Wall clock time and date at job start Tue Mar 31 2020 18:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 N 1.46496 * 109.46844 * 120.00293 * 2 1 3 5 5 C 1.34777 * 120.00266 * 85.00291 * 4 2 1 6 6 O 1.21274 * 120.00135 * 0.27234 * 5 4 2 7 7 C 1.50706 * 119.99766 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.46740 * 59.99879 * 7 5 4 9 9 C 1.52997 * 109.47238 * 299.99577 * 7 5 4 10 10 N 1.46902 * 109.46577 * 179.97438 * 7 5 4 11 11 C 1.46911 * 110.99614 * 205.00147 * 10 7 5 12 12 C 1.50700 * 109.46831 * 179.97438 * 11 10 7 13 13 C 1.38288 * 119.97128 * 269.72400 * 12 11 10 14 14 C 1.38244 * 120.10790 * 179.73080 * 13 12 11 15 15 C 1.38166 * 120.05784 * 0.54497 * 14 13 12 16 16 C 1.38713 * 119.94124 * 359.72758 * 15 14 13 17 17 O 1.35902 * 120.05492 * 179.97438 * 16 15 14 18 18 C 1.42903 * 116.99857 * 0.02562 * 17 16 15 19 19 C 1.52999 * 109.47168 * 180.02562 * 18 17 16 20 20 C 1.50693 * 109.47517 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99926 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00259 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00274 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99968 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47107 * 60.00149 * 24 22 20 26 26 H 1.48496 * 109.47289 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47176 * 299.99917 * 24 22 20 28 28 C 1.38119 * 119.97017 * 89.99896 * 12 11 10 29 29 H 1.09002 * 109.47121 * 60.00062 * 1 2 3 30 30 H 1.09001 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47516 * 299.99745 * 1 2 3 32 32 H 1.09002 * 109.46901 * 239.99834 * 2 1 3 33 33 H 1.08997 * 109.47162 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46987 * 300.00020 * 3 2 1 35 35 H 1.09007 * 109.46959 * 59.99745 * 3 2 1 36 36 H 0.96999 * 119.99691 * 264.99277 * 4 2 1 37 37 H 1.09002 * 109.47153 * 180.02562 * 9 7 5 38 38 H 1.08996 * 109.46952 * 300.00294 * 9 7 5 39 39 H 1.09001 * 109.46832 * 60.00314 * 9 7 5 40 40 H 1.00892 * 111.00195 * 81.05248 * 10 7 5 41 41 H 1.09000 * 109.46786 * 299.99838 * 11 10 7 42 42 H 1.09000 * 109.46923 * 59.99884 * 11 10 7 43 43 H 1.07995 * 119.94536 * 359.97438 * 13 12 11 44 44 H 1.07999 * 119.97590 * 180.25478 * 14 13 12 45 45 H 1.07997 * 120.03151 * 179.74987 * 15 14 13 46 46 H 1.08991 * 109.47416 * 300.00242 * 18 17 16 47 47 H 1.09000 * 109.46749 * 60.00615 * 18 17 16 48 48 H 1.09000 * 109.47257 * 300.00946 * 19 18 17 49 49 H 1.09007 * 109.47054 * 59.99950 * 19 18 17 50 50 H 0.96999 * 120.00456 * 180.02562 * 23 22 20 51 51 H 1.08000 * 120.03060 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1470 -2.0323 1.1943 6 8 1.8634 -2.6673 0.2008 7 6 2.6498 -2.7426 2.4247 8 1 1.9775 -2.5436 3.2593 9 6 4.0525 -2.2372 2.7679 10 7 2.6986 -4.1885 2.1696 11 6 2.5970 -4.9479 3.4231 12 6 2.6499 -6.4235 3.1221 13 6 1.4808 -7.1217 2.8807 14 6 1.5265 -8.4743 2.5988 15 6 2.7399 -9.1343 2.5687 16 6 3.9135 -8.4374 2.8160 17 8 5.1082 -9.0845 2.7875 18 6 5.0817 -10.4831 2.4955 19 6 6.5091 -11.0339 2.5082 20 6 6.4813 -12.5086 2.1997 21 1 5.5397 -13.0036 2.0128 22 6 7.6578 -13.2261 2.1559 23 7 8.8043 -12.6237 2.3839 24 14 7.6233 -15.0541 1.7728 25 1 7.0229 -15.2675 0.4314 26 1 9.0087 -15.5887 1.7851 27 1 6.8110 -15.7592 2.7965 28 6 3.8654 -7.0787 3.0932 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.2490 -0.1824 1.9894 37 1 4.4164 -2.7513 3.6575 38 1 4.7247 -2.4361 1.9333 39 1 4.0159 -1.1644 2.9572 40 1 3.5342 -4.4382 1.6623 41 1 3.4262 -4.6803 4.0781 42 1 1.6539 -4.7114 3.9157 43 1 0.5310 -6.6086 2.9085 44 1 0.6125 -9.0166 2.4065 45 1 2.7747 -10.1919 2.3524 46 1 4.4865 -11.0002 3.2481 47 1 4.6399 -10.6405 1.5116 48 1 7.1048 -10.5168 1.7559 49 1 6.9506 -10.8764 3.4923 50 1 9.6321 -13.1284 2.3528 51 1 4.7778 -6.5339 3.2858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414543211.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:13 Heat of formation + Delta-G solvation = -90.500841 kcal Electronic energy + Delta-G solvation = -27504.747272 eV Core-core repulsion = 23595.628132 eV Total energy + Delta-G solvation = -3909.119140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.15110 -40.86565 -38.90771 -37.39299 -36.59469 -35.47609 -33.52755 -32.58964 -32.11487 -30.69976 -29.82397 -28.08375 -27.12000 -26.32476 -24.91270 -23.46672 -23.32295 -22.03727 -21.60168 -21.19668 -19.24759 -18.36116 -17.82734 -17.32995 -17.04378 -16.94590 -16.84666 -16.53236 -16.35221 -15.80574 -15.55086 -15.28383 -15.00049 -14.77936 -14.35025 -14.33080 -14.29970 -13.98976 -13.88010 -13.63675 -13.34188 -13.14737 -13.06342 -13.01749 -12.96238 -12.86954 -12.56612 -12.56108 -12.43622 -12.32270 -12.25131 -11.89903 -11.87148 -11.59520 -11.58436 -11.40317 -10.71410 -10.62302 -10.04286 -9.87239 -9.32113 -9.09106 -8.27351 -6.41366 0.33282 0.54532 1.40285 1.44378 1.52335 1.74798 2.15983 2.26899 2.50839 2.78963 3.06836 3.39356 3.78047 3.80494 3.91151 4.00314 4.06602 4.11154 4.16925 4.20776 4.23346 4.25318 4.34234 4.36192 4.45369 4.56901 4.63825 4.72096 4.72648 4.74815 4.75221 4.77975 4.85383 4.94445 5.05649 5.11774 5.19409 5.27572 5.30277 5.33600 5.42385 5.45392 5.52400 5.62327 5.64264 5.67506 5.87277 5.97116 6.07146 6.26205 6.56526 6.69608 6.72856 7.28733 7.40789 8.85454 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021290 B = 0.001651 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.881126 B =16955.906527 C =17405.689123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 C -0.151 4.151 4 N -0.716 5.716 5 C 0.513 3.487 6 O -0.571 6.571 7 C 0.072 3.928 8 H 0.129 0.871 9 C -0.175 4.175 10 N -0.680 5.680 11 C 0.110 3.890 12 C -0.047 4.047 13 C -0.141 4.141 14 C -0.082 4.082 15 C -0.223 4.223 16 C 0.105 3.895 17 O -0.341 6.341 18 C 0.085 3.915 19 C 0.029 3.971 20 C -0.550 4.550 21 H 0.070 0.930 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.976 3.024 25 H -0.265 1.265 26 H -0.281 1.281 27 H -0.263 1.263 28 C -0.161 4.161 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.414 0.586 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.344 0.656 41 H 0.057 0.943 42 H 0.102 0.898 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.125 0.875 46 H 0.060 0.940 47 H 0.057 0.943 48 H -0.002 1.002 49 H 0.000 1.000 50 H 0.267 0.733 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.072 30.373 2.649 35.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.027 3.973 3 C -0.209 4.209 4 N -0.371 5.371 5 C 0.299 3.701 6 O -0.449 6.449 7 C -0.041 4.041 8 H 0.147 0.853 9 C -0.234 4.234 10 N -0.311 5.311 11 C -0.017 4.017 12 C -0.047 4.047 13 C -0.160 4.160 14 C -0.100 4.100 15 C -0.242 4.242 16 C 0.060 3.940 17 O -0.255 6.255 18 C 0.011 3.989 19 C -0.008 4.008 20 C -0.587 4.587 21 H 0.088 0.912 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.800 3.200 25 H -0.190 1.190 26 H -0.206 1.206 27 H -0.188 1.188 28 C -0.180 4.180 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.162 0.838 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.143 0.857 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.016 0.984 49 H 0.018 0.982 50 H 0.076 0.924 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.567 29.934 1.836 35.273 hybrid contribution 1.433 -1.077 0.204 1.804 sum -17.133 28.857 2.040 33.622 Atomic orbital electron populations 1.22138 0.95163 1.01142 1.03257 1.20949 0.94307 0.94005 0.87998 1.22015 1.01710 0.93047 1.04125 1.46044 1.67392 1.06269 1.17375 1.21081 0.76751 0.82572 0.89700 1.90703 1.50744 1.66968 1.36461 1.21540 0.99008 0.88038 0.95508 0.85336 1.22431 0.94664 1.03795 1.02508 1.60109 1.46663 1.03493 1.20871 1.20914 1.03175 0.87147 0.90509 1.19691 0.91589 0.96011 0.97440 1.21173 0.98705 0.93940 1.02155 1.21230 0.97054 0.95017 0.96653 1.21493 0.92996 1.01107 1.08568 1.19500 0.84930 0.93115 0.96498 1.86074 1.28894 1.24950 1.85632 1.22843 0.99957 0.76777 0.99359 1.18956 0.90545 0.95250 0.96069 1.21374 0.94024 0.93809 1.49520 0.91196 1.26035 0.94762 1.04337 0.94451 1.70109 0.98582 1.38614 1.49562 0.85333 0.77463 0.77911 0.79335 1.18964 1.20647 1.18781 1.20454 0.99196 0.91258 1.07126 0.90708 0.94940 0.90977 0.92426 0.91896 0.90255 0.90347 0.74895 0.90471 0.93159 0.88976 0.83769 0.92455 0.88023 0.83755 0.83451 0.85670 0.92219 0.92514 0.98403 0.98204 0.92420 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.48 71.98 0.68 -1.18 16 2 C 0.13 1.57 3.19 44.99 0.14 1.72 16 3 C -0.15 -0.81 9.38 71.98 0.68 -0.14 16 4 N -0.72 -7.89 4.97 -442.55 -2.20 -10.09 16 5 C 0.51 9.44 7.19 87.66 0.63 10.07 16 6 O -0.57 -16.94 16.09 -3.01 -0.05 -16.99 16 7 C 0.07 0.95 3.00 44.17 0.13 1.08 16 8 H 0.13 1.04 7.80 -2.39 -0.02 1.02 16 9 C -0.17 -1.58 9.06 71.98 0.65 -0.93 16 10 N -0.68 -13.19 5.73 -499.43 -2.86 -16.05 16 11 C 0.11 1.87 5.61 85.56 0.48 2.35 16 12 C -0.05 -1.14 5.39 -19.88 -0.11 -1.24 16 13 C -0.14 -3.35 9.70 22.28 0.22 -3.13 16 14 C -0.08 -2.12 10.04 22.25 0.22 -1.90 16 15 C -0.22 -7.23 9.04 22.37 0.20 -7.03 16 16 C 0.10 3.83 6.69 22.51 0.15 3.99 16 17 O -0.34 -15.01 10.14 -92.45 -0.94 -15.95 16 18 C 0.09 3.87 4.68 71.98 0.34 4.21 16 19 C 0.03 1.62 5.34 29.85 0.16 1.78 16 20 C -0.55 -31.64 9.11 25.60 0.23 -31.40 16 21 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 22 C 0.00 0.17 5.46 84.66 0.46 0.63 16 23 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 24 Si 0.98 44.02 29.54 68.60 2.03 46.05 16 25 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 27 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 28 C -0.16 -4.90 9.64 22.36 0.22 -4.68 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 1.04 7.57 -2.39 -0.02 1.03 16 33 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.08 0.17 8.14 -2.38 -0.02 0.15 16 36 H 0.41 1.63 8.02 -92.71 -0.74 0.89 16 37 H 0.08 0.64 7.45 -2.39 -0.02 0.62 16 38 H 0.05 0.64 8.13 -2.39 -0.02 0.62 16 39 H 0.09 0.35 7.56 -2.39 -0.02 0.33 16 40 H 0.34 7.67 8.46 -89.70 -0.76 6.92 16 41 H 0.06 0.82 7.38 -2.39 -0.02 0.80 16 42 H 0.10 1.34 8.00 -2.39 -0.02 1.32 16 43 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 44 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 45 H 0.13 4.05 6.30 -2.91 -0.02 4.03 16 46 H 0.06 2.56 7.66 -2.39 -0.02 2.54 16 47 H 0.06 2.47 7.66 -2.39 -0.02 2.45 16 48 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 49 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 50 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 51 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -77.31 420.42 1.17 -76.14 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.58 Total: 19.54 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 5.49 Total: -25.82 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -4.77 Total: -82.98 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.99 Total: -32.94 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -77.31 1.17 -76.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414543211.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.359 kcal (2) G-P(sol) polarization free energy of solvation -77.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds