Wall clock time and date at job start Tue Mar 31 2020 18:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46895 * 109.47359 * 2 1 4 4 C 1.46904 * 111.00263 * 287.48416 * 3 2 1 5 5 C 1.50695 * 109.47226 * 160.41969 * 4 3 2 6 6 H 1.08005 * 120.00072 * 4.64241 * 5 4 3 7 7 C 1.37874 * 120.00144 * 184.63532 * 5 4 3 8 8 N 1.31521 * 119.99868 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00358 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46901 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47229 * 119.99897 * 9 7 5 12 12 H 1.48503 * 109.47290 * 240.00429 * 9 7 5 13 13 C 1.46901 * 111.00088 * 163.52772 * 3 2 1 14 14 C 1.50691 * 109.47478 * 293.95561 * 13 3 2 15 15 O 1.21282 * 119.99969 * 359.97438 * 14 13 3 16 16 N 1.34771 * 120.00277 * 179.97438 * 14 13 3 17 17 C 1.46500 * 120.00239 * 0.02562 * 16 14 13 18 18 C 1.46506 * 120.00424 * 180.02562 * 16 14 13 19 19 H 1.09004 * 109.46872 * 354.68233 * 18 16 14 20 20 C 1.52998 * 109.47039 * 114.67884 * 18 16 14 21 21 C 1.50697 * 109.47222 * 234.68568 * 18 16 14 22 22 C 1.38161 * 120.02497 * 255.34610 * 21 18 16 23 23 C 1.38252 * 120.05460 * 180.02562 * 22 21 18 24 24 C 1.38290 * 120.11012 * 359.97438 * 23 22 21 25 25 C 1.38118 * 120.05674 * 0.02562 * 24 23 22 26 26 C 1.38715 * 120.02951 * 75.07159 * 21 18 16 27 27 O 1.35897 * 120.05351 * 0.02562 * 26 21 18 28 28 C 1.42903 * 117.00074 * 179.97438 * 27 26 21 29 29 H 1.08999 * 109.47295 * 66.87236 * 1 2 3 30 30 H 1.09000 * 109.47188 * 186.87191 * 1 2 3 31 31 H 1.09003 * 109.47166 * 306.86897 * 1 2 3 32 32 H 1.09009 * 109.47203 * 240.00032 * 2 1 3 33 33 H 1.09006 * 109.47688 * 120.00602 * 2 1 3 34 34 H 1.08994 * 109.47224 * 280.42365 * 4 3 2 35 35 H 1.09000 * 109.47008 * 40.42480 * 4 3 2 36 36 H 0.96999 * 119.99403 * 180.02562 * 8 7 5 37 37 H 1.09008 * 109.46861 * 173.95661 * 13 3 2 38 38 H 1.09000 * 109.47260 * 53.96196 * 13 3 2 39 39 H 1.08998 * 109.47608 * 92.90234 * 17 16 14 40 40 H 1.09006 * 109.47340 * 212.90734 * 17 16 14 41 41 H 1.09002 * 109.46464 * 332.90123 * 17 16 14 42 42 H 1.09001 * 109.46778 * 60.01155 * 20 18 16 43 43 H 1.09007 * 109.47186 * 179.97438 * 20 18 16 44 44 H 1.08992 * 109.47708 * 300.00300 * 20 18 16 45 45 H 1.07994 * 119.98037 * 359.97438 * 22 21 18 46 46 H 1.08007 * 119.94272 * 179.97438 * 23 22 21 47 47 H 1.08000 * 119.96827 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.03197 * 179.97438 * 25 24 23 49 49 H 1.09000 * 109.47192 * 300.00198 * 28 27 26 50 50 H 1.09001 * 109.47138 * 59.99332 * 28 27 26 51 51 H 1.08995 * 109.47389 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.8067 2.0187 -1.3081 5 6 1.8582 3.5169 -1.1547 6 1 2.1059 3.9537 -0.1985 7 6 1.5893 4.3302 -2.2351 8 7 1.2874 3.7983 -3.3995 9 14 1.6539 6.1874 -2.0453 10 1 2.0136 6.5296 -0.6457 11 1 2.6741 6.7443 -2.9695 12 1 0.3246 6.7646 -2.3694 13 6 3.4350 1.4428 0.3889 14 6 3.5794 1.0116 1.8255 15 8 2.5996 0.6882 2.4630 16 7 4.7973 0.9851 2.4021 17 6 5.9808 1.3762 1.6323 18 6 4.9377 0.5653 3.7986 19 1 3.9500 0.4053 4.2310 20 6 5.7390 -0.7366 3.8617 21 6 5.6583 1.6369 4.5753 22 6 6.9819 1.4616 4.9305 23 6 7.6435 2.4441 5.6435 24 6 6.9828 3.6047 6.0025 25 6 5.6596 3.7848 5.6497 26 6 4.9950 2.8027 4.9292 27 8 3.6946 2.9796 4.5766 28 6 3.0751 4.2042 4.9752 29 1 -0.3634 0.4036 -0.9451 30 1 -0.3633 -1.0203 0.1230 31 1 -0.3634 0.6166 0.8222 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.5861 1.6971 -1.9988 35 1 0.8319 1.7268 -1.6988 36 1 1.0986 4.3705 -4.1596 37 1 3.8010 2.4636 0.2774 38 1 4.0150 0.7772 -0.2504 39 1 6.1813 2.4363 1.7875 40 1 6.8392 0.7917 1.9637 41 1 5.8025 1.1914 0.5730 42 1 6.7268 -0.5765 3.4295 43 1 5.8439 -1.0487 4.9008 44 1 5.2178 -1.5116 3.3000 45 1 7.5001 0.5560 4.6518 46 1 8.6781 2.3050 5.9206 47 1 7.5017 4.3706 6.5598 48 1 5.1438 4.6912 5.9306 49 1 3.0976 4.2858 6.0619 50 1 3.6144 5.0438 4.5367 51 1 2.0411 4.2172 4.6308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356664063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:11 Heat of formation + Delta-G solvation = -29.308861 kcal Electronic energy + Delta-G solvation = -30445.564285 eV Core-core repulsion = 26539.098628 eV Total energy + Delta-G solvation = -3906.465656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60716 -39.34699 -37.61171 -36.53641 -35.41957 -32.72914 -32.53963 -30.30886 -30.15039 -29.39635 -27.70030 -27.19951 -26.64365 -25.33690 -23.79946 -22.46741 -22.03715 -21.09917 -19.82004 -18.66392 -18.11023 -16.86923 -16.45163 -16.29684 -15.99163 -15.75326 -15.40040 -15.07958 -14.61627 -14.53068 -14.23029 -14.07767 -13.69974 -13.66361 -13.40202 -12.82805 -12.81281 -12.50214 -12.40278 -12.21365 -12.18084 -12.09786 -11.91395 -11.84845 -11.58510 -11.28882 -11.14111 -11.07219 -10.99960 -10.81950 -10.80300 -10.76876 -10.48416 -10.18560 -9.78823 -9.28381 -9.13351 -8.84914 -8.40832 -8.36782 -8.18223 -7.13549 -5.99197 -3.99858 1.12728 1.33416 3.18064 3.24835 3.31785 3.33754 3.39351 3.44291 3.75714 4.45120 4.47940 4.66622 4.84331 4.94866 5.01709 5.07895 5.14029 5.18209 5.22774 5.25334 5.32715 5.34453 5.36703 5.49790 5.55983 5.58144 5.59744 5.79618 5.87420 5.91654 5.92884 5.97130 6.03927 6.16966 6.22742 6.24221 6.32724 6.34472 6.38000 6.53056 6.65936 6.75845 6.84932 7.01750 7.27080 7.37920 7.39095 7.70891 7.87434 8.17144 8.26814 8.59954 8.77000 9.08293 9.64023 11.11343 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.003766 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.405078 B = 7433.103593 C = 8635.160294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 N -0.518 5.518 4 C 0.191 3.809 5 C -0.501 4.501 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.050 3.950 14 C 0.520 3.480 15 O -0.516 6.516 16 N -0.614 5.614 17 C 0.081 3.919 18 C 0.187 3.813 19 H 0.109 0.891 20 C -0.161 4.161 21 C -0.130 4.130 22 C -0.074 4.074 23 C -0.165 4.165 24 C -0.079 4.079 25 C -0.214 4.214 26 C 0.149 3.851 27 O -0.296 6.296 28 C 0.029 3.971 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.013 0.987 33 H 0.070 0.930 34 H -0.012 1.012 35 H 0.040 0.960 36 H 0.260 0.740 37 H 0.106 0.894 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.131 0.869 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.127 0.873 49 H 0.051 0.949 50 H 0.054 0.946 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.429 -4.818 17.506 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.076 4.076 3 N -0.243 5.243 4 C 0.067 3.933 5 C -0.540 4.540 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.210 1.210 13 C -0.081 4.081 14 C 0.309 3.691 15 O -0.390 6.390 16 N -0.349 5.349 17 C -0.062 4.062 18 C 0.084 3.916 19 H 0.127 0.873 20 C -0.219 4.219 21 C -0.131 4.131 22 C -0.093 4.093 23 C -0.183 4.183 24 C -0.097 4.097 25 C -0.233 4.233 26 C 0.102 3.898 27 O -0.208 6.208 28 C -0.066 4.066 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.088 0.912 34 H 0.006 0.994 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.149 0.851 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.144 0.856 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.388 -4.810 17.872 22.271 hybrid contribution 0.704 1.131 -0.545 1.439 sum 13.092 -3.679 17.327 22.026 Atomic orbital electron populations 1.21652 0.95531 0.99768 1.02452 1.22055 0.96289 0.90276 0.98996 1.61854 1.13542 1.15400 1.33525 1.19823 0.96681 0.94259 0.82584 1.21214 1.46099 0.90719 0.95980 0.91989 1.24970 0.95563 0.98792 0.95240 1.69970 1.48125 1.35055 1.00787 0.86492 0.77577 0.85617 0.78027 1.19766 1.21176 1.21035 1.21879 0.92768 1.02646 0.90808 1.21010 0.81838 0.76458 0.89807 1.90612 1.36932 1.46868 1.64604 1.47944 1.07364 1.68459 1.11167 1.21690 0.87980 1.00094 0.96468 1.19560 1.00232 0.90369 0.81411 0.87289 1.22211 1.00389 0.97073 1.02219 1.19497 0.94521 0.95298 1.03823 1.20998 0.92679 0.99041 0.96562 1.20998 1.00204 0.94801 1.02311 1.20922 0.93685 0.97184 0.97948 1.21260 0.96688 1.00277 1.05068 1.18989 0.84148 0.93622 0.93031 1.86284 1.21665 1.39261 1.73578 1.23079 0.99073 0.85043 0.99427 0.92777 0.93921 0.91994 0.96853 0.91179 0.99421 0.94174 0.93051 0.87572 0.93731 0.92996 0.91690 0.90694 0.92133 0.91480 0.91881 0.85092 0.86090 0.86092 0.85557 0.93052 0.92761 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.87 37.15 0.37 -2.29 16 2 C 0.05 1.07 5.23 -3.83 -0.02 1.05 16 3 N -0.52 -11.93 4.11 -237.52 -0.98 -12.90 16 4 C 0.19 5.05 4.59 -4.98 -0.02 5.03 16 5 C -0.50 -14.19 8.61 -34.44 -0.30 -14.48 16 6 H 0.06 1.77 7.65 -52.48 -0.40 1.37 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 C 0.05 1.00 3.79 -4.98 -0.02 0.98 16 14 C 0.52 9.63 7.23 -10.99 -0.08 9.55 16 15 O -0.52 -11.05 13.82 5.56 0.08 -10.97 16 16 N -0.61 -8.99 2.75 -175.26 -0.48 -9.47 16 17 C 0.08 0.96 9.53 59.85 0.57 1.53 16 18 C 0.19 2.48 2.48 -69.08 -0.17 2.31 16 19 H 0.11 1.75 6.78 -51.93 -0.35 1.40 16 20 C -0.16 -1.60 8.08 37.16 0.30 -1.30 16 21 C -0.13 -1.60 4.70 -104.48 -0.49 -2.09 16 22 C -0.07 -0.73 9.09 -39.60 -0.36 -1.09 16 23 C -0.16 -1.49 10.04 -39.56 -0.40 -1.89 16 24 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 25 C -0.21 -2.40 9.04 -39.43 -0.36 -2.75 16 26 C 0.15 2.00 6.66 -39.21 -0.26 1.74 16 27 O -0.30 -4.55 9.83 -19.42 -0.19 -4.74 16 28 C 0.03 0.34 9.81 101.05 0.99 1.33 16 29 H 0.05 1.11 6.79 -51.93 -0.35 0.76 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.01 0.27 8.05 -51.92 -0.42 -0.15 16 33 H 0.07 1.42 5.81 -51.93 -0.30 1.12 16 34 H -0.01 -0.33 8.00 -51.93 -0.42 -0.74 16 35 H 0.04 1.14 6.38 -51.93 -0.33 0.80 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.11 2.21 7.28 -51.92 -0.38 1.83 16 38 H 0.05 0.81 7.39 -51.93 -0.38 0.43 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.60 6.72 -51.93 -0.35 0.25 16 41 H 0.07 0.87 6.33 -51.93 -0.33 0.54 16 42 H 0.06 0.50 5.58 -51.93 -0.29 0.21 16 43 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.13 1.01 5.96 -52.49 -0.31 0.69 16 46 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 49 H 0.05 0.48 7.65 -51.93 -0.40 0.09 16 50 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 51 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -33.56 402.50 -8.79 -42.35 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -8.26 Total: 0.99 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.74 Total: -2.06 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.72 Total: -48.35 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.11 Total: -15.71 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.56 -8.79 -42.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356664063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.045 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds