Wall clock time and date at job start Tue Mar 31 2020 18:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47256 * 2 1 4 4 C 1.46762 * 110.99701 * 299.96602 * 3 2 1 5 5 C 1.53425 * 108.59197 * 184.95005 * 4 3 2 6 6 H 1.09001 * 109.81897 * 303.61385 * 5 4 3 7 7 C 1.52998 * 109.77328 * 182.84812 * 5 4 3 8 8 N 1.46904 * 109.47037 * 180.72957 * 7 5 4 9 9 C 1.46901 * 110.99608 * 159.86843 * 8 7 5 10 10 C 1.46897 * 110.99679 * 283.81955 * 8 7 5 11 11 C 1.53000 * 109.46830 * 163.27846 * 10 8 7 12 12 O 1.42899 * 109.47361 * 64.19859 * 11 10 8 13 13 C 1.42904 * 113.99976 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.46888 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00358 * 0.02562 * 14 13 12 16 16 C 1.37887 * 119.99646 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00120 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99833 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47277 * 89.99817 * 18 16 14 20 20 H 1.48498 * 109.47434 * 210.00239 * 18 16 14 21 21 H 1.48507 * 109.47361 * 330.00137 * 18 16 14 22 22 O 1.43135 * 107.90860 * 63.24197 * 5 4 3 23 23 C 1.36155 * 116.67765 * 314.66115 * 22 5 4 24 24 C 1.38777 * 118.75453 * 194.97221 * 23 22 5 25 25 C 1.38179 * 120.20407 * 180.22422 * 24 23 22 26 26 C 1.38252 * 120.03270 * 0.02562 * 25 24 23 27 27 C 1.38070 * 120.11536 * 359.90522 * 26 25 24 28 28 C 1.38969 * 121.37395 * 15.02303 * 23 22 5 29 29 H 1.08992 * 109.47715 * 66.33944 * 1 2 3 30 30 H 1.09000 * 109.47028 * 186.34894 * 1 2 3 31 31 H 1.09003 * 109.46389 * 306.33992 * 1 2 3 32 32 H 1.09006 * 109.46595 * 240.00121 * 2 1 3 33 33 H 1.08998 * 109.47701 * 120.00595 * 2 1 3 34 34 H 1.09000 * 109.61709 * 65.21780 * 4 3 2 35 35 H 1.08999 * 109.61959 * 304.67467 * 4 3 2 36 36 H 1.08994 * 109.47613 * 60.72480 * 7 5 4 37 37 H 1.09002 * 109.46689 * 300.72658 * 7 5 4 38 38 H 1.09004 * 109.46551 * 191.39380 * 9 8 7 39 39 H 1.08999 * 109.47250 * 311.38788 * 9 8 7 40 40 H 1.08993 * 109.47407 * 71.39280 * 9 8 7 41 41 H 1.09002 * 109.47361 * 43.27675 * 10 8 7 42 42 H 1.08999 * 109.47001 * 283.27461 * 10 8 7 43 43 H 1.09000 * 109.46963 * 184.19722 * 11 10 8 44 44 H 1.09003 * 109.46728 * 304.19303 * 11 10 8 45 45 H 1.09000 * 109.46884 * 299.99450 * 13 12 11 46 46 H 1.09001 * 109.47190 * 59.99409 * 13 12 11 47 47 H 0.97001 * 120.00377 * 180.02562 * 17 16 14 48 48 H 1.07997 * 119.89628 * 0.20925 * 24 23 22 49 49 H 1.08001 * 119.98177 * 180.02562 * 25 24 23 50 50 H 1.07997 * 119.94805 * 179.97438 * 26 25 24 51 51 H 1.07995 * 119.88284 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5498 2.1089 -1.1870 5 6 2.1910 3.5027 -1.1956 6 1 1.9575 4.0227 -0.2665 7 6 1.6641 4.3075 -2.3853 8 7 2.2951 5.6341 -2.3972 9 6 2.2048 6.2481 -3.7286 10 6 1.7048 6.5069 -1.3737 11 6 2.6304 7.6995 -1.1250 12 8 2.7197 8.4891 -2.3126 13 6 3.5654 9.6342 -2.1871 14 6 3.5859 10.3889 -3.4913 15 1 3.0103 10.0302 -4.3319 16 6 4.3386 11.5379 -3.6111 17 7 5.0382 11.9754 -2.5872 18 14 4.3635 12.4738 -5.2276 19 1 3.2747 13.4836 -5.2317 20 1 5.6728 13.1568 -5.3841 21 1 4.1627 11.5249 -6.3522 22 8 3.6075 3.3348 -1.3137 23 6 4.1792 2.3879 -0.5197 24 6 5.5575 2.3952 -0.3585 25 6 6.1695 1.4453 0.4367 26 6 5.4090 0.4830 1.0747 27 6 4.0370 0.4698 0.9206 28 6 3.4122 1.4242 0.1239 29 1 -0.3634 0.4124 -0.9412 30 1 -0.3633 -1.0214 0.1136 31 1 -0.3632 0.6090 0.8279 32 1 1.8932 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.4646 2.2055 -1.1510 35 1 1.8419 1.5663 -2.0861 36 1 0.5835 4.4200 -2.2980 37 1 1.9012 3.7841 -3.3116 38 1 2.8470 7.1280 -3.7672 39 1 2.5269 5.5298 -4.4826 40 1 1.1736 6.5421 -3.9240 41 1 1.5774 5.9464 -0.4476 42 1 0.7347 6.8656 -1.7177 43 1 2.2298 8.3074 -0.3138 44 1 3.6225 7.3388 -0.8530 45 1 3.1845 10.2824 -1.3978 46 1 4.5767 9.3134 -1.9373 47 1 5.5675 12.7840 -2.6713 48 1 6.1537 3.1456 -0.8564 49 1 7.2424 1.4546 0.5600 50 1 5.8887 -0.2591 1.6956 51 1 3.4466 -0.2834 1.4210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590154541.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:02 Heat of formation + Delta-G solvation = -36.743336 kcal Electronic energy + Delta-G solvation = -29256.700907 eV Core-core repulsion = 25349.912868 eV Total energy + Delta-G solvation = -3906.788039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.29180 -38.32267 -37.29241 -37.23643 -35.82452 -32.72225 -31.93583 -31.52652 -30.46110 -29.47438 -28.01325 -26.93995 -26.26062 -24.07601 -23.52445 -22.68691 -22.18927 -21.54607 -20.68156 -20.12140 -18.41900 -17.25751 -16.61743 -16.36215 -15.87576 -15.52872 -15.47335 -15.23089 -14.94230 -14.68511 -14.48093 -14.29697 -14.23763 -13.92145 -13.79616 -13.45615 -13.27397 -12.94679 -12.64546 -12.52732 -12.26328 -12.08849 -12.01545 -11.85597 -11.67182 -11.47938 -11.39259 -11.27824 -11.14223 -10.84305 -10.70729 -10.70186 -10.62636 -10.37195 -10.14124 -9.90300 -9.05018 -8.75315 -8.60469 -8.12695 -7.99534 -7.75702 -6.07700 -4.09255 1.17911 1.30766 3.05181 3.29482 3.31690 3.36816 3.41778 3.71967 3.96617 4.32740 4.37166 4.46573 4.60864 4.68350 4.75300 4.82494 4.91368 4.96187 5.00669 5.02710 5.12301 5.18801 5.26567 5.28779 5.30679 5.37811 5.40416 5.44949 5.52341 5.65387 5.70762 5.74881 5.80277 5.94121 5.97087 5.98580 6.10445 6.12904 6.18623 6.39616 6.43352 6.49780 6.63015 6.84274 6.89341 7.17842 7.31364 7.35194 7.46492 7.50404 7.81842 8.19736 8.62635 9.04153 9.55377 11.03847 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017464 B = 0.002334 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.909635 B =11995.415491 C =12982.431585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 N -0.486 5.486 4 C 0.018 3.982 5 C 0.097 3.903 6 H 0.081 0.919 7 C 0.060 3.940 8 N -0.526 5.526 9 C 0.025 3.975 10 C 0.059 3.941 11 C 0.068 3.932 12 O -0.391 6.391 13 C 0.195 3.805 14 C -0.513 4.513 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.272 1.272 22 O -0.286 6.286 23 C 0.096 3.904 24 C -0.123 4.123 25 C -0.112 4.112 26 C -0.133 4.133 27 C -0.128 4.128 28 C 0.036 3.964 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.047 0.953 45 H 0.002 0.998 46 H 0.006 0.994 47 H 0.263 0.737 48 H 0.134 0.866 49 H 0.127 0.873 50 H 0.122 0.878 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 -27.440 6.709 29.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.074 4.074 3 N -0.202 5.202 4 C -0.109 4.109 5 C 0.040 3.960 6 H 0.099 0.901 7 C -0.069 4.069 8 N -0.250 5.250 9 C -0.122 4.122 10 C -0.069 4.069 11 C -0.010 4.010 12 O -0.311 6.311 13 C 0.121 3.879 14 C -0.551 4.551 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.734 3.266 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 O -0.199 6.199 23 C 0.048 3.952 24 C -0.142 4.142 25 C -0.131 4.131 26 C -0.151 4.151 27 C -0.148 4.148 28 C -0.062 4.062 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.020 0.980 46 H 0.023 0.977 47 H 0.073 0.927 48 H 0.152 0.848 49 H 0.145 0.855 50 H 0.140 0.860 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.396 -27.029 6.926 28.626 hybrid contribution -0.528 0.347 -1.034 1.212 sum -6.924 -26.681 5.892 28.188 Atomic orbital electron populations 1.21866 0.94182 1.02393 1.02712 1.22299 0.96269 0.86873 1.01997 1.58877 1.07616 1.15447 1.38258 1.22837 1.01863 0.95182 0.91044 1.22681 0.79028 0.93894 1.00426 0.90072 1.22108 0.96189 0.91377 0.97248 1.61897 1.55431 1.01185 1.06484 1.22665 1.00912 1.01114 0.87539 1.22244 0.96253 0.93417 0.94984 1.22222 0.98385 0.91122 0.89285 1.87822 1.70276 1.40275 1.32747 1.20170 0.88521 0.81798 0.97462 1.21044 1.28241 1.08175 0.97622 0.91667 1.24949 0.95208 0.97143 0.97243 1.69961 1.30014 1.23404 1.30339 0.86365 0.77327 0.79739 0.83206 1.20562 1.21110 1.19653 1.86457 1.22263 1.52895 1.58318 1.18818 0.92476 0.90324 0.93541 1.20557 0.91639 1.00907 1.01139 1.20889 0.99889 0.94881 0.97455 1.20859 0.93321 0.99742 1.01216 1.20850 0.94873 0.98811 1.00312 1.18889 0.87969 0.97792 1.01513 0.92460 0.91609 0.91399 0.93742 0.89532 0.88159 0.92473 0.92692 0.90022 0.87180 0.92927 0.96146 0.90837 0.94177 0.94338 0.93512 0.97980 0.97654 0.92699 0.84787 0.85529 0.85993 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.48 37.16 0.35 -0.53 16 2 C 0.05 0.38 5.21 -3.82 -0.02 0.36 16 3 N -0.49 -4.88 4.68 -170.81 -0.80 -5.68 16 4 C 0.02 0.17 4.48 -3.68 -0.02 0.16 16 5 C 0.10 1.16 3.06 -26.51 -0.08 1.07 16 6 H 0.08 1.03 6.80 -51.93 -0.35 0.67 16 7 C 0.06 0.71 4.71 -3.82 -0.02 0.69 16 8 N -0.53 -8.17 4.53 -242.92 -1.10 -9.27 16 9 C 0.02 0.41 9.03 60.07 0.54 0.95 16 10 C 0.06 0.91 5.36 -3.83 -0.02 0.89 16 11 C 0.07 1.30 6.26 37.16 0.23 1.54 16 12 O -0.39 -9.27 7.29 -35.23 -0.26 -9.53 16 13 C 0.19 5.37 5.69 36.00 0.20 5.58 16 14 C -0.51 -15.05 9.43 -34.44 -0.32 -15.38 16 15 H 0.07 1.89 7.81 -52.48 -0.41 1.47 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 18 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 O -0.29 -4.18 9.95 -20.23 -0.20 -4.38 16 23 C 0.10 1.29 6.47 -39.11 -0.25 1.04 16 24 C -0.12 -1.52 9.94 -39.40 -0.39 -1.91 16 25 C -0.11 -1.14 10.04 -39.60 -0.40 -1.53 16 26 C -0.13 -1.24 10.03 -39.64 -0.40 -1.63 16 27 C -0.13 -1.27 9.07 -39.31 -0.36 -1.62 16 28 C 0.04 0.42 5.82 -83.59 -0.49 -0.07 16 29 H 0.06 0.32 6.88 -51.93 -0.36 -0.04 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.57 5.88 -51.93 -0.31 0.26 16 34 H 0.10 0.76 6.75 -51.93 -0.35 0.40 16 35 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 36 H 0.06 0.55 7.99 -51.93 -0.42 0.14 16 37 H 0.08 0.93 7.71 -51.93 -0.40 0.53 16 38 H 0.11 2.26 5.71 -51.93 -0.30 1.96 16 39 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 40 H 0.02 0.32 7.95 -51.93 -0.41 -0.09 16 41 H 0.07 0.98 6.56 -51.93 -0.34 0.64 16 42 H 0.04 0.62 7.91 -51.93 -0.41 0.20 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 46 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 49 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 50 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 51 H 0.13 0.98 5.93 -52.49 -0.31 0.67 16 LS Contribution 399.43 15.07 6.02 6.02 Total: -1.00 -32.62 399.43 -10.71 -43.32 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -8.55 Total: -2.11 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.53 Total: -8.89 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -1.16 Total: -41.36 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.46 Total: -13.91 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.62 -10.71 -43.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590154541.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.579 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds