Wall clock time and date at job start Tue Mar 31 2020 18:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46895 * 109.47359 * 2 1 4 4 C 1.46904 * 111.00263 * 287.48416 * 3 2 1 5 5 C 1.50695 * 109.47226 * 160.41969 * 4 3 2 6 6 H 1.08005 * 120.00072 * 4.64241 * 5 4 3 7 7 C 1.37874 * 120.00144 * 184.63532 * 5 4 3 8 8 N 1.31521 * 119.99868 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00358 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46901 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47229 * 119.99897 * 9 7 5 12 12 H 1.48503 * 109.47290 * 240.00429 * 9 7 5 13 13 C 1.46901 * 111.00088 * 163.52772 * 3 2 1 14 14 C 1.50691 * 109.47478 * 293.95561 * 13 3 2 15 15 O 1.21282 * 119.99969 * 359.97438 * 14 13 3 16 16 N 1.34771 * 120.00277 * 179.97438 * 14 13 3 17 17 C 1.46500 * 120.00239 * 0.02562 * 16 14 13 18 18 C 1.46506 * 120.00424 * 180.02562 * 16 14 13 19 19 H 1.09004 * 109.46872 * 354.68233 * 18 16 14 20 20 C 1.52998 * 109.47039 * 114.67884 * 18 16 14 21 21 C 1.50697 * 109.47222 * 234.68568 * 18 16 14 22 22 C 1.38161 * 120.02497 * 255.34610 * 21 18 16 23 23 C 1.38252 * 120.05460 * 180.02562 * 22 21 18 24 24 C 1.38290 * 120.11012 * 359.97438 * 23 22 21 25 25 C 1.38118 * 120.05674 * 0.02562 * 24 23 22 26 26 C 1.38715 * 120.02951 * 75.07159 * 21 18 16 27 27 O 1.35897 * 120.05351 * 0.02562 * 26 21 18 28 28 C 1.42903 * 117.00074 * 179.97438 * 27 26 21 29 29 H 1.08999 * 109.47295 * 66.87236 * 1 2 3 30 30 H 1.09000 * 109.47188 * 186.87191 * 1 2 3 31 31 H 1.09003 * 109.47166 * 306.86897 * 1 2 3 32 32 H 1.09009 * 109.47203 * 240.00032 * 2 1 3 33 33 H 1.09006 * 109.47688 * 120.00602 * 2 1 3 34 34 H 1.08994 * 109.47224 * 280.42365 * 4 3 2 35 35 H 1.09000 * 109.47008 * 40.42480 * 4 3 2 36 36 H 0.96999 * 119.99403 * 180.02562 * 8 7 5 37 37 H 1.09008 * 109.46861 * 173.95661 * 13 3 2 38 38 H 1.09000 * 109.47260 * 53.96196 * 13 3 2 39 39 H 1.08998 * 109.47608 * 92.90234 * 17 16 14 40 40 H 1.09006 * 109.47340 * 212.90734 * 17 16 14 41 41 H 1.09002 * 109.46464 * 332.90123 * 17 16 14 42 42 H 1.09001 * 109.46778 * 60.01155 * 20 18 16 43 43 H 1.09007 * 109.47186 * 179.97438 * 20 18 16 44 44 H 1.08992 * 109.47708 * 300.00300 * 20 18 16 45 45 H 1.07994 * 119.98037 * 359.97438 * 22 21 18 46 46 H 1.08007 * 119.94272 * 179.97438 * 23 22 21 47 47 H 1.08000 * 119.96827 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.03197 * 179.97438 * 25 24 23 49 49 H 1.09000 * 109.47192 * 300.00198 * 28 27 26 50 50 H 1.09001 * 109.47138 * 59.99332 * 28 27 26 51 51 H 1.08995 * 109.47389 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.8067 2.0187 -1.3081 5 6 1.8582 3.5169 -1.1547 6 1 2.1059 3.9537 -0.1985 7 6 1.5893 4.3302 -2.2351 8 7 1.2874 3.7983 -3.3995 9 14 1.6539 6.1874 -2.0453 10 1 2.0136 6.5296 -0.6457 11 1 2.6741 6.7443 -2.9695 12 1 0.3246 6.7646 -2.3694 13 6 3.4350 1.4428 0.3889 14 6 3.5794 1.0116 1.8255 15 8 2.5996 0.6882 2.4630 16 7 4.7973 0.9851 2.4021 17 6 5.9808 1.3762 1.6323 18 6 4.9377 0.5653 3.7986 19 1 3.9500 0.4053 4.2310 20 6 5.7390 -0.7366 3.8617 21 6 5.6583 1.6369 4.5753 22 6 6.9819 1.4616 4.9305 23 6 7.6435 2.4441 5.6435 24 6 6.9828 3.6047 6.0025 25 6 5.6596 3.7848 5.6497 26 6 4.9950 2.8027 4.9292 27 8 3.6946 2.9796 4.5766 28 6 3.0751 4.2042 4.9752 29 1 -0.3634 0.4036 -0.9451 30 1 -0.3633 -1.0203 0.1230 31 1 -0.3634 0.6166 0.8222 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.5861 1.6971 -1.9988 35 1 0.8319 1.7268 -1.6988 36 1 1.0986 4.3705 -4.1596 37 1 3.8010 2.4636 0.2774 38 1 4.0150 0.7772 -0.2504 39 1 6.1813 2.4363 1.7875 40 1 6.8392 0.7917 1.9637 41 1 5.8025 1.1914 0.5730 42 1 6.7268 -0.5765 3.4295 43 1 5.8439 -1.0487 4.9008 44 1 5.2178 -1.5116 3.3000 45 1 7.5001 0.5560 4.6518 46 1 8.6781 2.3050 5.9206 47 1 7.5017 4.3706 6.5598 48 1 5.1438 4.6912 5.9306 49 1 3.0976 4.2858 6.0619 50 1 3.6144 5.0438 4.5367 51 1 2.0411 4.2172 4.6308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356664063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:10 Heat of formation + Delta-G solvation = -50.332462 kcal Electronic energy + Delta-G solvation = -30446.475936 eV Core-core repulsion = 26539.098628 eV Total energy + Delta-G solvation = -3907.377308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.60539 -40.63781 -38.66491 -38.02125 -36.75625 -34.71588 -33.77050 -31.83730 -31.04025 -30.36762 -29.55364 -28.12246 -27.69579 -27.05417 -24.86589 -24.36862 -22.85747 -22.34379 -21.35074 -19.95693 -19.00864 -18.59562 -18.16862 -17.44511 -17.00327 -16.88689 -16.57327 -16.53640 -16.17976 -15.88073 -15.43659 -15.23736 -15.18560 -14.87142 -14.44201 -14.27455 -14.16782 -14.04134 -13.59096 -13.36204 -13.29977 -13.20110 -13.06485 -12.88653 -12.87872 -12.80282 -12.68771 -12.67614 -12.59549 -12.26425 -12.09952 -12.01079 -11.80405 -11.70528 -11.61173 -11.32782 -10.64938 -10.51310 -9.83431 -9.56234 -9.08218 -8.96905 -8.18506 -6.28083 0.32547 0.52670 1.38917 1.40634 1.53499 1.75391 2.08460 2.40723 2.43784 2.90142 3.12541 3.32661 3.56865 3.80798 3.88778 4.06854 4.21023 4.21795 4.23906 4.29113 4.29194 4.30801 4.38101 4.47888 4.50692 4.53587 4.55165 4.65375 4.68109 4.71486 4.72832 4.78638 4.89108 4.91340 5.02572 5.04592 5.09916 5.23519 5.25074 5.26378 5.35930 5.46981 5.50945 5.60723 5.67347 5.72201 5.92264 6.08764 6.26430 6.50136 6.52424 6.62657 6.86248 7.35344 7.41063 8.92002 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.003766 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.405078 B = 7433.103593 C = 8635.160294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.054 3.946 3 N -0.535 5.535 4 C 0.209 3.791 5 C -0.518 4.518 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.269 1.269 11 H -0.274 1.274 12 H -0.279 1.279 13 C 0.053 3.947 14 C 0.521 3.479 15 O -0.554 6.554 16 N -0.603 5.603 17 C 0.076 3.924 18 C 0.187 3.813 19 H 0.071 0.929 20 C -0.152 4.152 21 C -0.146 4.146 22 C -0.069 4.069 23 C -0.159 4.159 24 C -0.080 4.080 25 C -0.223 4.223 26 C 0.116 3.884 27 O -0.334 6.334 28 C 0.026 3.974 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.019 0.981 33 H 0.075 0.925 34 H -0.031 1.031 35 H 0.015 0.985 36 H 0.265 0.735 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.158 0.842 46 H 0.153 0.847 47 H 0.148 0.852 48 H 0.135 0.865 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.498 -4.582 18.959 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.073 4.073 3 N -0.260 5.260 4 C 0.084 3.916 5 C -0.556 4.556 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.193 1.193 11 H -0.199 1.199 12 H -0.205 1.205 13 C -0.078 4.078 14 C 0.310 3.690 15 O -0.431 6.431 16 N -0.337 5.337 17 C -0.066 4.066 18 C 0.085 3.915 19 H 0.089 0.911 20 C -0.210 4.210 21 C -0.148 4.148 22 C -0.087 4.087 23 C -0.177 4.177 24 C -0.098 4.098 25 C -0.242 4.242 26 C 0.070 3.930 27 O -0.247 6.247 28 C -0.068 4.068 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.094 0.906 34 H -0.013 1.013 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.175 0.825 46 H 0.171 0.829 47 H 0.165 0.835 48 H 0.152 0.848 49 H 0.091 0.909 50 H 0.077 0.923 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.512 -4.581 19.347 25.217 hybrid contribution -0.163 1.042 -0.923 1.401 sum 15.348 -3.540 18.424 24.240 Atomic orbital electron populations 1.21602 0.94875 1.01450 1.00814 1.22085 0.96876 0.89005 0.99373 1.61760 1.15911 1.16955 1.31377 1.19452 0.94555 0.93840 0.83793 1.21409 1.46551 0.91870 0.95796 0.92872 1.25809 0.94823 1.03756 0.94729 1.70080 1.48588 1.36982 1.01567 0.85413 0.77905 0.79489 0.78276 1.19302 1.19910 1.20495 1.21822 0.91152 1.02324 0.92478 1.20681 0.82794 0.76520 0.89041 1.90591 1.38464 1.48972 1.65117 1.47933 1.06804 1.66913 1.12072 1.21894 0.87855 1.00540 0.96309 1.19611 0.99275 0.92567 0.80088 0.91106 1.22161 1.00711 0.94618 1.03499 1.19558 0.95670 0.94816 1.04753 1.21289 0.91434 1.00173 0.95814 1.21416 1.01516 0.93945 1.00847 1.21315 0.92955 0.98133 0.97355 1.21460 0.97641 1.00167 1.04918 1.19373 0.83747 0.95079 0.94751 1.86221 1.23210 1.40577 1.74679 1.23146 0.98406 0.84437 1.00829 0.94403 0.90520 0.93538 0.96263 0.90622 1.01328 0.96702 0.92649 0.89007 0.91984 0.93343 0.88164 0.90663 0.89652 0.89735 0.92863 0.82478 0.82933 0.83460 0.84764 0.90883 0.92267 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 9.87 71.98 0.71 -4.47 16 2 C 0.05 2.29 5.23 86.30 0.45 2.74 16 3 N -0.53 -25.59 4.11 -905.39 -3.73 -29.32 16 4 C 0.21 11.52 4.59 85.55 0.39 11.92 16 5 C -0.52 -30.19 8.61 25.60 0.22 -29.97 16 6 H 0.05 3.13 7.65 -2.91 -0.02 3.11 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 9 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 C 0.05 2.19 3.79 85.55 0.32 2.51 16 14 C 0.52 19.88 7.23 87.66 0.63 20.52 16 15 O -0.55 -24.80 13.82 -3.04 -0.04 -24.84 16 16 N -0.60 -17.59 2.75 -826.80 -2.28 -19.87 16 17 C 0.08 1.69 9.53 127.77 1.22 2.91 16 18 C 0.19 4.87 2.48 44.24 0.11 4.98 16 19 H 0.07 2.40 6.78 -2.38 -0.02 2.38 16 20 C -0.15 -2.68 8.08 71.98 0.58 -2.09 16 21 C -0.15 -3.43 4.70 -19.77 -0.09 -3.52 16 22 C -0.07 -1.11 9.09 22.25 0.20 -0.91 16 23 C -0.16 -2.23 10.04 22.29 0.22 -2.01 16 24 C -0.08 -1.27 10.04 22.25 0.22 -1.04 16 25 C -0.22 -4.71 9.04 22.37 0.20 -4.51 16 26 C 0.12 3.12 6.66 22.51 0.15 3.27 16 27 O -0.33 -10.77 9.83 -92.40 -0.91 -11.68 16 28 C 0.03 0.66 9.81 113.37 1.11 1.77 16 29 H 0.04 1.60 6.79 -2.39 -0.02 1.58 16 30 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.02 0.78 8.05 -2.38 -0.02 0.76 16 33 H 0.08 3.12 5.81 -2.38 -0.01 3.11 16 34 H -0.03 -1.78 8.00 -2.39 -0.02 -1.80 16 35 H 0.01 0.89 6.38 -2.39 -0.02 0.87 16 36 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.09 3.98 7.28 -2.38 -0.02 3.96 16 38 H 0.06 2.29 7.39 -2.39 -0.02 2.27 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.51 6.72 -2.38 -0.02 1.50 16 41 H 0.07 1.67 6.33 -2.39 -0.02 1.65 16 42 H 0.08 1.06 5.58 -2.39 -0.01 1.05 16 43 H 0.08 1.21 8.12 -2.38 -0.02 1.19 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.16 1.63 5.96 -2.91 -0.02 1.62 16 46 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 48 H 0.13 2.46 6.30 -2.91 -0.02 2.44 16 49 H 0.07 1.41 7.65 -2.39 -0.02 1.39 16 50 H 0.06 1.34 7.67 -2.39 -0.02 1.32 16 51 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -75.95 402.50 3.40 -72.56 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.91 Total: 19.17 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 7.12 Total: 2.95 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -5.72 Total: -105.14 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.95 Total: -36.52 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -75.95 3.40 -72.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356664063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.227 kcal (2) G-P(sol) polarization free energy of solvation -75.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds