Wall clock time and date at job start Tue Mar 31 2020 18:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 N 1.46496 * 109.46844 * 120.00293 * 2 1 3 5 5 C 1.34777 * 120.00266 * 85.00291 * 4 2 1 6 6 O 1.21274 * 120.00135 * 0.27234 * 5 4 2 7 7 C 1.50706 * 119.99766 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.46740 * 59.99879 * 7 5 4 9 9 C 1.52997 * 109.47238 * 299.99577 * 7 5 4 10 10 N 1.46902 * 109.46577 * 179.97438 * 7 5 4 11 11 C 1.46911 * 110.99614 * 205.00147 * 10 7 5 12 12 C 1.50700 * 109.46831 * 179.97438 * 11 10 7 13 13 C 1.38288 * 119.97128 * 269.72400 * 12 11 10 14 14 C 1.38244 * 120.10790 * 179.73080 * 13 12 11 15 15 C 1.38166 * 120.05784 * 0.54497 * 14 13 12 16 16 C 1.38713 * 119.94124 * 359.72758 * 15 14 13 17 17 O 1.35902 * 120.05492 * 179.97438 * 16 15 14 18 18 C 1.42903 * 116.99857 * 0.02562 * 17 16 15 19 19 C 1.52999 * 109.47168 * 180.02562 * 18 17 16 20 20 C 1.50693 * 109.47517 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99926 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00259 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00274 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99968 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47107 * 60.00149 * 24 22 20 26 26 H 1.48496 * 109.47289 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47176 * 299.99917 * 24 22 20 28 28 C 1.38119 * 119.97017 * 89.99896 * 12 11 10 29 29 H 1.09002 * 109.47121 * 60.00062 * 1 2 3 30 30 H 1.09001 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47516 * 299.99745 * 1 2 3 32 32 H 1.09002 * 109.46901 * 239.99834 * 2 1 3 33 33 H 1.08997 * 109.47162 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46987 * 300.00020 * 3 2 1 35 35 H 1.09007 * 109.46959 * 59.99745 * 3 2 1 36 36 H 0.96999 * 119.99691 * 264.99277 * 4 2 1 37 37 H 1.09002 * 109.47153 * 180.02562 * 9 7 5 38 38 H 1.08996 * 109.46952 * 300.00294 * 9 7 5 39 39 H 1.09001 * 109.46832 * 60.00314 * 9 7 5 40 40 H 1.00892 * 111.00195 * 81.05248 * 10 7 5 41 41 H 1.09000 * 109.46786 * 299.99838 * 11 10 7 42 42 H 1.09000 * 109.46923 * 59.99884 * 11 10 7 43 43 H 1.07995 * 119.94536 * 359.97438 * 13 12 11 44 44 H 1.07999 * 119.97590 * 180.25478 * 14 13 12 45 45 H 1.07997 * 120.03151 * 179.74987 * 15 14 13 46 46 H 1.08991 * 109.47416 * 300.00242 * 18 17 16 47 47 H 1.09000 * 109.46749 * 60.00615 * 18 17 16 48 48 H 1.09000 * 109.47257 * 300.00946 * 19 18 17 49 49 H 1.09007 * 109.47054 * 59.99950 * 19 18 17 50 50 H 0.96999 * 120.00456 * 180.02562 * 23 22 20 51 51 H 1.08000 * 120.03060 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1470 -2.0323 1.1943 6 8 1.8634 -2.6673 0.2008 7 6 2.6498 -2.7426 2.4247 8 1 1.9775 -2.5436 3.2593 9 6 4.0525 -2.2372 2.7679 10 7 2.6986 -4.1885 2.1696 11 6 2.5970 -4.9479 3.4231 12 6 2.6499 -6.4235 3.1221 13 6 1.4808 -7.1217 2.8807 14 6 1.5265 -8.4743 2.5988 15 6 2.7399 -9.1343 2.5687 16 6 3.9135 -8.4374 2.8160 17 8 5.1082 -9.0845 2.7875 18 6 5.0817 -10.4831 2.4955 19 6 6.5091 -11.0339 2.5082 20 6 6.4813 -12.5086 2.1997 21 1 5.5397 -13.0036 2.0128 22 6 7.6578 -13.2261 2.1559 23 7 8.8043 -12.6237 2.3839 24 14 7.6233 -15.0541 1.7728 25 1 7.0229 -15.2675 0.4314 26 1 9.0087 -15.5887 1.7851 27 1 6.8110 -15.7592 2.7965 28 6 3.8654 -7.0787 3.0932 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.2490 -0.1824 1.9894 37 1 4.4164 -2.7513 3.6575 38 1 4.7247 -2.4361 1.9333 39 1 4.0159 -1.1644 2.9572 40 1 3.5342 -4.4382 1.6623 41 1 3.4262 -4.6803 4.0781 42 1 1.6539 -4.7114 3.9157 43 1 0.5310 -6.6086 2.9085 44 1 0.6125 -9.0166 2.4065 45 1 2.7747 -10.1919 2.3524 46 1 4.4865 -11.0002 3.2481 47 1 4.6399 -10.6405 1.5116 48 1 7.1048 -10.5168 1.7559 49 1 6.9506 -10.8764 3.4923 50 1 9.6321 -13.1284 2.3528 51 1 4.7778 -6.5339 3.2858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414543211.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:16 Heat of formation + Delta-G solvation = -68.041502 kcal Electronic energy + Delta-G solvation = -27503.773362 eV Core-core repulsion = 23595.628132 eV Total energy + Delta-G solvation = -3908.145229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.28022 -39.73833 -37.71582 -36.61118 -35.80822 -33.38122 -32.72168 -31.39306 -30.77964 -29.37740 -28.89813 -27.66958 -25.79249 -24.93639 -24.11483 -22.25696 -21.68015 -21.50450 -20.57782 -20.14693 -17.97638 -17.12769 -16.69672 -16.21591 -15.94691 -15.63803 -15.55862 -15.28467 -15.07041 -14.87388 -14.51402 -14.48586 -14.24839 -13.91047 -13.40007 -13.18526 -13.05281 -12.82210 -12.76957 -12.70922 -12.55939 -12.49190 -12.31086 -12.11429 -11.92620 -11.73874 -11.39910 -11.33797 -11.30445 -11.26619 -10.84213 -10.73191 -10.44253 -9.93795 -9.83305 -9.64757 -9.40857 -9.30290 -8.82105 -8.53750 -8.43667 -7.79814 -6.09393 -4.14099 1.45430 1.73863 2.45879 2.75866 3.29691 3.33915 3.35769 3.77090 3.88173 4.21137 4.30550 4.41882 4.48966 4.54438 4.62314 4.67537 4.79881 4.81170 4.97700 5.11172 5.12798 5.14884 5.24360 5.26930 5.28820 5.33042 5.34472 5.44344 5.48349 5.53477 5.62070 5.67318 5.69064 5.83811 5.85189 6.05576 6.09092 6.18068 6.21078 6.57646 6.58588 6.59212 6.74991 6.76465 7.02065 7.07398 7.24667 7.51624 7.64998 7.82575 8.04842 8.08245 8.24973 8.91213 9.50156 11.02099 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021290 B = 0.001651 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.881126 B =16955.906527 C =17405.689123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 C -0.160 4.160 4 N -0.733 5.733 5 C 0.517 3.483 6 O -0.513 6.513 7 C 0.068 3.932 8 H 0.103 0.897 9 C -0.181 4.181 10 N -0.661 5.661 11 C 0.105 3.895 12 C -0.052 4.052 13 C -0.146 4.146 14 C -0.082 4.082 15 C -0.209 4.209 16 C 0.144 3.856 17 O -0.317 6.317 18 C 0.065 3.935 19 C 0.026 3.974 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.890 5.890 24 Si 0.899 3.101 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.275 1.275 28 C -0.155 4.155 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.397 0.603 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.353 0.647 41 H 0.042 0.958 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.129 0.871 46 H 0.050 0.950 47 H 0.051 0.949 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.264 0.736 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.991 28.872 1.676 33.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 C -0.218 4.218 4 N -0.388 5.388 5 C 0.302 3.698 6 O -0.386 6.386 7 C -0.046 4.046 8 H 0.121 0.879 9 C -0.241 4.241 10 N -0.293 5.293 11 C -0.023 4.023 12 C -0.053 4.053 13 C -0.165 4.165 14 C -0.100 4.100 15 C -0.228 4.228 16 C 0.097 3.903 17 O -0.230 6.230 18 C -0.009 4.009 19 C -0.011 4.011 20 C -0.566 4.566 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.528 5.528 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.174 4.174 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.231 0.769 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.173 0.827 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.147 0.853 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.046 0.954 50 H 0.073 0.927 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.464 28.366 0.826 32.808 hybrid contribution 0.873 -0.808 0.502 1.291 sum -15.591 27.559 1.327 31.691 Atomic orbital electron populations 1.22187 0.95346 1.02762 1.01919 1.20901 0.94150 0.92689 0.89064 1.22076 1.01713 0.95113 1.02878 1.46152 1.68812 1.07079 1.16712 1.20622 0.77568 0.81795 0.89821 1.90726 1.47940 1.65610 1.34345 1.21471 0.97430 0.89787 0.95909 0.87875 1.22482 0.96464 1.02114 1.03009 1.60155 1.46918 1.01668 1.20556 1.20884 1.01454 0.89536 0.90457 1.19314 0.92595 0.94181 0.99195 1.20759 0.97587 0.94139 1.03990 1.20897 0.97053 0.94404 0.97611 1.21399 0.92492 1.01066 1.07843 1.19134 0.85554 0.92012 0.93584 1.86164 1.26582 1.25785 1.84454 1.23322 1.03241 0.75624 0.98687 1.19117 0.88050 0.95201 0.98780 1.20941 0.93231 0.93005 1.49402 0.92404 1.24984 0.95349 0.98805 0.95001 1.69962 0.97751 1.36385 1.48665 0.86543 0.77138 0.84662 0.79002 1.20086 1.21116 1.20093 1.20251 0.97848 0.92160 1.07182 0.91734 0.91946 0.92602 0.89481 0.91981 0.90956 0.92135 0.76949 0.91128 0.91526 0.91529 0.82675 0.93973 0.90055 0.86364 0.86164 0.85282 0.93158 0.93120 0.95416 0.95432 0.92667 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.48 37.16 0.35 -0.68 16 2 C 0.14 0.87 3.19 -67.93 -0.22 0.65 16 3 C -0.16 -0.60 9.38 37.16 0.35 -0.25 16 4 N -0.73 -4.61 4.97 -53.81 -0.27 -4.87 16 5 C 0.52 4.95 7.19 -10.98 -0.08 4.88 16 6 O -0.51 -7.40 16.09 5.56 0.09 -7.31 16 7 C 0.07 0.51 3.00 -68.86 -0.21 0.31 16 8 H 0.10 0.60 7.80 -51.93 -0.40 0.20 16 9 C -0.18 -1.02 9.06 37.16 0.34 -0.69 16 10 N -0.66 -6.85 5.73 -109.21 -0.63 -7.48 16 11 C 0.10 1.02 5.61 -4.97 -0.03 0.99 16 12 C -0.05 -0.68 5.39 -104.65 -0.56 -1.24 16 13 C -0.15 -1.90 9.70 -39.56 -0.38 -2.28 16 14 C -0.08 -1.13 10.04 -39.61 -0.40 -1.52 16 15 C -0.21 -3.39 9.04 -39.43 -0.36 -3.75 16 16 C 0.14 2.57 6.69 -39.22 -0.26 2.30 16 17 O -0.32 -6.63 10.14 -19.43 -0.20 -6.83 16 18 C 0.07 1.43 4.68 37.16 0.17 1.60 16 19 C 0.03 0.68 5.34 -27.89 -0.15 0.53 16 20 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 21 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 24 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 C -0.16 -2.35 9.64 -39.43 -0.38 -2.73 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.75 7.57 -51.93 -0.39 0.36 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.17 8.14 -51.92 -0.42 -0.25 16 36 H 0.40 1.36 8.02 -40.82 -0.33 1.03 16 37 H 0.07 0.39 7.45 -51.93 -0.39 0.00 16 38 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 39 H 0.07 0.24 7.56 -51.93 -0.39 -0.15 16 40 H 0.35 3.97 8.46 -39.30 -0.33 3.63 16 41 H 0.04 0.36 7.38 -51.93 -0.38 -0.02 16 42 H 0.08 0.69 8.00 -51.93 -0.42 0.28 16 43 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 45 H 0.13 2.06 6.30 -52.49 -0.33 1.73 16 46 H 0.05 1.04 7.66 -51.93 -0.40 0.65 16 47 H 0.05 1.06 7.66 -51.93 -0.40 0.67 16 48 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 420.42 15.07 6.34 6.34 Total: -1.00 -33.69 420.42 -9.95 -43.64 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -8.78 Total: 1.39 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -2.22 Total: -15.42 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.16 Total: -38.21 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.11 Total: -14.14 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.69 -9.95 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414543211.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.398 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds