Wall clock time and date at job start Tue Mar 31 2020 18:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47397 * 2 1 4 4 C 1.46491 * 120.00539 * 270.00197 * 3 2 1 5 5 C 1.50702 * 109.47273 * 269.99932 * 4 3 2 6 6 H 1.07999 * 119.99664 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00034 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99475 * 179.97438 * 7 5 4 9 9 Si 1.86790 * 120.00307 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47284 * 89.99505 * 9 7 5 11 11 H 1.48500 * 109.47139 * 209.99792 * 9 7 5 12 12 H 1.48508 * 109.46964 * 329.99558 * 9 7 5 13 13 C 1.34780 * 119.99596 * 90.00012 * 3 2 1 14 14 O 1.21284 * 119.99859 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00427 * 0.02562 * 13 3 2 16 16 N 1.46894 * 109.47521 * 180.02562 * 15 13 3 17 17 C 1.46905 * 110.99852 * 293.95238 * 16 15 13 18 18 C 1.46905 * 111.00218 * 170.00119 * 16 15 13 19 19 H 1.09007 * 109.46456 * 311.14736 * 18 16 15 20 20 C 1.52999 * 109.47239 * 71.14993 * 18 16 15 21 21 O 1.42896 * 109.47025 * 66.72363 * 20 18 16 22 22 C 1.53000 * 109.46904 * 191.15163 * 18 16 15 23 23 C 1.50696 * 109.47143 * 64.99962 * 22 18 16 24 24 C 1.38239 * 119.99764 * 269.71797 * 23 22 18 25 25 C 1.38239 * 119.99720 * 180.32522 * 24 23 22 26 26 C 1.38236 * 120.00086 * 359.95116 * 25 24 23 27 27 C 1.38233 * 120.00065 * 0.02936 * 26 25 24 28 28 C 1.38232 * 119.99903 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46901 * 59.99546 * 1 2 3 30 30 H 1.08994 * 109.47597 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47310 * 300.00199 * 1 2 3 32 32 H 1.09000 * 109.47241 * 240.00341 * 2 1 3 33 33 H 1.09001 * 109.46901 * 120.00454 * 2 1 3 34 34 H 1.09004 * 109.47299 * 29.99783 * 4 3 2 35 35 H 1.08999 * 109.47960 * 149.99715 * 4 3 2 36 36 H 0.97006 * 119.99640 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47525 * 59.99531 * 15 13 3 38 38 H 1.09003 * 109.46876 * 300.00184 * 15 13 3 39 39 H 1.09000 * 109.46837 * 305.34274 * 17 16 15 40 40 H 1.08997 * 109.47079 * 65.34888 * 17 16 15 41 41 H 1.08997 * 109.47181 * 185.35018 * 17 16 15 42 42 H 1.08996 * 109.46740 * 186.72688 * 20 18 16 43 43 H 1.08997 * 109.47148 * 306.72201 * 20 18 16 44 44 H 0.96696 * 113.99756 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.47228 * 304.99323 * 22 18 16 46 46 H 1.09005 * 109.46803 * 184.99866 * 22 18 16 47 47 H 1.07999 * 119.99935 * 0.28626 * 24 23 22 48 48 H 1.07999 * 119.99472 * 179.97438 * 25 24 23 49 49 H 1.08001 * 119.99301 * 180.02562 * 26 25 24 50 50 H 1.07996 * 119.99936 * 179.97438 * 27 26 25 51 51 H 1.08000 * 119.99740 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1492 2.3898 -2.8778 8 7 5.3914 2.1835 -3.2572 9 14 3.0130 3.4354 -3.9290 10 1 3.1165 4.8557 -3.5077 11 1 3.4059 3.3123 -5.3557 12 1 1.6132 2.9694 -3.7591 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9924 1.3059 2.4724 16 7 2.3099 2.2060 3.5889 17 6 3.7465 2.5108 3.6273 18 6 1.8576 1.6397 4.8667 19 1 0.8245 1.3055 4.7706 20 6 2.7455 0.4511 5.2406 21 8 4.0684 0.9138 5.5194 22 6 1.9487 2.7076 5.9586 23 6 0.9824 3.8227 5.6524 24 6 1.3915 4.9027 4.8926 25 6 0.5070 5.9288 4.6174 26 6 -0.7868 5.8745 5.1011 27 6 -1.1960 4.7944 5.8606 28 6 -0.3115 3.7684 6.1358 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5818 1.6878 -2.0283 35 1 2.0956 3.1411 -1.1383 36 1 5.7175 2.5740 -4.0831 37 1 2.6228 0.4185 2.5299 38 1 0.9445 1.0113 2.5302 39 1 4.3144 1.5809 3.6565 40 1 4.0216 3.0769 2.7375 41 1 3.9692 3.1005 4.5165 42 1 2.3394 -0.0422 6.1236 43 1 2.7750 -0.2555 4.4111 44 1 4.6870 0.2122 5.7645 45 1 2.9630 3.1052 5.9942 46 1 1.6983 2.2642 6.9223 47 1 2.4023 4.9450 4.5145 48 1 0.8268 6.7727 4.0241 49 1 -1.4778 6.6761 4.8857 50 1 -2.2066 4.7522 6.2389 51 1 -0.6311 2.9247 6.7296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595596546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:47 Heat of formation + Delta-G solvation = -41.491417 kcal Electronic energy + Delta-G solvation = -30281.374278 eV Core-core repulsion = 26374.380346 eV Total energy + Delta-G solvation = -3906.993931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.94994 -39.02187 -38.07665 -35.69219 -35.12556 -33.00897 -32.60259 -30.73005 -30.34786 -29.72149 -28.60471 -27.02063 -25.93754 -24.41945 -22.94667 -22.41170 -22.12522 -21.30470 -19.68501 -18.28270 -17.75268 -16.94077 -16.84297 -16.49441 -15.80654 -15.43495 -15.23092 -15.12126 -14.79321 -14.48310 -14.29815 -13.96220 -13.46727 -13.36760 -13.24863 -13.20136 -12.91383 -12.63745 -12.44094 -12.38937 -12.29538 -11.93566 -11.84037 -11.69548 -11.57673 -11.35009 -11.20861 -11.08549 -10.92307 -10.83433 -10.63444 -10.56733 -10.46326 -10.13774 -9.99785 -9.50814 -8.90845 -8.74498 -8.56041 -8.50879 -7.91151 -7.63433 -6.06290 -4.04418 1.50423 1.58733 3.31301 3.37229 3.39667 3.45589 3.63062 3.92806 4.06552 4.33738 4.42357 4.69452 4.87015 4.94305 5.05224 5.12160 5.12648 5.16932 5.22321 5.27457 5.29173 5.30284 5.42565 5.46654 5.54894 5.59120 5.64777 5.66979 5.76537 5.81894 5.97104 5.98876 6.03353 6.16310 6.18918 6.21624 6.24232 6.41354 6.58286 6.66307 6.71923 6.75607 6.83671 6.99472 7.16694 7.22577 7.31755 7.42275 7.44719 7.65251 8.34885 8.50845 8.96484 9.11838 9.54852 11.07193 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.003494 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.510472 B = 8011.180858 C = 8814.517013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 N -0.597 5.597 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.511 3.489 14 O -0.520 6.520 15 C 0.037 3.963 16 N -0.507 5.507 17 C 0.025 3.975 18 C 0.091 3.909 19 H 0.090 0.910 20 C 0.043 3.957 21 O -0.557 6.557 22 C -0.066 4.066 23 C -0.068 4.068 24 C -0.082 4.082 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.126 4.126 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.371 0.629 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.123 0.877 48 H 0.118 0.882 49 H 0.114 0.886 50 H 0.114 0.886 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.404 -4.098 20.350 23.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.330 5.330 4 C 0.098 3.902 5 C -0.564 4.564 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.297 3.703 14 O -0.395 6.395 15 C -0.094 4.094 16 N -0.230 5.230 17 C -0.122 4.122 18 C -0.018 4.018 19 H 0.108 0.892 20 C -0.037 4.037 21 O -0.362 6.362 22 C -0.104 4.104 23 C -0.068 4.068 24 C -0.100 4.100 25 C -0.137 4.137 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.144 4.144 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.218 0.782 45 H 0.103 0.897 46 H 0.088 0.912 47 H 0.141 0.859 48 H 0.136 0.864 49 H 0.132 0.868 50 H 0.132 0.868 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.577 -2.403 19.958 23.198 hybrid contribution 0.085 -1.024 -0.553 1.166 sum -11.492 -3.426 19.405 22.812 Atomic orbital electron populations 1.22237 0.96851 1.01429 1.02293 1.21400 0.93335 0.84108 1.02812 1.47926 1.64789 1.13237 1.07005 1.19597 0.97107 0.93391 0.80129 1.21336 0.95398 1.32711 1.06995 0.90901 1.24851 0.94978 0.95816 0.97371 1.69905 1.15133 1.45133 1.23588 0.86852 0.81486 0.81667 0.79691 1.19908 1.21148 1.19104 1.20115 0.78506 0.87063 0.84616 1.90632 1.44408 1.17769 1.86731 1.22083 1.01731 0.94485 0.91117 1.61831 1.18840 1.42099 1.00246 1.22667 0.85597 1.00978 1.02987 1.21929 0.97634 0.92004 0.90267 0.89176 1.22948 0.84265 0.97485 0.99007 1.86748 1.20386 1.37812 1.91295 1.20553 0.99439 0.93744 0.96643 1.19711 0.94250 0.95487 0.97360 1.21061 1.00207 0.92772 0.95943 1.21173 0.93861 0.99098 0.99617 1.21069 0.96254 0.98459 0.98911 1.20997 0.99156 0.94736 0.99703 1.20947 0.93520 0.98710 1.01188 0.92208 0.92110 0.92974 0.89860 0.91793 0.95477 0.94639 0.92633 0.92730 0.89067 0.94347 0.89920 0.91694 0.93534 0.93607 0.78231 0.89679 0.91191 0.85864 0.86426 0.86763 0.86785 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.27 2.46 -175.07 -0.43 -12.70 16 4 C 0.22 5.39 4.23 -5.20 -0.02 5.37 16 5 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 9 Si 0.88 21.87 27.47 -169.99 -4.67 17.21 16 10 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.51 10.46 7.43 -10.99 -0.08 10.38 16 14 O -0.52 -12.81 13.88 5.55 0.08 -12.73 16 15 C 0.04 0.56 3.60 -4.98 -0.02 0.54 16 16 N -0.51 -7.36 3.83 -236.33 -0.91 -8.26 16 17 C 0.02 0.39 7.58 60.07 0.46 0.85 16 18 C 0.09 1.00 2.27 -67.71 -0.15 0.84 16 19 H 0.09 0.92 7.91 -51.92 -0.41 0.51 16 20 C 0.04 0.39 6.29 37.16 0.23 0.62 16 21 O -0.56 -5.36 9.26 -35.23 -0.33 -5.68 16 22 C -0.07 -0.71 4.47 -27.88 -0.12 -0.84 16 23 C -0.07 -0.83 4.95 -104.62 -0.52 -1.35 16 24 C -0.08 -1.13 9.32 -39.58 -0.37 -1.50 16 25 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 26 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 27 C -0.13 -1.41 10.05 -39.59 -0.40 -1.81 16 28 C -0.13 -1.39 9.70 -39.58 -0.38 -1.77 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 34 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 35 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.05 0.76 6.16 -51.93 -0.32 0.44 16 38 H 0.09 1.18 6.96 -51.93 -0.36 0.82 16 39 H 0.04 0.59 6.00 -51.93 -0.31 0.28 16 40 H 0.08 1.65 5.99 -51.93 -0.31 1.33 16 41 H 0.06 0.96 5.79 -51.93 -0.30 0.66 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 0.42 6.70 -51.93 -0.35 0.07 16 44 H 0.37 2.16 9.12 45.56 0.42 2.57 16 45 H 0.08 1.02 5.74 -51.93 -0.30 0.72 16 46 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 47 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 48 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 49 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 50 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 51 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -35.12 398.41 -9.23 -44.35 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.49 Total: 5.14 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.26 Total: -6.20 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.56 Total: -48.08 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.25 Total: -18.42 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.12 -9.23 -44.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595596546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.858 kcal (2) G-P(sol) polarization free energy of solvation -35.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds