Wall clock time and date at job start Tue Mar 31 2020 18:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 N 1.46506 * 109.46858 * 119.99842 * 2 1 3 5 5 C 1.34773 * 119.99747 * 85.00129 * 4 2 1 6 6 O 1.21285 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00006 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47084 * 300.00149 * 7 5 4 9 9 C 1.52998 * 109.46905 * 59.99696 * 7 5 4 10 10 N 1.46900 * 109.47329 * 179.97438 * 7 5 4 11 11 C 1.46896 * 111.00195 * 154.99818 * 10 7 5 12 12 C 1.50697 * 109.47382 * 179.97438 * 11 10 7 13 13 C 1.38284 * 119.97210 * 269.97968 * 12 11 10 14 14 C 1.38250 * 120.10839 * 180.02562 * 13 12 11 15 15 C 1.38161 * 120.05581 * 359.68103 * 14 13 12 16 16 C 1.38710 * 119.94432 * 0.61525 * 15 14 13 17 17 O 1.35900 * 120.05544 * 179.67631 * 16 15 14 18 18 C 1.42898 * 117.00172 * 359.72769 * 17 16 15 19 19 C 1.52997 * 109.47319 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46616 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47104 * 119.99966 * 24 22 20 27 27 H 1.48489 * 109.47200 * 240.00246 * 24 22 20 28 28 C 1.38129 * 119.97079 * 90.00085 * 12 11 10 29 29 H 1.09003 * 109.46612 * 60.00031 * 1 2 3 30 30 H 1.08992 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46757 * 300.00179 * 1 2 3 32 32 H 1.09002 * 109.47236 * 240.00047 * 2 1 3 33 33 H 1.08997 * 109.47183 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47292 * 299.99587 * 3 2 1 35 35 H 1.09002 * 109.46985 * 59.99893 * 3 2 1 36 36 H 0.96995 * 120.00223 * 264.99609 * 4 2 1 37 37 H 1.09001 * 109.46880 * 60.00328 * 9 7 5 38 38 H 1.09003 * 109.47273 * 179.97438 * 9 7 5 39 39 H 1.08994 * 109.47265 * 300.00391 * 9 7 5 40 40 H 1.00903 * 110.99490 * 31.04520 * 10 7 5 41 41 H 1.09005 * 109.46944 * 59.99947 * 11 10 7 42 42 H 1.09002 * 109.47398 * 300.00389 * 11 10 7 43 43 H 1.07994 * 119.94418 * 0.02562 * 13 12 11 44 44 H 1.08002 * 119.97138 * 179.97438 * 14 13 12 45 45 H 1.08006 * 120.02996 * 180.29325 * 15 14 13 46 46 H 1.09002 * 109.47259 * 300.00149 * 18 17 16 47 47 H 1.09001 * 109.47074 * 60.00171 * 18 17 16 48 48 H 1.09002 * 109.47153 * 300.00307 * 19 18 17 49 49 H 1.08998 * 109.47533 * 59.99936 * 19 18 17 50 50 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 51 51 H 1.07999 * 120.02419 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -2.0322 1.1944 6 8 1.8581 -2.6678 0.2027 7 6 2.6498 -2.7426 2.4247 8 1 3.6491 -2.3825 2.6693 9 6 1.7063 -2.4633 3.5963 10 7 2.6985 -4.1885 2.1698 11 6 3.6855 -4.8433 3.0386 12 6 3.7066 -6.3221 2.7495 13 6 2.8705 -7.1744 3.4471 14 6 2.8879 -8.5316 3.1845 15 6 3.7365 -9.0389 2.2194 16 6 4.5806 -8.1868 1.5226 17 8 5.4209 -8.6842 0.5774 18 6 5.3867 -10.0957 0.3570 19 6 6.3927 -10.4659 -0.7347 20 6 6.3563 -11.9543 -0.9677 21 1 5.6826 -12.5742 -0.3947 22 6 7.1821 -12.5246 -1.9130 23 7 8.0021 -11.7697 -2.6111 24 14 7.1374 -14.3697 -2.2013 25 1 6.1374 -14.9882 -1.2943 26 1 6.7606 -14.6414 -3.6118 27 1 8.4782 -14.9461 -1.9273 28 6 4.5615 -6.8251 1.7882 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.2490 -0.1823 1.9895 37 1 0.7069 -2.8234 3.3517 38 1 2.0696 -2.9775 4.4861 39 1 1.6697 -1.3905 3.7856 40 1 2.8906 -4.3779 1.1975 41 1 3.4152 -4.6813 4.0821 42 1 4.6727 -4.4216 2.8494 43 1 2.2028 -6.7792 4.1983 44 1 2.2342 -9.1954 3.7310 45 1 3.7464 -10.0986 2.0113 46 1 5.6450 -10.6140 1.2804 47 1 4.3854 -10.3902 0.0428 48 1 6.1341 -9.9475 -1.6581 49 1 7.3942 -10.1713 -0.4211 50 1 8.5829 -12.1709 -3.2765 51 1 5.2143 -6.1590 1.2436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414543213.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:21 Heat of formation + Delta-G solvation = -69.531869 kcal Electronic energy + Delta-G solvation = -27560.370216 eV Core-core repulsion = 23652.160360 eV Total energy + Delta-G solvation = -3908.209857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.43859 -39.73832 -37.66910 -36.64146 -35.75522 -33.37232 -32.79276 -31.41228 -30.76481 -29.41811 -28.99644 -27.68829 -25.93601 -24.95243 -23.86671 -22.25720 -21.67742 -21.43881 -20.49033 -20.15362 -18.08727 -17.19216 -16.90370 -16.20287 -15.99402 -15.59678 -15.54197 -15.33066 -15.21232 -14.93219 -14.55881 -14.44866 -14.22692 -13.81658 -13.35222 -13.18628 -13.02037 -12.81722 -12.74013 -12.65112 -12.59227 -12.41416 -12.31107 -12.21401 -11.83795 -11.74034 -11.42364 -11.34300 -11.28147 -11.23181 -10.87214 -10.68019 -10.43249 -10.03388 -9.82920 -9.63728 -9.51926 -9.26651 -8.86060 -8.58294 -8.43608 -7.79253 -6.08922 -4.13382 1.46178 1.74096 2.29700 2.70248 3.27807 3.34749 3.38564 3.75552 3.88646 4.19363 4.23761 4.42459 4.44870 4.58337 4.69119 4.71623 4.77835 4.84978 5.01930 5.09965 5.17519 5.21321 5.22656 5.27570 5.31571 5.31932 5.39010 5.46403 5.48753 5.53401 5.63793 5.69907 5.80259 5.82950 5.85680 6.06561 6.09163 6.09861 6.21737 6.58132 6.59798 6.60402 6.75272 6.76882 7.02728 7.05849 7.19611 7.53176 7.66216 7.83637 7.86628 8.09479 8.25833 8.92464 9.50894 11.02724 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.001786 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.578870 B =15676.569689 C =16945.660670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 C -0.160 4.160 4 N -0.727 5.727 5 C 0.513 3.487 6 O -0.525 6.525 7 C 0.065 3.935 8 H 0.070 0.930 9 C -0.136 4.136 10 N -0.667 5.667 11 C 0.103 3.897 12 C -0.052 4.052 13 C -0.147 4.147 14 C -0.082 4.082 15 C -0.209 4.209 16 C 0.145 3.855 17 O -0.316 6.316 18 C 0.065 3.935 19 C 0.024 3.976 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.060 3.940 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.154 4.154 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.360 0.640 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.129 0.871 46 H 0.050 0.950 47 H 0.051 0.949 48 H 0.028 0.972 49 H 0.027 0.973 50 H 0.263 0.737 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.546 26.891 14.243 33.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 C -0.218 4.218 4 N -0.380 5.380 5 C 0.298 3.702 6 O -0.399 6.399 7 C -0.048 4.048 8 H 0.088 0.912 9 C -0.194 4.194 10 N -0.303 5.303 11 C -0.025 4.025 12 C -0.053 4.053 13 C -0.166 4.166 14 C -0.100 4.100 15 C -0.228 4.228 16 C 0.098 3.902 17 O -0.229 6.229 18 C -0.009 4.009 19 C -0.013 4.013 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.528 5.528 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.174 4.174 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.183 0.817 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.147 0.853 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.046 0.954 50 H 0.072 0.928 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.998 26.377 13.619 32.820 hybrid contribution 0.848 -0.712 -0.204 1.126 sum -13.150 25.665 13.415 31.806 Atomic orbital electron populations 1.22181 0.95144 1.02834 1.02029 1.20961 0.94321 0.92803 0.88874 1.22076 1.01754 0.94983 1.02984 1.46088 1.68167 1.06906 1.16862 1.20705 0.77602 0.82330 0.89535 1.90743 1.48879 1.65589 1.34721 1.21499 0.99573 0.89894 0.93821 0.91203 1.21750 1.00122 1.00807 0.96693 1.60484 1.51693 1.06342 1.11806 1.20913 0.93334 0.90347 0.97923 1.19313 0.95778 0.94305 0.95858 1.20740 1.00653 0.93056 1.02155 1.20892 0.97437 0.95236 0.96458 1.21397 1.00371 1.00467 1.00578 1.19133 0.89570 0.92796 0.88709 1.86169 1.56810 1.27514 1.52457 1.23322 1.01498 0.75493 1.00552 1.19131 0.93494 0.96414 0.92224 1.21016 1.22502 0.91717 1.21144 0.92295 1.24998 0.95134 0.98503 0.95614 1.69992 1.23666 1.35315 1.23793 0.86425 0.77940 0.84875 0.78119 1.19630 1.20840 1.20849 1.20274 1.03012 0.92907 1.01169 0.91615 0.91910 0.92524 0.89348 0.91941 0.90827 0.92070 0.76667 0.91268 0.91315 0.92294 0.81714 0.89955 0.94135 0.86350 0.86165 0.85273 0.93151 0.93119 0.95379 0.95414 0.92778 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.48 37.16 0.35 -0.69 16 2 C 0.13 0.87 3.18 -67.93 -0.22 0.65 16 3 C -0.16 -0.61 9.38 37.16 0.35 -0.26 16 4 N -0.73 -4.59 4.97 -53.80 -0.27 -4.86 16 5 C 0.51 4.92 7.15 -10.99 -0.08 4.84 16 6 O -0.52 -7.40 15.31 5.55 0.09 -7.31 16 7 C 0.07 0.52 3.03 -68.86 -0.21 0.31 16 8 H 0.07 0.44 7.80 -51.93 -0.41 0.04 16 9 C -0.14 -0.81 9.31 37.16 0.35 -0.46 16 10 N -0.67 -7.16 6.17 -109.22 -0.67 -7.84 16 11 C 0.10 1.04 5.61 -4.98 -0.03 1.01 16 12 C -0.05 -0.68 5.39 -104.65 -0.56 -1.25 16 13 C -0.15 -1.88 9.70 -39.56 -0.38 -2.26 16 14 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 15 C -0.21 -3.41 9.04 -39.44 -0.36 -3.76 16 16 C 0.14 2.63 6.69 -39.22 -0.26 2.37 16 17 O -0.32 -6.75 10.14 -19.43 -0.20 -6.94 16 18 C 0.07 1.44 4.68 37.16 0.17 1.62 16 19 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 20 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 21 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 24 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C -0.15 -2.42 9.64 -39.43 -0.38 -2.80 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.77 7.58 -51.93 -0.39 0.37 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.40 1.38 8.02 -40.82 -0.33 1.05 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.38 7.45 -51.93 -0.39 -0.01 16 39 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 40 H 0.36 4.68 7.44 -39.29 -0.29 4.38 16 41 H 0.08 0.69 7.38 -51.93 -0.38 0.30 16 42 H 0.04 0.38 8.00 -51.93 -0.42 -0.03 16 43 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.13 2.07 6.30 -52.48 -0.33 1.74 16 46 H 0.05 1.05 7.67 -51.93 -0.40 0.66 16 47 H 0.05 1.07 7.65 -51.93 -0.40 0.68 16 48 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 419.31 15.07 6.32 6.32 Total: -1.00 -33.46 419.31 -9.97 -43.43 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.74 Total: 2.05 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.21 Total: -15.30 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.21 Total: -38.76 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.11 Total: -14.25 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.46 -9.97 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414543213.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.102 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds