Wall clock time and date at job start Tue Mar 31 2020 18:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47397 * 2 1 4 4 C 1.46491 * 120.00539 * 270.00197 * 3 2 1 5 5 C 1.50702 * 109.47273 * 269.99932 * 4 3 2 6 6 H 1.07999 * 119.99664 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00034 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99475 * 179.97438 * 7 5 4 9 9 Si 1.86790 * 120.00307 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47284 * 89.99505 * 9 7 5 11 11 H 1.48500 * 109.47139 * 209.99792 * 9 7 5 12 12 H 1.48508 * 109.46964 * 329.99558 * 9 7 5 13 13 C 1.34780 * 119.99596 * 90.00012 * 3 2 1 14 14 O 1.21284 * 119.99859 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00427 * 0.02562 * 13 3 2 16 16 N 1.46894 * 109.47521 * 180.02562 * 15 13 3 17 17 C 1.46905 * 110.99852 * 293.95238 * 16 15 13 18 18 C 1.46905 * 111.00218 * 170.00119 * 16 15 13 19 19 H 1.09007 * 109.46456 * 311.14736 * 18 16 15 20 20 C 1.52999 * 109.47239 * 71.14993 * 18 16 15 21 21 O 1.42896 * 109.47025 * 66.72363 * 20 18 16 22 22 C 1.53000 * 109.46904 * 191.15163 * 18 16 15 23 23 C 1.50696 * 109.47143 * 64.99962 * 22 18 16 24 24 C 1.38239 * 119.99764 * 269.71797 * 23 22 18 25 25 C 1.38239 * 119.99720 * 180.32522 * 24 23 22 26 26 C 1.38236 * 120.00086 * 359.95116 * 25 24 23 27 27 C 1.38233 * 120.00065 * 0.02936 * 26 25 24 28 28 C 1.38232 * 119.99903 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46901 * 59.99546 * 1 2 3 30 30 H 1.08994 * 109.47597 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47310 * 300.00199 * 1 2 3 32 32 H 1.09000 * 109.47241 * 240.00341 * 2 1 3 33 33 H 1.09001 * 109.46901 * 120.00454 * 2 1 3 34 34 H 1.09004 * 109.47299 * 29.99783 * 4 3 2 35 35 H 1.08999 * 109.47960 * 149.99715 * 4 3 2 36 36 H 0.97006 * 119.99640 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47525 * 59.99531 * 15 13 3 38 38 H 1.09003 * 109.46876 * 300.00184 * 15 13 3 39 39 H 1.09000 * 109.46837 * 305.34274 * 17 16 15 40 40 H 1.08997 * 109.47079 * 65.34888 * 17 16 15 41 41 H 1.08997 * 109.47181 * 185.35018 * 17 16 15 42 42 H 1.08996 * 109.46740 * 186.72688 * 20 18 16 43 43 H 1.08997 * 109.47148 * 306.72201 * 20 18 16 44 44 H 0.96696 * 113.99756 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.47228 * 304.99323 * 22 18 16 46 46 H 1.09005 * 109.46803 * 184.99866 * 22 18 16 47 47 H 1.07999 * 119.99935 * 0.28626 * 24 23 22 48 48 H 1.07999 * 119.99472 * 179.97438 * 25 24 23 49 49 H 1.08001 * 119.99301 * 180.02562 * 26 25 24 50 50 H 1.07996 * 119.99936 * 179.97438 * 27 26 25 51 51 H 1.08000 * 119.99740 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1492 2.3898 -2.8778 8 7 5.3914 2.1835 -3.2572 9 14 3.0130 3.4354 -3.9290 10 1 3.1165 4.8557 -3.5077 11 1 3.4059 3.3123 -5.3557 12 1 1.6132 2.9694 -3.7591 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9924 1.3059 2.4724 16 7 2.3099 2.2060 3.5889 17 6 3.7465 2.5108 3.6273 18 6 1.8576 1.6397 4.8667 19 1 0.8245 1.3055 4.7706 20 6 2.7455 0.4511 5.2406 21 8 4.0684 0.9138 5.5194 22 6 1.9487 2.7076 5.9586 23 6 0.9824 3.8227 5.6524 24 6 1.3915 4.9027 4.8926 25 6 0.5070 5.9288 4.6174 26 6 -0.7868 5.8745 5.1011 27 6 -1.1960 4.7944 5.8606 28 6 -0.3115 3.7684 6.1358 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5818 1.6878 -2.0283 35 1 2.0956 3.1411 -1.1383 36 1 5.7175 2.5740 -4.0831 37 1 2.6228 0.4185 2.5299 38 1 0.9445 1.0113 2.5302 39 1 4.3144 1.5809 3.6565 40 1 4.0216 3.0769 2.7375 41 1 3.9692 3.1005 4.5165 42 1 2.3394 -0.0422 6.1236 43 1 2.7750 -0.2555 4.4111 44 1 4.6870 0.2122 5.7645 45 1 2.9630 3.1052 5.9942 46 1 1.6983 2.2642 6.9223 47 1 2.4023 4.9450 4.5145 48 1 0.8268 6.7727 4.0241 49 1 -1.4778 6.6761 4.8857 50 1 -2.2066 4.7522 6.2389 51 1 -0.6311 2.9247 6.7296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595596546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:46 Heat of formation + Delta-G solvation = -66.371111 kcal Electronic energy + Delta-G solvation = -30282.453142 eV Core-core repulsion = 26374.380346 eV Total energy + Delta-G solvation = -3908.072796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.14810 -40.20857 -39.08190 -37.00678 -36.29700 -34.87166 -33.88879 -31.91433 -31.63159 -30.70461 -30.04478 -28.57353 -26.81815 -25.69719 -24.35693 -23.75012 -23.30625 -22.30539 -20.62626 -19.80496 -19.11023 -18.53543 -18.11482 -17.47356 -17.25445 -16.63495 -16.45575 -16.19025 -15.98899 -15.90826 -15.47449 -15.10237 -14.73056 -14.69585 -14.56541 -14.39399 -14.13588 -13.78751 -13.75765 -13.55524 -13.43651 -13.42428 -13.21190 -12.80724 -12.72945 -12.59772 -12.51177 -12.40399 -12.29699 -12.06625 -12.02787 -11.86816 -11.74845 -11.68263 -11.49597 -10.84202 -10.76879 -10.51390 -9.67421 -9.42618 -9.35565 -9.00149 -8.35253 -6.39431 0.59995 0.66220 1.29971 1.34605 1.42645 1.89243 2.24313 2.29472 2.99156 3.01368 3.03955 3.53741 3.72105 3.87912 4.07263 4.08859 4.15380 4.22200 4.26072 4.32031 4.35055 4.42617 4.45215 4.50122 4.59996 4.62629 4.64768 4.76799 4.77560 4.80272 4.85065 4.92731 4.95646 4.98481 5.00567 5.02083 5.13953 5.28826 5.31519 5.39470 5.41963 5.47258 5.69694 5.70181 5.76384 5.90224 6.05416 6.24181 6.26227 6.30796 6.61373 6.79934 6.94117 7.22092 7.54437 8.81799 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.003494 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.510472 B = 8011.180858 C = 8814.517013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.229 3.771 5 C -0.532 4.532 6 H 0.027 0.973 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.240 1.240 13 C 0.498 3.502 14 O -0.575 6.575 15 C 0.052 3.948 16 N -0.523 5.523 17 C 0.044 3.956 18 C 0.090 3.910 19 H 0.110 0.890 20 C 0.046 3.954 21 O -0.579 6.579 22 C -0.060 4.060 23 C -0.074 4.074 24 C -0.108 4.108 25 C -0.142 4.142 26 C -0.137 4.137 27 C -0.128 4.128 28 C -0.124 4.124 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.013 0.987 36 H 0.268 0.732 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.042 0.958 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.388 0.612 45 H 0.065 0.935 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.112 0.888 49 H 0.132 0.868 50 H 0.143 0.857 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.059 -6.203 22.251 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.107 3.893 5 C -0.571 4.571 6 H 0.046 0.954 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.163 1.163 13 C 0.286 3.714 14 O -0.454 6.454 15 C -0.079 4.079 16 N -0.246 5.246 17 C -0.103 4.103 18 C -0.018 4.018 19 H 0.127 0.873 20 C -0.033 4.033 21 O -0.387 6.387 22 C -0.098 4.098 23 C -0.074 4.074 24 C -0.126 4.126 25 C -0.161 4.161 26 C -0.155 4.155 27 C -0.146 4.146 28 C -0.142 4.142 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.237 0.763 45 H 0.084 0.916 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.130 0.870 49 H 0.149 0.851 50 H 0.161 0.839 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.255 -4.574 21.888 27.069 hybrid contribution 1.300 -0.395 -1.052 1.718 sum -13.955 -4.969 20.836 25.565 Atomic orbital electron populations 1.22151 0.93967 1.03612 1.02006 1.21738 0.95614 0.81222 1.03690 1.48064 1.64792 1.15132 1.05710 1.19204 0.94632 0.92780 0.82732 1.21558 0.97075 1.31898 1.06546 0.95417 1.25819 0.96670 0.97156 0.98954 1.70052 1.17334 1.46659 1.24510 0.85743 0.80501 0.78969 0.77901 1.20458 1.19791 1.16288 1.21218 0.77115 0.86755 0.86301 1.90615 1.46641 1.20433 1.87665 1.21998 1.03848 0.93942 0.88071 1.61712 1.17594 1.43305 1.02009 1.22344 0.87096 1.00347 1.00548 1.22069 0.98967 0.92729 0.88080 0.87251 1.22908 0.83751 0.96265 1.00404 1.86688 1.21222 1.39325 1.91450 1.20534 0.98038 0.93319 0.97884 1.19902 0.95373 0.95191 0.96927 1.21023 0.99404 0.94443 0.97711 1.21297 0.94977 0.99200 1.00577 1.21329 0.95697 0.99599 0.98914 1.21397 1.00510 0.94011 0.98678 1.21300 0.92624 0.99569 1.00660 0.93730 0.88607 0.92033 0.91167 0.88846 0.93702 0.96935 0.92308 0.91040 0.85813 0.93978 0.95131 0.91277 0.90487 0.93452 0.76278 0.91618 0.88400 0.88460 0.87005 0.85056 0.83914 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 10.24 71.98 0.74 -2.76 16 2 C 0.10 2.91 5.93 86.38 0.51 3.42 16 3 N -0.60 -24.98 2.46 -826.17 -2.03 -27.00 16 4 C 0.23 11.53 4.23 85.64 0.36 11.90 16 5 C -0.53 -32.08 9.94 25.60 0.25 -31.82 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.72 5.47 84.65 0.46 1.18 16 8 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 9 Si 0.95 45.84 27.47 68.60 1.88 47.72 16 10 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 13 C 0.50 20.73 7.43 87.66 0.65 21.38 16 14 O -0.57 -30.02 13.88 -3.04 -0.04 -30.06 16 15 C 0.05 1.48 3.60 85.56 0.31 1.79 16 16 N -0.52 -14.84 3.83 -901.60 -3.46 -18.30 16 17 C 0.04 1.47 7.58 127.69 0.97 2.43 16 18 C 0.09 1.71 2.27 44.91 0.10 1.81 16 19 H 0.11 1.71 7.91 -2.38 -0.02 1.69 16 20 C 0.05 0.66 6.29 71.98 0.45 1.12 16 21 O -0.58 -9.98 9.26 -148.98 -1.38 -11.36 16 22 C -0.06 -1.17 4.47 29.85 0.13 -1.04 16 23 C -0.07 -1.71 4.95 -19.87 -0.10 -1.81 16 24 C -0.11 -3.11 9.32 22.27 0.21 -2.90 16 25 C -0.14 -3.91 10.05 22.27 0.22 -3.69 16 26 C -0.14 -3.10 10.05 22.27 0.22 -2.88 16 27 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 28 C -0.12 -2.33 9.70 22.27 0.22 -2.12 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.25 7.22 -2.39 -0.02 1.23 16 32 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 33 H 0.09 2.16 6.44 -2.39 -0.02 2.14 16 34 H 0.05 2.09 7.13 -2.39 -0.02 2.07 16 35 H 0.01 0.69 6.85 -2.39 -0.02 0.67 16 36 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 37 H 0.07 1.81 6.16 -2.39 -0.01 1.80 16 38 H 0.12 2.72 6.96 -2.39 -0.02 2.70 16 39 H 0.04 1.32 6.00 -2.39 -0.01 1.31 16 40 H 0.03 1.32 5.99 -2.39 -0.01 1.30 16 41 H 0.07 2.17 5.79 -2.39 -0.01 2.15 16 42 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.05 0.68 6.70 -2.39 -0.02 0.67 16 44 H 0.39 3.67 9.12 -74.06 -0.68 3.00 16 45 H 0.07 1.54 5.74 -2.39 -0.01 1.53 16 46 H 0.10 1.36 8.09 -2.38 -0.02 1.34 16 47 H 0.10 3.20 8.06 -2.91 -0.02 3.18 16 48 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16 49 H 0.13 2.40 8.06 -2.91 -0.02 2.37 16 50 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 51 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -83.56 398.41 1.41 -82.15 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.19 Total: 23.61 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.94 Total: -6.21 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -5.19 Total: -105.86 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -1.42 Total: -41.42 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.88 Total: 47.72 kcal Total: -83.56 1.41 -82.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595596546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.783 kcal (2) G-P(sol) polarization free energy of solvation -83.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds