Wall clock time and date at job start Tue Mar 31 2020 17:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47320 * 2 1 4 4 C 1.53004 * 109.47053 * 240.00545 * 2 1 3 5 5 N 1.46503 * 109.47029 * 64.99920 * 4 2 1 6 6 C 1.34776 * 119.99595 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00544 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99681 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.46783 * 319.99626 * 8 6 5 10 10 N 1.46904 * 109.46984 * 199.99959 * 8 6 5 11 11 C 1.53000 * 109.47167 * 79.99549 * 8 6 5 12 12 C 1.53007 * 109.46829 * 184.99906 * 11 8 6 13 13 C 1.50696 * 109.46899 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99920 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00029 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00245 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00378 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47117 * 89.99836 * 17 15 13 19 19 H 1.48502 * 109.47114 * 210.00598 * 17 15 13 20 20 H 1.48508 * 109.46731 * 330.00168 * 17 15 13 21 21 C 1.52991 * 109.47363 * 120.00713 * 2 1 3 22 22 O 1.42903 * 109.47131 * 294.99829 * 21 2 1 23 23 C 1.42899 * 114.00342 * 180.02562 * 22 21 2 24 24 C 1.50701 * 109.47103 * 180.02562 * 23 22 21 25 25 C 1.38235 * 119.99808 * 89.99842 * 24 23 22 26 26 C 1.38243 * 119.99602 * 179.97438 * 25 24 23 27 27 C 1.38231 * 120.00070 * 0.07188 * 26 25 24 28 28 C 1.38234 * 119.99892 * 359.90902 * 27 26 25 29 29 C 1.38230 * 119.99865 * 269.97588 * 24 23 22 30 30 H 1.08995 * 109.47041 * 59.99239 * 1 2 3 31 31 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47089 * 299.99689 * 1 2 3 33 33 H 1.09000 * 109.47444 * 185.00157 * 4 2 1 34 34 H 1.09005 * 109.46939 * 305.00347 * 4 2 1 35 35 H 0.96999 * 120.00141 * 0.02562 * 5 4 2 36 36 H 1.00908 * 110.99291 * 299.99423 * 10 8 6 37 37 H 1.00891 * 111.00282 * 63.94641 * 10 8 6 38 38 H 1.08993 * 109.47107 * 305.00042 * 11 8 6 39 39 H 1.08995 * 109.47011 * 65.00217 * 11 8 6 40 40 H 1.09002 * 109.47280 * 300.00095 * 12 11 8 41 41 H 1.09004 * 109.46836 * 60.00183 * 12 11 8 42 42 H 0.96995 * 120.00292 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.47303 * 175.00037 * 21 2 1 44 44 H 1.08994 * 109.47466 * 54.99493 * 21 2 1 45 45 H 1.08993 * 109.47528 * 59.99500 * 23 22 21 46 46 H 1.09001 * 109.46686 * 299.99411 * 23 22 21 47 47 H 1.08000 * 120.00616 * 359.70324 * 25 24 23 48 48 H 1.08001 * 119.99556 * 179.97438 * 26 25 24 49 49 H 1.07997 * 119.99633 * 179.97438 * 27 26 25 50 50 H 1.07999 * 119.99751 * 180.02562 * 28 27 26 51 51 H 1.08001 * 120.00371 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0356 -2.4424 6 6 1.9955 -0.4133 -3.6660 7 8 2.6256 -1.4434 -3.7795 8 6 1.5973 0.3654 -4.8933 9 1 0.5851 0.7496 -4.7672 10 7 1.6441 -0.5150 -6.0684 11 6 2.5651 1.5337 -5.0923 12 6 2.0895 2.3960 -6.2634 13 6 3.0423 3.5470 -6.4590 14 1 3.9014 3.6526 -5.8130 15 6 2.8180 4.4645 -7.4633 16 7 1.7722 4.3356 -8.2503 17 14 3.9995 5.8910 -7.7064 18 1 5.0718 5.4899 -8.6521 19 1 3.2622 7.0557 -8.2588 20 1 4.6035 6.2612 -6.4012 21 6 2.0401 -0.7213 1.2491 22 8 1.6621 0.0165 2.4130 23 6 2.0925 -0.5741 3.6409 24 6 1.6413 0.2825 4.7958 25 6 0.4119 0.0557 5.3856 26 6 -0.0018 0.8412 6.4453 27 6 0.8134 1.8544 6.9141 28 6 2.0429 2.0809 6.3244 29 6 2.4570 1.2948 5.2654 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7994 -1.2057 34 1 1.6053 -1.7197 -1.2954 35 1 1.1489 0.8597 -2.3517 36 1 2.5730 -0.8841 -6.2067 37 1 0.9673 -1.2590 -5.9899 38 1 2.5967 2.1377 -4.1856 39 1 3.5615 1.1475 -5.3066 40 1 2.0579 1.7918 -7.1701 41 1 1.0930 2.7821 -6.0490 42 1 1.6142 4.9813 -8.9566 43 1 3.1264 -0.7996 1.2054 44 1 1.6055 -1.7198 1.2950 45 1 3.1798 -0.6490 3.6467 46 1 1.6592 -1.5698 3.7366 47 1 -0.2274 -0.7324 5.0158 48 1 -0.9625 0.6642 6.9059 49 1 0.4900 2.4683 7.7417 50 1 2.6800 2.8723 6.6909 51 1 3.4175 1.4721 4.8046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424099434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:03 Heat of formation + Delta-G solvation = -106.050823 kcal Electronic energy + Delta-G solvation = -27318.301742 eV Core-core repulsion = 23408.508304 eV Total energy + Delta-G solvation = -3909.793437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.08288 -40.31385 -39.04880 -37.23272 -36.63001 -34.79862 -34.02874 -32.55869 -31.91016 -31.80226 -28.64121 -27.87315 -27.27069 -26.18318 -24.72044 -23.49365 -22.31152 -22.29204 -21.60232 -20.95289 -18.67846 -18.06018 -17.97325 -17.71931 -17.14036 -17.06081 -16.80576 -16.42910 -16.34111 -16.23146 -15.67202 -15.33973 -15.06058 -14.98152 -14.75862 -14.28529 -14.26691 -14.04423 -13.80321 -13.74646 -13.57116 -13.41893 -13.25974 -12.96895 -12.80343 -12.51277 -12.25115 -12.19137 -12.09101 -11.89347 -11.87525 -11.75196 -11.70345 -11.62663 -11.24127 -10.98816 -10.60063 -10.48085 -10.13848 -9.83684 -9.77804 -9.61058 -8.13006 -6.23118 0.32446 0.48556 1.42117 1.43309 1.51696 1.54374 2.09083 2.45075 2.62608 3.11102 3.19935 3.59256 3.75531 3.79025 3.82458 3.90810 3.95144 4.10913 4.12901 4.16588 4.28364 4.32334 4.33829 4.40750 4.42457 4.46897 4.57520 4.64770 4.72091 4.75675 4.79721 4.86662 4.95541 4.99495 5.06902 5.14129 5.17611 5.26984 5.33941 5.42199 5.53751 5.58302 5.60287 5.65088 5.85935 5.99979 6.08093 6.11375 6.20183 6.31536 6.45265 6.55217 6.95647 7.14428 7.44849 8.98073 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012117 B = 0.001766 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.324141 B =15848.453701 C =17487.224496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.083 0.917 4 C 0.128 3.872 5 N -0.714 5.714 6 C 0.489 3.511 7 O -0.583 6.583 8 C 0.085 3.915 9 H 0.111 0.889 10 N -0.819 5.819 11 C -0.082 4.082 12 C 0.038 3.962 13 C -0.544 4.544 14 H 0.055 0.945 15 C 0.001 3.999 16 N -0.929 5.929 17 Si 0.959 3.041 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.264 1.264 21 C 0.070 3.930 22 O -0.395 6.395 23 C 0.101 3.899 24 C -0.107 4.107 25 C -0.112 4.112 26 C -0.132 4.132 27 C -0.123 4.123 28 C -0.133 4.133 29 C -0.115 4.115 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.413 0.587 36 H 0.345 0.655 37 H 0.347 0.653 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.006 0.994 41 H -0.005 1.005 42 H 0.262 0.738 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.132 0.868 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.139 0.861 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 -10.678 32.027 33.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.101 0.899 4 C 0.004 3.996 5 N -0.366 5.366 6 C 0.275 3.725 7 O -0.463 6.463 8 C -0.031 4.031 9 H 0.128 0.872 10 N -0.348 5.348 11 C -0.120 4.120 12 C 0.001 3.999 13 C -0.582 4.582 14 H 0.074 0.926 15 C -0.197 4.197 16 N -0.569 5.569 17 Si 0.784 3.216 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.188 1.188 21 C -0.007 4.007 22 O -0.315 6.315 23 C 0.025 3.975 24 C -0.107 4.107 25 C -0.130 4.130 26 C -0.150 4.150 27 C -0.141 4.141 28 C -0.151 4.151 29 C -0.133 4.133 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.024 0.976 41 H 0.013 0.987 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.150 0.850 48 H 0.159 0.841 49 H 0.160 0.840 50 H 0.157 0.843 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.433 -10.520 31.383 33.277 hybrid contribution 0.718 0.148 0.212 0.763 sum -2.715 -10.372 31.595 33.364 Atomic orbital electron populations 1.21764 0.93501 1.02370 1.02233 1.21202 0.97594 1.00593 0.91780 0.89887 1.21262 0.99742 0.95314 0.83321 1.46028 1.57354 1.28027 1.05232 1.22326 0.78260 0.85469 0.86474 1.90635 1.41755 1.26521 1.87411 1.21637 1.02040 0.93710 0.85677 0.87156 1.58975 1.12094 1.25832 1.37916 1.21390 0.96745 0.94076 0.99830 1.18841 0.94621 0.92899 0.93545 1.21739 1.10500 1.10602 1.15331 0.92637 1.25900 0.97130 1.00926 0.95702 1.70104 1.29382 1.37583 1.19853 0.85542 0.78797 0.78631 0.78613 1.20192 1.20756 1.18833 1.22429 0.99223 0.94897 0.84163 1.87921 1.79020 1.50836 1.13741 1.21395 0.99092 0.95185 0.81795 1.19804 0.95823 0.98136 0.96963 1.21309 0.95302 1.00139 0.96245 1.21473 1.00735 0.95803 0.96986 1.21544 0.94347 0.97871 1.00310 1.21460 0.97241 0.99978 0.96455 1.21307 1.00273 0.94802 0.96895 0.92262 0.92193 0.92021 0.92114 0.91344 0.74983 0.84154 0.84014 0.91447 0.93931 0.97567 0.98676 0.92959 0.92274 0.91725 0.91596 0.91230 0.85015 0.84075 0.84029 0.84317 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.96 71.98 0.65 -1.51 16 2 C -0.09 -1.47 2.66 -10.79 -0.03 -1.50 16 3 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 4 C 0.13 2.48 5.06 86.38 0.44 2.92 16 5 N -0.71 -16.27 5.28 -463.04 -2.45 -18.72 16 6 C 0.49 14.69 7.07 87.66 0.62 15.31 16 7 O -0.58 -20.86 16.25 -3.03 -0.05 -20.91 16 8 C 0.09 2.79 3.15 44.17 0.14 2.93 16 9 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 10 N -0.82 -27.62 8.44 -171.79 -1.45 -29.07 16 11 C -0.08 -3.29 4.78 30.60 0.15 -3.14 16 12 C 0.04 1.98 4.86 29.85 0.15 2.13 16 13 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 14 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 17 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 21 C 0.07 1.00 5.32 71.98 0.38 1.38 16 22 O -0.40 -6.88 9.86 -148.98 -1.47 -8.35 16 23 C 0.10 1.39 6.06 71.24 0.43 1.82 16 24 C -0.11 -1.67 5.51 -19.87 -0.11 -1.78 16 25 C -0.11 -1.58 9.70 22.27 0.22 -1.37 16 26 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 27 C -0.12 -1.48 10.05 22.27 0.22 -1.25 16 28 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 29 C -0.11 -1.73 9.70 22.27 0.22 -1.51 16 30 H 0.06 0.88 7.18 -2.39 -0.02 0.87 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.02 7.82 -2.39 -0.02 1.00 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.41 7.97 7.66 -92.71 -0.71 7.26 16 36 H 0.34 11.93 8.58 -89.69 -0.77 11.16 16 37 H 0.35 9.98 9.06 -89.70 -0.81 9.17 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 41 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 46 H 0.07 0.75 8.08 -2.39 -0.02 0.74 16 47 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 48 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 49 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 50 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 51 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -72.07 423.52 0.13 -71.93 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -1.37 Total: 33.65 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 4.61 Total: -18.70 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -3.61 Total: -104.26 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.52 Total: -29.26 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -72.07 0.13 -71.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424099434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.119 kcal (2) G-P(sol) polarization free energy of solvation -72.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds