Wall clock time and date at job start Tue Mar 31 2020 18:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 N 1.46506 * 109.46858 * 119.99842 * 2 1 3 5 5 C 1.34773 * 119.99747 * 85.00129 * 4 2 1 6 6 O 1.21285 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00006 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47084 * 300.00149 * 7 5 4 9 9 C 1.52998 * 109.46905 * 59.99696 * 7 5 4 10 10 N 1.46900 * 109.47329 * 179.97438 * 7 5 4 11 11 C 1.46896 * 111.00195 * 154.99818 * 10 7 5 12 12 C 1.50697 * 109.47382 * 179.97438 * 11 10 7 13 13 C 1.38284 * 119.97210 * 269.97968 * 12 11 10 14 14 C 1.38250 * 120.10839 * 180.02562 * 13 12 11 15 15 C 1.38161 * 120.05581 * 359.68103 * 14 13 12 16 16 C 1.38710 * 119.94432 * 0.61525 * 15 14 13 17 17 O 1.35900 * 120.05544 * 179.67631 * 16 15 14 18 18 C 1.42898 * 117.00172 * 359.72769 * 17 16 15 19 19 C 1.52997 * 109.47319 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46616 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47104 * 119.99966 * 24 22 20 27 27 H 1.48489 * 109.47200 * 240.00246 * 24 22 20 28 28 C 1.38129 * 119.97079 * 90.00085 * 12 11 10 29 29 H 1.09003 * 109.46612 * 60.00031 * 1 2 3 30 30 H 1.08992 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46757 * 300.00179 * 1 2 3 32 32 H 1.09002 * 109.47236 * 240.00047 * 2 1 3 33 33 H 1.08997 * 109.47183 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47292 * 299.99587 * 3 2 1 35 35 H 1.09002 * 109.46985 * 59.99893 * 3 2 1 36 36 H 0.96995 * 120.00223 * 264.99609 * 4 2 1 37 37 H 1.09001 * 109.46880 * 60.00328 * 9 7 5 38 38 H 1.09003 * 109.47273 * 179.97438 * 9 7 5 39 39 H 1.08994 * 109.47265 * 300.00391 * 9 7 5 40 40 H 1.00903 * 110.99490 * 31.04520 * 10 7 5 41 41 H 1.09005 * 109.46944 * 59.99947 * 11 10 7 42 42 H 1.09002 * 109.47398 * 300.00389 * 11 10 7 43 43 H 1.07994 * 119.94418 * 0.02562 * 13 12 11 44 44 H 1.08002 * 119.97138 * 179.97438 * 14 13 12 45 45 H 1.08006 * 120.02996 * 180.29325 * 15 14 13 46 46 H 1.09002 * 109.47259 * 300.00149 * 18 17 16 47 47 H 1.09001 * 109.47074 * 60.00171 * 18 17 16 48 48 H 1.09002 * 109.47153 * 300.00307 * 19 18 17 49 49 H 1.08998 * 109.47533 * 59.99936 * 19 18 17 50 50 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 51 51 H 1.07999 * 120.02419 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -2.0322 1.1944 6 8 1.8581 -2.6678 0.2027 7 6 2.6498 -2.7426 2.4247 8 1 3.6491 -2.3825 2.6693 9 6 1.7063 -2.4633 3.5963 10 7 2.6985 -4.1885 2.1698 11 6 3.6855 -4.8433 3.0386 12 6 3.7066 -6.3221 2.7495 13 6 2.8705 -7.1744 3.4471 14 6 2.8879 -8.5316 3.1845 15 6 3.7365 -9.0389 2.2194 16 6 4.5806 -8.1868 1.5226 17 8 5.4209 -8.6842 0.5774 18 6 5.3867 -10.0957 0.3570 19 6 6.3927 -10.4659 -0.7347 20 6 6.3563 -11.9543 -0.9677 21 1 5.6826 -12.5742 -0.3947 22 6 7.1821 -12.5246 -1.9130 23 7 8.0021 -11.7697 -2.6111 24 14 7.1374 -14.3697 -2.2013 25 1 6.1374 -14.9882 -1.2943 26 1 6.7606 -14.6414 -3.6118 27 1 8.4782 -14.9461 -1.9273 28 6 4.5615 -6.8251 1.7882 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.2490 -0.1823 1.9895 37 1 0.7069 -2.8234 3.3517 38 1 2.0696 -2.9775 4.4861 39 1 1.6697 -1.3905 3.7856 40 1 2.8906 -4.3779 1.1975 41 1 3.4152 -4.6813 4.0821 42 1 4.6727 -4.4216 2.8494 43 1 2.2028 -6.7792 4.1983 44 1 2.2342 -9.1954 3.7310 45 1 3.7464 -10.0986 2.0113 46 1 5.6450 -10.6140 1.2804 47 1 4.3854 -10.3902 0.0428 48 1 6.1341 -9.9475 -1.6581 49 1 7.3942 -10.1713 -0.4211 50 1 8.5829 -12.1709 -3.2765 51 1 5.2143 -6.1590 1.2436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414543213.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:18 Heat of formation + Delta-G solvation = -92.043457 kcal Electronic energy + Delta-G solvation = -27561.346392 eV Core-core repulsion = 23652.160360 eV Total energy + Delta-G solvation = -3909.186032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.23332 -40.97363 -38.89655 -37.39307 -36.58717 -35.48556 -33.58619 -32.59941 -32.15373 -30.69728 -29.97541 -28.11182 -27.15488 -26.50601 -24.69312 -23.46793 -23.31085 -22.03025 -21.55912 -21.15112 -19.29714 -18.46375 -17.91485 -17.57619 -17.02992 -16.95711 -16.84833 -16.53030 -16.36608 -15.95975 -15.64302 -15.41032 -14.99829 -14.60153 -14.38863 -14.35898 -14.26256 -14.15587 -13.87075 -13.44058 -13.26882 -13.24680 -13.09550 -13.06233 -12.95491 -12.77939 -12.59822 -12.56772 -12.46130 -12.31541 -12.21741 -11.93198 -11.85777 -11.60761 -11.57324 -11.38517 -10.79838 -10.64897 -10.16198 -9.88838 -9.44335 -9.09554 -8.28695 -6.42688 0.32717 0.54416 1.39533 1.40914 1.54491 1.57801 2.10149 2.26078 2.50018 2.76324 3.05627 3.31946 3.67936 3.80915 3.90707 3.95359 4.12322 4.12805 4.15042 4.19872 4.24196 4.24938 4.30636 4.37938 4.46412 4.56227 4.62257 4.71095 4.72348 4.74131 4.78510 4.85879 4.91352 4.94723 5.02317 5.10664 5.24708 5.29434 5.30791 5.35412 5.42212 5.43706 5.52203 5.52838 5.63435 5.66788 5.87399 5.96403 6.05979 6.19989 6.55889 6.56162 6.72184 7.23642 7.27553 8.84786 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.001786 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.578870 B =15676.569689 C =16945.660670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.130 3.870 3 C -0.151 4.151 4 N -0.710 5.710 5 C 0.507 3.493 6 O -0.580 6.580 7 C 0.067 3.933 8 H 0.093 0.907 9 C -0.130 4.130 10 N -0.680 5.680 11 C 0.107 3.893 12 C -0.047 4.047 13 C -0.137 4.137 14 C -0.080 4.080 15 C -0.222 4.222 16 C 0.104 3.896 17 O -0.344 6.344 18 C 0.085 3.915 19 C 0.028 3.972 20 C -0.546 4.546 21 H 0.071 0.929 22 C 0.000 4.000 23 N -0.931 5.931 24 Si 0.979 3.021 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.275 1.275 28 C -0.166 4.166 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.417 0.583 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.343 0.657 41 H 0.111 0.889 42 H 0.047 0.953 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.126 0.874 46 H 0.061 0.939 47 H 0.057 0.943 48 H -0.004 1.004 49 H -0.001 1.001 50 H 0.267 0.733 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.088 27.992 17.217 36.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.209 4.209 4 N -0.363 5.363 5 C 0.294 3.706 6 O -0.459 6.459 7 C -0.046 4.046 8 H 0.111 0.889 9 C -0.188 4.188 10 N -0.315 5.315 11 C -0.020 4.020 12 C -0.048 4.048 13 C -0.156 4.156 14 C -0.098 4.098 15 C -0.241 4.241 16 C 0.059 3.941 17 O -0.258 6.258 18 C 0.011 3.989 19 C -0.010 4.010 20 C -0.584 4.584 21 H 0.089 0.911 22 C -0.198 4.198 23 N -0.571 5.571 24 Si 0.802 3.198 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.201 1.201 28 C -0.185 4.185 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.254 0.746 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.163 0.837 41 H 0.129 0.871 42 H 0.065 0.935 43 H 0.170 0.830 44 H 0.169 0.831 45 H 0.144 0.856 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.015 0.985 49 H 0.017 0.983 50 H 0.076 0.924 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.553 27.542 16.656 35.748 hybrid contribution 1.265 -0.860 -1.067 1.865 sum -14.288 26.682 15.590 34.046 Atomic orbital electron populations 1.22133 0.94962 1.01165 1.03406 1.21009 0.94479 0.94140 0.87801 1.22016 1.01721 0.92879 1.04279 1.45982 1.66745 1.06054 1.17522 1.21127 0.76965 0.83137 0.89388 1.90723 1.51518 1.66883 1.36752 1.21642 1.01210 0.88155 0.93576 0.88922 1.21758 0.98387 1.02820 0.95832 1.60534 1.51816 1.08349 1.10752 1.20972 0.93834 0.88087 0.99153 1.19688 0.94404 0.96338 0.94364 1.21197 0.99943 0.92605 1.01817 1.21270 0.96742 0.96323 0.95442 1.21507 1.00944 1.00201 1.01465 1.19493 0.90885 0.94113 0.89624 1.86076 1.58693 1.26549 1.54496 1.22848 1.00115 0.76725 0.99224 1.18975 0.93356 0.96161 0.92476 1.21429 1.22930 0.92431 1.21609 0.91079 1.26077 0.94418 1.04253 0.95075 1.70136 1.24532 1.37898 1.24488 0.85199 0.78464 0.77871 0.78290 1.18092 1.20242 1.20073 1.20454 1.03940 0.91992 1.02159 0.90635 0.95003 0.90766 0.92379 0.91897 0.90164 0.90146 0.74591 0.93099 0.90112 0.89481 0.83682 0.87132 0.93505 0.82978 0.83067 0.85596 0.92086 0.92449 0.98527 0.98258 0.92418 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.48 71.98 0.68 -1.25 16 2 C 0.13 1.61 3.18 44.99 0.14 1.75 16 3 C -0.15 -0.86 9.38 71.98 0.68 -0.18 16 4 N -0.71 -8.07 4.97 -442.51 -2.20 -10.27 16 5 C 0.51 9.57 7.15 87.66 0.63 10.20 16 6 O -0.58 -17.25 15.31 -3.05 -0.05 -17.30 16 7 C 0.07 0.93 3.03 44.17 0.13 1.07 16 8 H 0.09 0.90 7.80 -2.39 -0.02 0.88 16 9 C -0.13 -1.14 9.31 71.98 0.67 -0.47 16 10 N -0.68 -13.82 6.17 -499.47 -3.08 -16.90 16 11 C 0.11 1.91 5.61 85.56 0.48 2.39 16 12 C -0.05 -1.18 5.39 -19.88 -0.11 -1.28 16 13 C -0.14 -3.10 9.70 22.28 0.22 -2.88 16 14 C -0.08 -2.01 10.04 22.25 0.22 -1.78 16 15 C -0.22 -7.22 9.04 22.36 0.20 -7.02 16 16 C 0.10 3.91 6.69 22.50 0.15 4.06 16 17 O -0.34 -15.58 10.14 -92.43 -0.94 -16.52 16 18 C 0.09 3.94 4.68 71.98 0.34 4.28 16 19 C 0.03 1.57 5.34 29.85 0.16 1.72 16 20 C -0.55 -31.74 9.11 25.60 0.23 -31.51 16 21 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 22 C 0.00 0.01 5.46 84.65 0.46 0.47 16 23 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 24 Si 0.98 44.43 29.54 68.60 2.03 46.45 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 28 C -0.17 -5.34 9.64 22.37 0.22 -5.13 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 1.09 7.58 -2.39 -0.02 1.07 16 33 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.08 0.38 8.14 -2.39 -0.02 0.37 16 35 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.42 1.70 8.02 -92.71 -0.74 0.96 16 37 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.55 7.45 -2.39 -0.02 0.53 16 39 H 0.09 0.27 7.56 -2.39 -0.02 0.25 16 40 H 0.34 9.12 7.44 -89.69 -0.67 8.45 16 41 H 0.11 1.37 7.38 -2.38 -0.02 1.35 16 42 H 0.05 0.78 8.00 -2.39 -0.02 0.77 16 43 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 44 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 45 H 0.13 4.06 6.30 -2.91 -0.02 4.05 16 46 H 0.06 2.64 7.67 -2.39 -0.02 2.62 16 47 H 0.06 2.53 7.65 -2.39 -0.02 2.51 16 48 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 49 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 50 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 51 H 0.12 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -77.96 419.31 1.06 -76.90 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -0.49 Total: 20.79 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 5.50 Total: -25.55 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -5.00 Total: -84.77 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.98 Total: -33.82 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -77.96 1.06 -76.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414543213.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.143 kcal (2) G-P(sol) polarization free energy of solvation -77.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds