Wall clock time and date at job start Tue Mar 31 2020 18:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47256 * 2 1 4 4 C 1.46762 * 110.99701 * 299.96602 * 3 2 1 5 5 C 1.53425 * 108.59197 * 184.95005 * 4 3 2 6 6 H 1.09001 * 109.81897 * 303.61385 * 5 4 3 7 7 C 1.52998 * 109.77328 * 182.84812 * 5 4 3 8 8 N 1.46904 * 109.47037 * 180.72957 * 7 5 4 9 9 C 1.46901 * 110.99608 * 159.86843 * 8 7 5 10 10 C 1.46897 * 110.99679 * 283.81955 * 8 7 5 11 11 C 1.53000 * 109.46830 * 163.27846 * 10 8 7 12 12 O 1.42899 * 109.47361 * 64.19859 * 11 10 8 13 13 C 1.42904 * 113.99976 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.46888 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00358 * 0.02562 * 14 13 12 16 16 C 1.37887 * 119.99646 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00120 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99833 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47277 * 89.99817 * 18 16 14 20 20 H 1.48498 * 109.47434 * 210.00239 * 18 16 14 21 21 H 1.48507 * 109.47361 * 330.00137 * 18 16 14 22 22 O 1.43135 * 107.90860 * 63.24197 * 5 4 3 23 23 C 1.36155 * 116.67765 * 314.66115 * 22 5 4 24 24 C 1.38777 * 118.75453 * 194.97221 * 23 22 5 25 25 C 1.38179 * 120.20407 * 180.22422 * 24 23 22 26 26 C 1.38252 * 120.03270 * 0.02562 * 25 24 23 27 27 C 1.38070 * 120.11536 * 359.90522 * 26 25 24 28 28 C 1.38969 * 121.37395 * 15.02303 * 23 22 5 29 29 H 1.08992 * 109.47715 * 66.33944 * 1 2 3 30 30 H 1.09000 * 109.47028 * 186.34894 * 1 2 3 31 31 H 1.09003 * 109.46389 * 306.33992 * 1 2 3 32 32 H 1.09006 * 109.46595 * 240.00121 * 2 1 3 33 33 H 1.08998 * 109.47701 * 120.00595 * 2 1 3 34 34 H 1.09000 * 109.61709 * 65.21780 * 4 3 2 35 35 H 1.08999 * 109.61959 * 304.67467 * 4 3 2 36 36 H 1.08994 * 109.47613 * 60.72480 * 7 5 4 37 37 H 1.09002 * 109.46689 * 300.72658 * 7 5 4 38 38 H 1.09004 * 109.46551 * 191.39380 * 9 8 7 39 39 H 1.08999 * 109.47250 * 311.38788 * 9 8 7 40 40 H 1.08993 * 109.47407 * 71.39280 * 9 8 7 41 41 H 1.09002 * 109.47361 * 43.27675 * 10 8 7 42 42 H 1.08999 * 109.47001 * 283.27461 * 10 8 7 43 43 H 1.09000 * 109.46963 * 184.19722 * 11 10 8 44 44 H 1.09003 * 109.46728 * 304.19303 * 11 10 8 45 45 H 1.09000 * 109.46884 * 299.99450 * 13 12 11 46 46 H 1.09001 * 109.47190 * 59.99409 * 13 12 11 47 47 H 0.97001 * 120.00377 * 180.02562 * 17 16 14 48 48 H 1.07997 * 119.89628 * 0.20925 * 24 23 22 49 49 H 1.08001 * 119.98177 * 180.02562 * 25 24 23 50 50 H 1.07997 * 119.94805 * 179.97438 * 26 25 24 51 51 H 1.07995 * 119.88284 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5498 2.1089 -1.1870 5 6 2.1910 3.5027 -1.1956 6 1 1.9575 4.0227 -0.2665 7 6 1.6641 4.3075 -2.3853 8 7 2.2951 5.6341 -2.3972 9 6 2.2048 6.2481 -3.7286 10 6 1.7048 6.5069 -1.3737 11 6 2.6304 7.6995 -1.1250 12 8 2.7197 8.4891 -2.3126 13 6 3.5654 9.6342 -2.1871 14 6 3.5859 10.3889 -3.4913 15 1 3.0103 10.0302 -4.3319 16 6 4.3386 11.5379 -3.6111 17 7 5.0382 11.9754 -2.5872 18 14 4.3635 12.4738 -5.2276 19 1 3.2747 13.4836 -5.2317 20 1 5.6728 13.1568 -5.3841 21 1 4.1627 11.5249 -6.3522 22 8 3.6075 3.3348 -1.3137 23 6 4.1792 2.3879 -0.5197 24 6 5.5575 2.3952 -0.3585 25 6 6.1695 1.4453 0.4367 26 6 5.4090 0.4830 1.0747 27 6 4.0370 0.4698 0.9206 28 6 3.4122 1.4242 0.1239 29 1 -0.3634 0.4124 -0.9412 30 1 -0.3633 -1.0214 0.1136 31 1 -0.3632 0.6090 0.8279 32 1 1.8932 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.4646 2.2055 -1.1510 35 1 1.8419 1.5663 -2.0861 36 1 0.5835 4.4200 -2.2980 37 1 1.9012 3.7841 -3.3116 38 1 2.8470 7.1280 -3.7672 39 1 2.5269 5.5298 -4.4826 40 1 1.1736 6.5421 -3.9240 41 1 1.5774 5.9464 -0.4476 42 1 0.7347 6.8656 -1.7177 43 1 2.2298 8.3074 -0.3138 44 1 3.6225 7.3388 -0.8530 45 1 3.1845 10.2824 -1.3978 46 1 4.5767 9.3134 -1.9373 47 1 5.5675 12.7840 -2.6713 48 1 6.1537 3.1456 -0.8564 49 1 7.2424 1.4546 0.5600 50 1 5.8887 -0.2591 1.6956 51 1 3.4466 -0.2834 1.4210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590154541.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:01 Heat of formation + Delta-G solvation = -58.056371 kcal Electronic energy + Delta-G solvation = -29257.625110 eV Core-core repulsion = 25349.912868 eV Total energy + Delta-G solvation = -3907.712242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.11661 -39.52515 -38.54062 -37.98690 -37.33314 -34.90293 -32.86702 -32.19676 -31.27508 -30.98581 -29.01639 -28.89848 -27.15946 -25.30899 -24.41300 -24.25134 -23.72748 -22.35980 -21.78830 -20.98558 -19.27643 -18.62688 -18.05742 -17.66794 -17.41195 -16.82287 -16.54189 -16.42377 -15.98556 -15.84269 -15.62041 -15.53253 -15.30147 -15.00225 -14.95670 -14.63509 -14.39313 -14.00710 -13.86134 -13.61043 -13.32714 -13.15369 -13.00587 -12.95569 -12.93390 -12.70108 -12.61277 -12.56905 -12.48162 -12.37101 -12.26972 -11.86432 -11.73326 -11.66887 -11.41101 -11.21591 -10.88325 -10.83801 -10.16482 -9.44314 -9.21818 -8.56643 -8.31341 -6.43566 0.37086 0.47174 1.39324 1.42508 1.54405 2.22828 2.34537 2.51682 2.87169 2.95237 3.02479 3.21611 3.53221 3.65006 3.79071 3.88214 4.06704 4.12911 4.18293 4.22597 4.26826 4.31710 4.36531 4.40714 4.45517 4.51652 4.53289 4.56246 4.58291 4.63683 4.68873 4.76961 4.83267 4.85059 4.89641 4.94722 5.00104 5.02125 5.18883 5.19478 5.28277 5.35680 5.45336 5.55401 5.61395 5.74233 5.90007 5.97118 6.05124 6.08366 6.20221 6.54340 6.56523 6.82864 7.28122 8.81265 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017464 B = 0.002334 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.909635 B =11995.415491 C =12982.431585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.493 5.493 4 C 0.026 3.974 5 C 0.095 3.905 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.547 5.547 9 C 0.034 3.966 10 C 0.070 3.930 11 C 0.059 3.941 12 O -0.393 6.393 13 C 0.210 3.790 14 C -0.542 4.542 15 H 0.064 0.936 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.984 3.016 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.263 1.263 22 O -0.316 6.316 23 C 0.064 3.936 24 C -0.147 4.147 25 C -0.116 4.116 26 C -0.128 4.128 27 C -0.131 4.131 28 C 0.028 3.972 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.100 0.900 42 H 0.048 0.952 43 H 0.047 0.953 44 H 0.032 0.968 45 H -0.017 1.017 46 H -0.022 1.022 47 H 0.270 0.730 48 H 0.121 0.879 49 H 0.147 0.853 50 H 0.153 0.847 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 -29.478 6.558 31.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 N -0.209 5.209 4 C -0.101 4.101 5 C 0.038 3.962 6 H 0.088 0.912 7 C -0.063 4.063 8 N -0.271 5.271 9 C -0.114 4.114 10 C -0.058 4.058 11 C -0.018 4.018 12 O -0.313 6.313 13 C 0.135 3.865 14 C -0.580 4.580 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.806 3.194 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.187 1.187 22 O -0.230 6.230 23 C 0.016 3.984 24 C -0.166 4.166 25 C -0.135 4.135 26 C -0.146 4.146 27 C -0.151 4.151 28 C -0.070 4.070 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.000 1.000 46 H -0.004 1.004 47 H 0.079 0.921 48 H 0.139 0.861 49 H 0.165 0.835 50 H 0.171 0.829 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.848 -29.101 6.791 30.896 hybrid contribution -0.047 0.872 -0.872 1.234 sum -7.896 -28.229 5.919 29.904 Atomic orbital electron populations 1.21847 0.92801 1.03398 1.02646 1.22421 0.97354 0.85382 1.02396 1.58950 1.06713 1.16968 1.38273 1.22799 1.02833 0.93522 0.90970 1.22729 0.78392 0.95324 0.99720 0.91165 1.22159 0.97422 0.89009 0.97713 1.61776 1.56897 1.02650 1.05800 1.22443 1.00225 0.99907 0.88785 1.22153 0.95104 0.92102 0.96408 1.22522 0.98895 0.92199 0.88200 1.87841 1.69156 1.39322 1.34956 1.19769 0.87597 0.82685 0.96478 1.21364 1.29194 1.09252 0.98149 0.91775 1.25997 0.94171 0.97850 1.01476 1.70081 1.30377 1.23993 1.32744 0.85178 0.77947 0.78247 0.78008 1.19222 1.20108 1.18742 1.86404 1.23682 1.53820 1.59133 1.19093 0.93077 0.91276 0.94926 1.20707 0.91740 1.01794 1.02349 1.21175 1.01112 0.94410 0.96766 1.21258 0.93251 0.99590 1.00505 1.21206 0.95465 0.98707 0.99740 1.19105 0.88853 0.97606 1.01455 0.92183 0.89993 0.91873 0.93842 0.88583 0.85804 0.92631 0.89941 0.89456 0.91621 0.91344 0.95463 0.88225 0.93426 0.93482 0.94973 0.99974 1.00422 0.92129 0.86090 0.83497 0.82923 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.48 71.98 0.68 -0.62 16 2 C 0.05 0.61 5.21 86.30 0.45 1.06 16 3 N -0.49 -9.12 4.68 -694.32 -3.25 -12.37 16 4 C 0.03 0.45 4.48 86.47 0.39 0.84 16 5 C 0.10 2.21 3.06 30.74 0.09 2.31 16 6 H 0.07 1.74 6.80 -2.39 -0.02 1.73 16 7 C 0.07 1.46 4.71 86.30 0.41 1.87 16 8 N -0.55 -16.97 4.53 -922.46 -4.18 -21.14 16 9 C 0.03 1.13 9.03 127.69 1.15 2.29 16 10 C 0.07 2.15 5.36 86.30 0.46 2.61 16 11 C 0.06 2.36 6.26 71.98 0.45 2.81 16 12 O -0.39 -19.46 7.29 -148.98 -1.09 -20.54 16 13 C 0.21 12.18 5.69 71.23 0.41 12.59 16 14 C -0.54 -32.77 9.43 25.60 0.24 -32.53 16 15 H 0.06 3.80 7.81 -2.91 -0.02 3.77 16 16 C 0.00 0.19 5.46 84.66 0.46 0.65 16 17 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 18 Si 0.98 45.13 29.54 68.60 2.03 47.15 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 22 O -0.32 -9.55 9.95 -95.32 -0.95 -10.49 16 23 C 0.06 1.75 6.47 22.57 0.15 1.90 16 24 C -0.15 -3.79 9.94 22.38 0.22 -3.57 16 25 C -0.12 -2.27 10.04 22.26 0.22 -2.05 16 26 C -0.13 -2.11 10.03 22.23 0.22 -1.89 16 27 C -0.13 -2.34 9.07 22.45 0.20 -2.14 16 28 C 0.03 0.63 5.82 38.25 0.22 0.85 16 29 H 0.06 0.49 6.88 -2.39 -0.02 0.48 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.10 0.98 5.88 -2.39 -0.01 0.97 16 34 H 0.12 1.52 6.75 -2.39 -0.02 1.51 16 35 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 36 H 0.08 1.42 7.99 -2.39 -0.02 1.40 16 37 H 0.09 1.87 7.71 -2.39 -0.02 1.85 16 38 H 0.07 2.81 5.71 -2.38 -0.01 2.79 16 39 H 0.07 2.00 7.79 -2.39 -0.02 1.98 16 40 H 0.03 0.84 7.95 -2.39 -0.02 0.82 16 41 H 0.10 2.54 6.56 -2.39 -0.02 2.52 16 42 H 0.05 1.40 7.91 -2.39 -0.02 1.38 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 45 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 46 H -0.02 -1.37 8.14 -2.39 -0.02 -1.38 16 47 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 48 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 49 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 50 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 51 H 0.15 1.87 5.93 -2.91 -0.02 1.85 16 Total: -1.00 -73.41 399.43 0.18 -73.22 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.90 Total: 14.42 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 6.44 Total: -13.03 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -7.14 Total: -90.72 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -2.03 Total: -31.04 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -73.41 0.18 -73.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590154541.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.167 kcal (2) G-P(sol) polarization free energy of solvation -73.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds