Wall clock time and date at job start Tue Mar 31 2020 19:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47061 * 2 1 4 4 C 1.36930 * 120.00373 * 264.03311 * 3 2 1 5 5 H 1.07997 * 120.00936 * 188.07021 * 4 3 2 6 6 C 1.38817 * 119.99553 * 8.07516 * 4 3 2 7 7 N 1.31620 * 120.00048 * 25.13123 * 6 4 3 8 8 Si 1.86804 * 119.99977 * 205.12647 * 6 4 3 9 9 H 1.48502 * 109.47107 * 84.99156 * 8 6 4 10 10 H 1.48496 * 109.47145 * 204.98948 * 8 6 4 11 11 H 1.48496 * 109.47082 * 324.99073 * 8 6 4 12 12 C 1.46508 * 119.99997 * 84.03500 * 3 2 1 13 13 C 1.50700 * 109.46853 * 269.99848 * 12 3 2 14 14 O 1.21279 * 120.00307 * 0.02562 * 13 12 3 15 15 N 1.34779 * 119.99434 * 180.02562 * 13 12 3 16 16 C 1.46498 * 119.99567 * 180.27849 * 15 13 12 17 17 C 1.50706 * 109.47366 * 179.72497 * 16 15 13 18 18 C 1.38260 * 119.99794 * 269.72692 * 17 16 15 19 19 C 1.38217 * 119.99831 * 179.80394 * 18 17 16 20 20 C 1.38251 * 119.99847 * 0.39845 * 19 18 17 21 21 C 1.38215 * 120.00006 * 359.85464 * 20 19 18 22 22 C 1.50702 * 119.99761 * 179.97438 * 21 20 19 23 23 O 1.42893 * 109.47551 * 269.97912 * 22 21 20 24 24 C 1.42906 * 114.00466 * 180.02562 * 23 22 21 25 25 C 1.52997 * 109.47217 * 149.99810 * 24 23 22 26 26 C 1.52995 * 109.46972 * 270.00552 * 24 23 22 27 27 C 1.38205 * 120.00164 * 89.99487 * 17 16 15 28 28 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47139 * 299.99980 * 1 2 3 30 30 H 1.09000 * 109.47103 * 60.00151 * 1 2 3 31 31 H 1.08996 * 109.47181 * 240.00078 * 2 1 3 32 32 H 1.09000 * 109.47103 * 119.99849 * 2 1 3 33 33 H 0.97003 * 119.99713 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46798 * 149.99965 * 12 3 2 35 35 H 1.08995 * 109.47002 * 29.99886 * 12 3 2 36 36 H 0.96996 * 120.00466 * 0.02562 * 15 13 12 37 37 H 1.09006 * 109.47231 * 299.72306 * 16 15 13 38 38 H 1.09001 * 109.47669 * 59.72347 * 16 15 13 39 39 H 1.08005 * 119.99852 * 359.97438 * 18 17 16 40 40 H 1.07995 * 119.99605 * 180.22708 * 19 18 17 41 41 H 1.08002 * 119.99927 * 179.82650 * 20 19 18 42 42 H 1.09000 * 109.46917 * 29.98579 * 22 21 20 43 43 H 1.09002 * 109.47049 * 149.98124 * 22 21 20 44 44 H 1.09003 * 109.46601 * 29.99718 * 24 23 22 45 45 H 1.09000 * 109.46683 * 60.00367 * 25 24 23 46 46 H 1.09000 * 109.46938 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.47255 * 300.00398 * 25 24 23 48 48 H 1.09003 * 109.46777 * 299.99058 * 26 24 23 49 49 H 1.08995 * 109.47801 * 59.99343 * 26 24 23 50 50 H 1.09000 * 109.46952 * 179.97438 * 26 24 23 51 51 H 1.08000 * 120.00208 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3627 1.9857 -1.1794 5 1 2.8436 2.9526 -1.1704 6 6 2.0937 1.3555 -2.3867 7 7 1.1178 0.4760 -2.4668 8 14 3.1166 1.7560 -3.8976 9 1 4.3452 0.9219 -3.8989 10 1 2.3244 1.4722 -5.1211 11 1 3.4933 3.1922 -3.8738 12 6 2.1381 2.1158 1.2619 13 6 0.8469 2.8387 1.5469 14 8 -0.0821 2.7488 0.7725 15 7 0.7246 3.5852 2.6624 16 6 -0.5327 4.2830 2.9425 17 6 -0.4111 5.0348 4.2430 18 6 -0.7616 4.4213 5.4314 19 6 -0.6462 5.1095 6.6246 20 6 -0.1882 6.4139 6.6287 21 6 0.1572 7.0288 5.4401 22 6 0.6559 8.4509 5.4446 23 8 -0.4508 9.3443 5.3078 24 6 -0.0852 10.7258 5.2999 25 6 -1.0858 11.5134 4.4517 26 6 -0.0954 11.2642 6.7320 27 6 0.0455 6.3392 4.2470 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.9301 0.0354 -3.3104 34 1 2.9502 2.8389 1.1856 35 1 2.3491 1.4164 2.0708 36 1 1.4677 3.6574 3.2816 37 1 -0.7464 4.9845 2.1360 38 1 -1.3424 3.5571 3.0168 39 1 -1.1229 3.4035 5.4277 40 1 -0.9165 4.6290 7.5532 41 1 -0.1007 6.9525 7.5607 42 1 1.1715 8.6521 6.3837 43 1 1.3455 8.5968 4.6131 44 1 0.9139 10.8348 4.8779 45 1 -2.0848 11.4043 4.8738 46 1 -0.8067 12.5670 4.4454 47 1 -1.0785 11.1298 3.4315 48 1 -1.0945 11.1552 7.1539 49 1 0.6174 10.7031 7.3362 50 1 0.1839 12.3178 6.7260 51 1 0.3156 6.8197 3.3183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355665181.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:02 Heat of formation + Delta-G solvation = -32.262494 kcal Electronic energy + Delta-G solvation = -28288.946367 eV Core-core repulsion = 24382.352632 eV Total energy + Delta-G solvation = -3906.593735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.93578 -38.79882 -38.28159 -35.63891 -34.45475 -33.40603 -31.57112 -31.38017 -31.05995 -29.44197 -27.66829 -27.14043 -26.23726 -25.29186 -23.15333 -22.24609 -21.67024 -20.90584 -20.53616 -19.54174 -17.29781 -16.89086 -16.66301 -16.22925 -16.11762 -15.58318 -15.41804 -15.10442 -14.68415 -14.49557 -14.31532 -13.69277 -13.51333 -13.34340 -13.27289 -13.15281 -12.88651 -12.72029 -12.58398 -12.43690 -12.31549 -12.16361 -11.78697 -11.74820 -11.56751 -11.23440 -11.19035 -11.11083 -10.99452 -10.77188 -10.67461 -10.36638 -9.92139 -9.89874 -9.62657 -9.25150 -9.20334 -9.03651 -8.75409 -8.45461 -8.21604 -6.83166 -5.67247 -2.98892 1.04216 1.17987 3.19611 3.44426 3.50923 3.52586 3.63121 3.69154 4.07253 4.41670 4.51211 4.57413 4.62277 4.66635 4.72322 4.81796 4.92146 4.97815 5.04881 5.20425 5.27958 5.34187 5.38382 5.41158 5.41776 5.46413 5.57355 5.58951 5.67852 5.77842 5.83767 5.87054 5.91797 6.10884 6.20414 6.25617 6.32494 6.35000 6.49348 6.68891 6.78206 6.91078 6.99186 7.08673 7.24886 7.33368 7.72608 7.90981 8.16844 8.36331 8.43271 9.17383 9.30882 9.91088 10.34808 11.35905 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.002160 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.820804 B =12962.081893 C =14235.231943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.165 3.835 3 N -0.568 5.568 4 C -0.248 4.248 5 H 0.073 0.927 6 C -0.001 4.001 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.132 3.868 13 C 0.467 3.533 14 O -0.506 6.506 15 N -0.746 5.746 16 C 0.160 3.840 17 C -0.098 4.098 18 C -0.096 4.096 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.095 4.095 22 C 0.105 3.895 23 O -0.376 6.376 24 C 0.079 3.921 25 C -0.151 4.151 26 C -0.175 4.175 27 C -0.080 4.080 28 H 0.009 0.991 29 H 0.017 0.983 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.001 0.999 33 H 0.251 0.749 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.391 0.609 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.064 0.936 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 16.687 21.846 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 N -0.287 5.287 4 C -0.377 4.377 5 H 0.091 0.909 6 C -0.199 4.199 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.000 4.000 13 C 0.251 3.749 14 O -0.378 6.378 15 N -0.403 5.403 16 C 0.036 3.964 17 C -0.099 4.099 18 C -0.114 4.114 19 C -0.143 4.143 20 C -0.116 4.116 21 C -0.095 4.095 22 C 0.028 3.972 23 O -0.296 6.296 24 C 0.021 3.979 25 C -0.208 4.208 26 C -0.233 4.233 27 C -0.099 4.099 28 H 0.028 0.972 29 H 0.036 0.964 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.224 0.776 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.083 0.917 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.630 16.402 20.995 26.692 hybrid contribution 0.740 0.514 -0.310 0.953 sum -0.890 16.915 20.685 26.735 Atomic orbital electron populations 1.22257 0.98575 0.97060 1.02153 1.20934 0.93049 0.83842 0.98101 1.44280 1.73674 1.09652 1.01064 1.19228 1.31322 1.03566 0.83543 0.90882 1.24759 0.97709 1.00110 0.97284 1.70228 1.27005 1.31280 1.24747 0.86321 0.80226 0.77776 0.82630 1.21570 1.21985 1.20810 1.20942 0.92817 0.95226 0.91054 1.23672 0.93178 0.78538 0.79479 1.90694 1.40833 1.60338 1.45903 1.46655 1.15100 1.52514 1.26020 1.20057 0.88667 0.95205 0.92489 1.20017 1.00130 0.94488 0.95241 1.21180 0.98422 0.99937 0.91878 1.21118 1.00375 0.94700 0.98089 1.21018 0.98111 0.94993 0.97431 1.19529 1.01956 0.94397 0.93595 1.21330 0.88679 0.86555 1.00599 1.88034 1.32135 1.15025 1.94358 1.22102 0.98462 0.81815 0.95494 1.21865 0.99660 0.99091 1.00161 1.22303 1.02825 1.01109 0.97014 1.21004 0.97508 0.93837 0.97554 0.97153 0.96397 0.89040 0.89186 0.98074 0.93876 0.90858 0.91510 0.77579 0.91374 0.91387 0.85704 0.85834 0.86171 0.92593 0.92359 0.92186 0.91766 0.91281 0.91825 0.91743 0.92553 0.91666 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.71 37.16 0.32 -3.30 16 2 C 0.17 4.17 5.64 -4.04 -0.02 4.14 16 3 N -0.57 -14.40 2.12 -174.61 -0.37 -14.77 16 4 C -0.25 -6.87 9.70 -15.06 -0.15 -7.02 16 5 H 0.07 1.99 7.93 -52.49 -0.42 1.57 16 6 C 0.00 -0.02 4.90 -17.43 -0.09 -0.11 16 7 N -0.89 -25.92 8.60 55.49 0.48 -25.44 16 8 Si 0.90 22.07 29.62 -169.99 -5.04 17.04 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.13 2.66 6.19 -5.19 -0.03 2.63 16 13 C 0.47 9.51 7.55 -10.98 -0.08 9.43 16 14 O -0.51 -12.92 14.03 5.56 0.08 -12.84 16 15 N -0.75 -11.37 5.55 -61.47 -0.34 -11.71 16 16 C 0.16 2.29 5.80 -5.19 -0.03 2.26 16 17 C -0.10 -1.16 5.25 -104.62 -0.55 -1.70 16 18 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 19 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 20 C -0.10 -0.91 9.70 -39.59 -0.38 -1.29 16 21 C -0.09 -0.97 5.51 -104.62 -0.58 -1.54 16 22 C 0.10 0.92 5.87 36.01 0.21 1.13 16 23 O -0.38 -3.81 9.97 -35.23 -0.35 -4.16 16 24 C 0.08 0.59 3.34 -26.73 -0.09 0.50 16 25 C -0.15 -1.03 9.56 37.16 0.36 -0.68 16 26 C -0.17 -1.07 9.53 37.16 0.35 -0.72 16 27 C -0.08 -0.91 9.36 -39.59 -0.37 -1.28 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.02 0.44 6.42 -51.93 -0.33 0.10 16 30 H 0.09 2.71 6.35 -51.93 -0.33 2.38 16 31 H 0.09 2.48 5.83 -51.93 -0.30 2.18 16 32 H 0.00 0.02 7.98 -51.93 -0.41 -0.39 16 33 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.07 1.34 8.03 -51.93 -0.42 0.93 16 35 H 0.07 1.16 7.95 -51.93 -0.41 0.75 16 36 H 0.39 4.83 8.46 -40.82 -0.35 4.48 16 37 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 38 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 39 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.06 0.40 7.81 -51.93 -0.41 0.00 16 43 H 0.06 0.47 8.03 -51.93 -0.42 0.05 16 44 H 0.06 0.39 7.79 -51.93 -0.40 -0.01 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 50 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 413.58 15.07 6.23 6.23 Total: -1.00 -33.66 413.58 -10.03 -43.68 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.81 Total: 2.45 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.91 Total: -0.48 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.23 Total: -51.92 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.27 Total: -17.00 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.04 Total: 17.04 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.66 -10.03 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355665181.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.418 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds