 H 1.08995 * 109.47267 * 65.50913 * 1 2 3 32 32 H 1.09006 * 109.47466 * 185.51335 * 1 2 3 33 33 H 1.08997 * 109.47356 * 239.99453 * 2 1 3 34 34 H 1.09006 * 109.46978 * 119.99944 * 2 1 3 35 35 H 1.08995 * 109.47187 * 46.49917 * 4 3 2 36 36 H 1.08996 * 109.47484 * 166.49836 * 4 3 2 37 37 H 1.09003 * 109.47260 * 59.99794 * 7 5 4 38 38 H 1.09000 * 109.47606 * 180.02562 * 7 5 4 39 39 H 1.09001 * 109.47418 * 300.00366 * 7 5 4 40 40 H 0.96703 * 113.99675 * 65.82499 * 8 5 4 41 41 H 1.09001 * 109.46820 * 303.70386 * 11 9 3 42 42 H 1.08994 * 109.47216 * 63.69950 * 11 9 3 43 43 H 1.08995 * 109.46833 * 183.70537 * 11 9 3 44 44 H 1.09004 * 109.46774 * 210.00037 * 15 14 12 45 45 H 1.09003 * 109.46925 * 329.99817 * 15 14 12 46 46 H 0.96997 * 120.00334 * 179.97438 * 19 18 16 47 47 H 1.08004 * 120.03354 * 359.97438 * 25 24 14 48 48 H 1.08003 * 119.96865 * 180.25665 * 26 25 24 49 49 H 1.07999 * 119.93191 * 179.69614 * 27 26 25 50 50 H 1.08000 * 119.96194 * 179.97438 * 28 27 26 51 51 H 1.07998 * 120.03414 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5175 2.1208 -1.1681 5 6 2.2537 1.6487 -2.4234 6 1 3.3293 1.7249 -2.2642 7 6 1.8506 2.5249 -3.6110 8 8 1.9077 0.2891 -2.6956 9 6 1.6602 2.0705 1.2485 10 1 0.5761 2.0739 1.3620 11 6 2.1730 3.5114 1.2051 12 6 2.2850 1.3497 2.4152 13 8 3.3170 0.7308 2.2634 14 7 1.6943 1.3884 3.6259 15 6 0.3856 2.0283 3.7824 16 6 -0.7018 1.0081 3.5639 17 1 -0.4440 -0.0145 3.3313 18 6 -2.0258 1.3805 3.6599 19 7 -2.3398 2.6259 3.9426 20 14 -3.3738 0.1161 3.3883 21 1 -3.2353 -0.9766 4.3843 22 1 -4.7001 0.7650 3.5458 23 1 -3.2574 -0.4451 2.0185 24 6 2.3306 0.8174 4.7335 25 6 3.6297 0.3397 4.6199 26 6 4.2570 -0.2185 5.7164 27 6 3.5890 -0.3123 6.9236 28 6 2.2935 0.1575 7.0385 29 6 1.6625 0.7216 5.9471 30 1 -0.3634 0.5969 0.8366 31 1 -0.3633 0.4260 -0.9351 32 1 -0.3634 -1.0229 0.0987 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 0.4494 1.9361 -1.2822 36 1 1.6886 3.1879 -1.0264 37 1 2.1144 3.5620 -3.4035 38 1 2.3747 2.1883 -4.5055 39 1 0.7750 2.4487 -3.7703 40 1 0.9798 0.1598 -2.9352 41 1 3.2482 3.5090 1.0258 42 1 1.6719 4.0513 0.4017 43 1 1.9644 4.0000 2.1567 44 1 0.3006 2.4403 4.7879 45 1 0.2836 2.8303 3.0512 46 1 -3.2713 2.8880 4.0098 47 1 4.1502 0.4082 3.6761 48 1 5.2687 -0.5864 5.6298 49 1 4.0799 -0.7537 7.7783 50 1 1.7743 0.0825 7.9825 51 1 0.6505 1.0879 6.0375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352228749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:26 Heat of formation + Delta-G solvation = -33.881652 kcal Electronic energy + Delta-G solvation = -31160.698662 eV Core-core repulsion = 27254.034715 eV Total energy + Delta-G solvation = -3906.663947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.46293 -38.88019 -37.66219 -35.98661 -35.23668 -32.74901 -31.88623 -31.55440 -30.27888 -29.44668 -28.23759 -27.29852 -26.06647 -23.78157 -23.28803 -22.55773 -21.92914 -21.21757 -20.11568 -18.34769 -17.04997 -16.86091 -16.46064 -16.21765 -16.13913 -15.72575 -15.21808 -14.83104 -14.55078 -14.21153 -14.13035 -13.80206 -13.58213 -13.27257 -13.05945 -12.75666 -12.61740 -12.54377 -12.40384 -12.16695 -12.14730 -11.97750 -11.76348 -11.62143 -11.44197 -11.30164 -11.09313 -11.05158 -11.01985 -10.89085 -10.69551 -10.52231 -10.36937 -10.26055 -10.08852 -9.61050 -9.20569 -8.74098 -8.56775 -8.31133 -7.82506 -7.15873 -6.31665 -4.40356 1.90112 2.03647 3.15390 3.19223 3.20980 3.27955 3.56134 4.16357 4.25462 4.40263 4.52551 4.93881 4.97510 5.01965 5.11965 5.14265 5.37023 5.42743 5.48494 5.54756 5.57074 5.62112 5.67888 5.71234 5.74473 5.81141 5.86168 5.93420 6.01100 6.09704 6.11985 6.17665 6.20441 6.21859 6.36547 6.38157 6.54370 6.56375 6.76095 6.87245 6.90263 7.02299 7.07773 7.16102 7.30194 7.36358 7.41373 7.61463 7.66595 7.84464 7.86740 8.13357 8.65103 8.84392 9.27674 10.74098 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.005118 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.431910 B = 5469.509844 C = 7472.124105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.040 3.960 3 N -0.507 5.507 4 C 0.011 3.989 5 C 0.110 3.890 6 H 0.105 0.895 7 C -0.184 4.184 8 O -0.556 6.556 9 C 0.057 3.943 10 H 0.090 0.910 11 C -0.141 4.141 12 C 0.528 3.472 13 O -0.523 6.523 14 N -0.538 5.538 15 C 0.227 3.773 16 C -0.538 4.538 17 H 0.062 0.938 18 C 0.070 3.930 19 N -0.888 5.888 20 Si 0.893 3.107 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.173 3.827 25 C -0.176 4.176 26 C -0.108 4.108 27 C -0.163 4.163 28 C -0.105 4.105 29 C -0.147 4.147 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.368 0.632 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.046 0.954 46 H 0.268 0.732 47 H 0.173 0.827 48 H 0.113 0.887 49 H 0.110 0.890 50 H 0.116 0.884 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.057 1.095 -7.221 9.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.087 4.087 3 N -0.230 5.230 4 C -0.117 4.117 5 C 0.050 3.950 6 H 0.123 0.877 7 C -0.242 4.242 8 O -0.361 6.361 9 C -0.054 4.054 10 H 0.108 0.892 11 C -0.199 4.199 12 C 0.317 3.683 13 O -0.401 6.401 14 N -0.257 5.257 15 C 0.108 3.892 16 C -0.576 4.576 17 H 0.080 0.920 18 C -0.133 4.133 19 N -0.525 5.525 20 Si 0.720 3.280 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C 0.076 3.924 25 C -0.196 4.196 26 C -0.127 4.127 27 C -0.183 4.183 28 C -0.124 4.124 29 C -0.167 4.167 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.215 0.785 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.189 0.811 48 H 0.132 0.868 49 H 0.128 0.872 50 H 0.134 0.866 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.519 0.866 -7.237 10.472 hybrid contribution -2.684 -0.449 0.091 2.723 sum 4.835 0.417 -7.146 8.637 Atomic orbital electron populations 1.22507 0.98328 1.02635 1.02109 1.22460 0.92621 0.89448 1.04218 1.62036 1.58911 1.02258 0.99835 1.23020 0.97904 0.99305 0.91464 1.21929 1.00561 0.81054 0.91419 0.87742 1.22489 1.01825 1.00853 0.99048 1.86611 1.31893 1.26715 1.90895 1.21696 1.00766 0.94111 0.88828 0.89206 1.21824 1.02065 0.93449 1.02541 1.20420 0.84092 0.80227 0.83529 1.90315 1.24307 1.42339 1.83176 1.46043 1.20983 1.52836 1.05883 1.19713 0.76537 0.93631 0.99301 1.21327 0.90315 0.96083 1.49896 0.91951 1.24883 0.98529 0.95396 0.94532 1.69900 1.18999 1.16337 1.47313 0.86612 0.80673 0.81496 0.79184 1.19915 1.21046 1.19925 1.18067 0.91752 0.95176 0.87360 1.22525 0.94332 1.00742 1.02010 1.21001 0.99265 0.99609 0.92834 1.20961 0.95708 1.03940 0.97647 1.20853 0.94885 0.98709 0.97941 1.21113 1.00992 1.02737 0.91858 0.90482 0.93509 0.92648 0.88156 0.91011 0.93612 0.89673 0.91505 0.91814 0.92469 0.78513 0.91457 0.91562 0.91524 0.93695 0.93601 0.92276 0.81088 0.86849 0.87229 0.86604 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.26 9.21 37.15 0.34 -2.92 16 2 C 0.04 0.67 5.37 -3.83 -0.02 0.65 16 3 N -0.51 -8.16 4.24 -228.04 -0.97 -9.12 16 4 C 0.01 0.14 4.47 -3.82 -0.02 0.13 16 5 C 0.11 1.22 3.79 -26.73 -0.10 1.12 16 6 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 7 C -0.18 -1.56 9.48 37.16 0.35 -1.21 16 8 O -0.56 -6.62 10.40 -35.23 -0.37 -6.99 16 9 C 0.06 1.01 1.39 -68.86 -0.10 0.91 16 10 H 0.09 1.77 4.44 -51.93 -0.23 1.54 16 11 C -0.14 -2.12 8.57 37.16 0.32 -1.80 16 12 C 0.53 10.79 5.65 -10.99 -0.06 10.72 16 13 O -0.52 -11.39 12.18 5.55 0.07 -11.32 16 14 N -0.54 -11.47 2.68 -114.73 -0.31 -11.78 16 15 C 0.23 5.17 4.12 -5.19 -0.02 5.15 16 16 C -0.54 -13.27 8.48 -34.44 -0.29 -13.56 16 17 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 18 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -23.13 13.29 55.43 0.74 -22.39 16 20 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 C 0.17 3.62 6.49 -83.69 -0.54 3.07 16 25 C -0.18 -3.48 8.98 -39.39 -0.35 -3.84 16 26 C -0.11 -1.84 10.04 -39.61 -0.40 -2.24 16 27 C -0.16 -2.62 10.04 -39.55 -0.40 -3.02 16 28 C -0.11 -1.80 10.04 -39.61 -0.40 -2.20 16 29 C -0.15 -2.92 9.15 -39.39 -0.36 -3.28 16 30 H 0.08 1.51 5.75 -51.92 -0.30 1.21 16 31 H 0.05 0.66 6.41 -51.93 -0.33 0.33 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.61 5.48 -51.93 -0.28 1.33 16 34 H 0.07 1.43 6.33 -51.93 -0.33 1.10 16 35 H 0.05 0.59 5.75 -51.93 -0.30 0.29 16 36 H 0.09 1.00 5.46 -51.93 -0.28 0.72 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.37 3.32 9.02 45.56 0.41 3.73 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.84 6.20 -51.93 -0.32 0.52 16 43 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 44 H 0.05 1.08 6.54 -51.93 -0.34 0.74 16 45 H 0.05 1.05 5.70 -51.93 -0.30 0.76 16 46 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 47 H 0.17 3.57 4.69 -55.35 -0.26 3.31 16 48 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 49 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 50 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 51 H 0.14 2.89 6.27 -52.49 -0.33 2.56 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -27.79 389.23 -9.08 -36.87 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -6.94 Total: 14.60 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.14 Total: -10.64 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -0.54 Total: -43.30 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.30 Total: -18.31 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -27.79 -9.08 -36.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352228749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.986 kcal (2) G-P(sol) polarization free energy of solvation -27.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds