Wall clock time and date at job start Tue Mar 31 2020 18:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46893 * 109.47543 * 2 1 4 4 C 1.46906 * 110.99673 * 301.60670 * 3 2 1 5 5 C 1.52999 * 109.47097 * 286.49666 * 4 3 2 6 6 H 1.08999 * 109.47581 * 306.56567 * 5 4 3 7 7 C 1.52995 * 109.47401 * 186.56298 * 5 4 3 8 8 O 1.42901 * 109.47153 * 66.56421 * 5 4 3 9 9 C 1.46900 * 111.00241 * 65.55636 * 3 2 1 10 10 H 1.09005 * 109.47163 * 300.60310 * 9 3 2 11 11 C 1.53005 * 109.47328 * 180.60163 * 9 3 2 12 12 C 1.50700 * 109.46895 * 60.59769 * 9 3 2 13 13 O 1.21284 * 119.99906 * 28.23825 * 12 9 3 14 14 N 1.34770 * 120.00016 * 208.50804 * 12 9 3 15 15 C 1.46508 * 120.00146 * 5.47621 * 14 12 9 16 16 C 1.50697 * 109.47174 * 89.99629 * 15 14 12 17 17 H 1.07993 * 120.00106 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99837 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00308 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00102 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46880 * 59.99891 * 20 18 16 22 22 H 1.48491 * 109.47227 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47096 * 300.00340 * 20 18 16 24 24 C 1.39921 * 120.00365 * 185.47346 * 14 12 9 25 25 C 1.38875 * 120.06955 * 6.95631 * 24 14 12 26 26 C 1.38109 * 119.93261 * 179.74244 * 25 24 14 27 27 C 1.38287 * 120.06933 * 0.53683 * 26 25 24 28 28 C 1.38286 * 120.13741 * 359.72198 * 27 26 25 29 29 C 1.38108 * 120.07320 * 0.02562 * 28 27 26 30 30 H 1.09008 * 109.47289 * 305.50846 * 1 2 3 31 31 H 1.08995 * 109.47267 * 65.50913 * 1 2 3 32 32 H 1.09006 * 109.47466 * 185.51335 * 1 2 3 33 33 H 1.08997 * 109.47356 * 239.99453 * 2 1 3 34 34 H 1.09006 * 109.46978 * 119.99944 * 2 1 3 35 35 H 1.08995 * 109.47187 * 46.49917 * 4 3 2 36 36 H 1.08996 * 109.47484 * 166.49836 * 4 3 2 37 37 H 1.09003 * 109.47260 * 59.99794 * 7 5 4 38 38 H 1.09000 * 109.47606 * 180.02562 * 7 5 4 39 39 H 1.09001 * 109.47418 * 300.00366 * 7 5 4 40 40 H 0.96703 * 113.99675 * 65.82499 * 8 5 4 41 41 H 1.09001 * 109.46820 * 303.70386 * 11 9 3 42 42 H 1.08994 * 109.47216 * 63.69950 * 11 9 3 43 43 H 1.08995 * 109.46833 * 183.70537 * 11 9 3 44 44 H 1.09004 * 109.46774 * 210.00037 * 15 14 12 45 45 H 1.09003 * 109.46925 * 329.99817 * 15 14 12 46 46 H 0.96997 * 120.00334 * 179.97438 * 19 18 16 47 47 H 1.08004 * 120.03354 * 359.97438 * 25 24 14 48 48 H 1.08003 * 119.96865 * 180.25665 * 26 25 24 49 49 H 1.07999 * 119.93191 * 179.69614 * 27 26 25 50 50 H 1.08000 * 119.96194 * 179.97438 * 28 27 26 51 51 H 1.07998 * 120.03414 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5175 2.1208 -1.1681 5 6 2.2537 1.6487 -2.4234 6 1 3.3293 1.7249 -2.2642 7 6 1.8506 2.5249 -3.6110 8 8 1.9077 0.2891 -2.6956 9 6 1.6602 2.0705 1.2485 10 1 0.5761 2.0739 1.3620 11 6 2.1730 3.5114 1.2051 12 6 2.2850 1.3497 2.4152 13 8 3.3170 0.7308 2.2634 14 7 1.6943 1.3884 3.6259 15 6 0.3856 2.0283 3.7824 16 6 -0.7018 1.0081 3.5639 17 1 -0.4440 -0.0145 3.3313 18 6 -2.0258 1.3805 3.6599 19 7 -2.3398 2.6259 3.9426 20 14 -3.3738 0.1161 3.3883 21 1 -3.2353 -0.9766 4.3843 22 1 -4.7001 0.7650 3.5458 23 1 -3.2574 -0.4451 2.0185 24 6 2.3306 0.8174 4.7335 25 6 3.6297 0.3397 4.6199 26 6 4.2570 -0.2185 5.7164 27 6 3.5890 -0.3123 6.9236 28 6 2.2935 0.1575 7.0385 29 6 1.6625 0.7216 5.9471 30 1 -0.3634 0.5969 0.8366 31 1 -0.3633 0.4260 -0.9351 32 1 -0.3634 -1.0229 0.0987 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 0.4494 1.9361 -1.2822 36 1 1.6886 3.1879 -1.0264 37 1 2.1144 3.5620 -3.4035 38 1 2.3747 2.1883 -4.5055 39 1 0.7750 2.4487 -3.7703 40 1 0.9798 0.1598 -2.9352 41 1 3.2482 3.5090 1.0258 42 1 1.6719 4.0513 0.4017 43 1 1.9644 4.0000 2.1567 44 1 0.3006 2.4403 4.7879 45 1 0.2836 2.8303 3.0512 46 1 -3.2713 2.8880 4.0098 47 1 4.1502 0.4082 3.6761 48 1 5.2687 -0.5864 5.6298 49 1 4.0799 -0.7537 7.7783 50 1 1.7743 0.0825 7.9825 51 1 0.6505 1.0879 6.0375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352228749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:25 Heat of formation + Delta-G solvation = -51.008909 kcal Electronic energy + Delta-G solvation = -31161.441355 eV Core-core repulsion = 27254.034715 eV Total energy + Delta-G solvation = -3907.406641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.99994 -40.13335 -38.97992 -37.15381 -36.92933 -34.65195 -33.23404 -32.50869 -31.73494 -30.90054 -29.48236 -29.07929 -27.20187 -25.38572 -24.87919 -23.82441 -23.28865 -22.51947 -21.40596 -19.84249 -18.79358 -18.52456 -18.00086 -17.39111 -17.19281 -17.09028 -16.68435 -16.31024 -16.09313 -15.58438 -15.46979 -15.07168 -14.86866 -14.71464 -14.47028 -14.33034 -14.10652 -13.85812 -13.70568 -13.41334 -13.38153 -13.33162 -13.13197 -13.04325 -12.76765 -12.71951 -12.63738 -12.52264 -12.35153 -12.21113 -12.13434 -12.00153 -11.91600 -11.77654 -11.45680 -10.90354 -10.71403 -10.65557 -10.12549 -9.76371 -9.13741 -8.75664 -8.25221 -6.41125 0.43465 0.58101 1.35110 1.37361 1.43779 1.67847 2.03676 2.34567 2.93037 3.02818 3.05801 3.45684 3.59773 3.97556 4.04649 4.07909 4.15246 4.19746 4.25155 4.34112 4.37857 4.41112 4.42701 4.49653 4.57348 4.60143 4.65922 4.67540 4.69332 4.71315 4.91306 4.92947 4.95405 5.02360 5.06130 5.13522 5.16718 5.24334 5.26745 5.33918 5.45514 5.50309 5.60721 5.63253 5.71589 5.81626 5.92983 6.01182 6.17617 6.33310 6.45303 6.71127 6.90975 7.20147 7.30792 8.77967 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.005118 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.431910 B = 5469.509844 C = 7472.124105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 N -0.511 5.511 4 C 0.010 3.990 5 C 0.115 3.885 6 H 0.092 0.908 7 C -0.175 4.175 8 O -0.572 6.572 9 C 0.063 3.937 10 H 0.068 0.932 11 C -0.135 4.135 12 C 0.521 3.479 13 O -0.541 6.541 14 N -0.544 5.544 15 C 0.246 3.754 16 C -0.536 4.536 17 H 0.043 0.957 18 C 0.035 3.965 19 N -0.912 5.912 20 Si 0.943 3.057 21 H -0.277 1.277 22 H -0.277 1.277 23 H -0.269 1.269 24 C 0.141 3.859 25 C -0.193 4.193 26 C -0.104 4.104 27 C -0.151 4.151 28 C -0.102 4.102 29 C -0.168 4.168 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.033 0.967 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.381 0.619 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.027 0.973 45 H 0.042 0.958 46 H 0.270 0.730 47 H 0.158 0.842 48 H 0.144 0.856 49 H 0.152 0.848 50 H 0.145 0.855 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.459 0.798 -7.726 10.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.077 4.077 3 N -0.235 5.235 4 C -0.117 4.117 5 C 0.056 3.944 6 H 0.110 0.890 7 C -0.233 4.233 8 O -0.379 6.379 9 C -0.048 4.048 10 H 0.086 0.914 11 C -0.193 4.193 12 C 0.312 3.688 13 O -0.421 6.421 14 N -0.264 5.264 15 C 0.126 3.874 16 C -0.575 4.575 17 H 0.061 0.939 18 C -0.166 4.166 19 N -0.550 5.550 20 Si 0.769 3.231 21 H -0.203 1.203 22 H -0.202 1.202 23 H -0.194 1.194 24 C 0.046 3.954 25 C -0.213 4.213 26 C -0.123 4.123 27 C -0.170 4.170 28 C -0.120 4.120 29 C -0.188 4.188 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.230 0.770 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.076 0.924 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.175 0.825 48 H 0.162 0.838 49 H 0.170 0.830 50 H 0.162 0.838 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.922 0.569 -7.746 11.094 hybrid contribution -2.726 -0.413 0.313 2.775 sum 5.196 0.157 -7.433 9.070 Atomic orbital electron populations 1.22397 0.98005 1.02091 1.02096 1.22309 0.92693 0.89968 1.02763 1.62084 1.59181 1.02063 1.00204 1.23195 0.98182 0.99703 0.90640 1.21865 0.99612 0.81321 0.91643 0.89030 1.22395 1.02483 1.00694 0.97697 1.86567 1.33187 1.27259 1.90896 1.21629 0.99105 0.95391 0.88692 0.91447 1.21816 1.02486 0.91790 1.03179 1.20949 0.83949 0.80014 0.83871 1.90300 1.25123 1.43184 1.83474 1.46025 1.20538 1.53152 1.06701 1.19339 0.77079 0.93095 0.97887 1.21309 0.91156 0.95410 1.49596 0.93878 1.25440 1.00071 0.96795 0.94316 1.69969 1.19449 1.17504 1.48083 0.85826 0.78739 0.79504 0.79056 1.20298 1.20214 1.19396 1.18397 0.92703 0.96660 0.87676 1.22491 0.94033 1.02077 1.02715 1.21381 1.00512 0.98149 0.92239 1.21401 0.94937 1.02179 0.98439 1.21220 0.95564 0.97241 0.97993 1.21101 1.00436 1.04433 0.92855 0.93799 0.90686 0.92775 0.86966 0.94875 0.93351 0.88357 0.90483 0.91310 0.91490 0.77023 0.91069 0.88775 0.92408 0.95499 0.93973 0.92074 0.82524 0.83776 0.83036 0.83771 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.25 9.21 71.98 0.66 -5.59 16 2 C 0.05 1.74 5.37 86.30 0.46 2.20 16 3 N -0.51 -16.57 4.24 -875.39 -3.71 -20.28 16 4 C 0.01 0.25 4.47 86.30 0.39 0.63 16 5 C 0.11 2.36 3.79 30.59 0.12 2.48 16 6 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 7 C -0.17 -2.49 9.48 71.98 0.68 -1.81 16 8 O -0.57 -12.69 10.40 -148.98 -1.55 -14.24 16 9 C 0.06 2.30 1.39 44.17 0.06 2.37 16 10 H 0.07 2.78 4.44 -2.38 -0.01 2.77 16 11 C -0.14 -4.07 8.57 71.98 0.62 -3.45 16 12 C 0.52 22.42 5.65 87.66 0.50 22.91 16 13 O -0.54 -24.72 12.18 -3.04 -0.04 -24.75 16 14 N -0.54 -24.59 2.68 -635.29 -1.70 -26.30 16 15 C 0.25 11.83 4.12 85.63 0.35 12.19 16 16 C -0.54 -27.65 8.48 25.60 0.22 -27.43 16 17 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 18 C 0.04 1.81 5.46 84.65 0.46 2.27 16 19 N -0.91 -48.39 13.29 21.45 0.28 -48.11 16 20 Si 0.94 41.29 29.54 68.60 2.03 43.31 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.14 6.16 6.49 38.15 0.25 6.41 16 25 C -0.19 -7.78 8.98 22.39 0.20 -7.58 16 26 C -0.10 -3.37 10.04 22.25 0.22 -3.14 16 27 C -0.15 -4.40 10.04 22.29 0.22 -4.17 16 28 C -0.10 -3.34 10.04 22.25 0.22 -3.12 16 29 C -0.17 -6.88 9.15 22.39 0.20 -6.68 16 30 H 0.04 1.77 5.75 -2.38 -0.01 1.76 16 31 H 0.07 2.03 6.41 -2.39 -0.02 2.01 16 32 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.11 3.59 5.48 -2.39 -0.01 3.58 16 34 H 0.03 1.39 6.33 -2.38 -0.02 1.37 16 35 H 0.05 1.16 5.75 -2.39 -0.01 1.14 16 36 H 0.10 2.10 5.46 -2.39 -0.01 2.09 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.38 6.06 9.02 -74.05 -0.67 5.39 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.09 2.26 6.20 -2.39 -0.01 2.25 16 43 H 0.06 1.83 7.67 -2.39 -0.02 1.81 16 44 H 0.03 1.38 6.54 -2.38 -0.02 1.37 16 45 H 0.04 2.04 5.70 -2.39 -0.01 2.03 16 46 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 47 H 0.16 6.78 4.69 -48.30 -0.23 6.56 16 48 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 49 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 50 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 51 H 0.12 5.15 6.27 -2.91 -0.02 5.13 16 Total: -1.00 -62.67 389.23 1.22 -61.45 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: 0.07 Total: 40.43 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 5.84 Total: -11.52 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -5.13 Total: -94.69 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.59 Total: -38.99 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -62.67 1.22 -61.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352228749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.439 kcal (2) G-P(sol) polarization free energy of solvation -62.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds