Wall clock time and date at job start Tue Mar 31 2020 17:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00565 * 2 1 4 4 C 1.52995 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47264 * 184.99689 * 4 3 2 6 6 C 1.52997 * 109.47465 * 304.99963 * 4 3 2 7 7 O 1.42903 * 109.47529 * 65.00034 * 4 3 2 8 8 C 1.35901 * 117.00425 * 146.90241 * 7 4 3 9 9 C 1.38728 * 120.05251 * 5.15991 * 8 7 4 10 10 C 1.38146 * 119.94073 * 179.74444 * 9 8 7 11 11 C 1.38260 * 120.05480 * 0.50601 * 10 9 8 12 12 C 1.50705 * 119.94363 * 179.74679 * 11 10 9 13 13 N 1.46897 * 109.47183 * 270.02134 * 12 11 10 14 14 C 1.46895 * 111.00097 * 294.30291 * 13 12 11 15 15 C 1.53242 * 109.33864 * 172.74604 * 14 13 12 16 16 N 1.47078 * 108.52348 * 53.83041 * 15 14 13 17 17 C 1.36938 * 120.88361 * 128.83445 * 16 15 14 18 18 H 1.08007 * 119.99734 * 328.75345 * 17 16 15 19 19 C 1.38812 * 120.00191 * 148.74958 * 17 16 15 20 20 N 1.31613 * 119.99989 * 165.63500 * 19 17 16 21 21 Si 1.86798 * 119.99636 * 345.63538 * 19 17 16 22 22 H 1.48504 * 109.47440 * 89.98861 * 21 19 17 23 23 H 1.48503 * 109.46972 * 209.98722 * 21 19 17 24 24 H 1.48498 * 109.47479 * 329.98413 * 21 19 17 25 25 C 1.47078 * 118.23488 * 308.81420 * 16 15 14 26 26 C 1.46904 * 111.00225 * 169.99842 * 13 12 11 27 27 C 1.38261 * 120.11599 * 359.76977 * 11 10 9 28 28 C 1.38153 * 120.05213 * 359.97438 * 27 11 10 29 29 H 1.09002 * 109.46927 * 300.00262 * 1 2 3 30 30 H 1.08999 * 109.46824 * 59.99770 * 1 2 3 31 31 H 1.09000 * 109.47731 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47081 * 60.00097 * 3 2 1 33 33 H 1.09004 * 109.47031 * 300.00072 * 3 2 1 34 34 H 1.09002 * 109.47103 * 59.99628 * 6 4 3 35 35 H 1.08996 * 109.47189 * 300.00413 * 6 4 3 36 36 H 1.09000 * 109.47536 * 180.02562 * 6 4 3 37 37 H 1.08003 * 120.03093 * 359.97438 * 9 8 7 38 38 H 1.08003 * 119.97071 * 180.23201 * 10 9 8 39 39 H 1.09000 * 109.47133 * 30.02228 * 12 11 10 40 40 H 1.08996 * 109.47053 * 150.01896 * 12 11 10 41 41 H 1.08999 * 109.49167 * 292.70759 * 14 13 12 42 42 H 1.08994 * 109.49470 * 52.78557 * 14 13 12 43 43 H 1.08999 * 109.62534 * 294.11512 * 15 14 13 44 44 H 1.09007 * 109.62775 * 173.54172 * 15 14 13 45 45 H 0.97000 * 119.99972 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.62872 * 291.47380 * 25 16 15 47 47 H 1.08998 * 109.62832 * 170.89611 * 25 16 15 48 48 H 1.09004 * 109.48841 * 307.21786 * 26 13 12 49 49 H 1.09005 * 109.48932 * 67.29083 * 26 13 12 50 50 H 1.08000 * 119.97612 * 179.97438 * 27 11 10 51 51 H 1.07994 * 120.02378 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9786 2.1763 0.0889 6 6 3.9790 0.3192 1.1806 7 8 3.9649 0.5795 -1.2220 8 6 5.1624 0.9825 -1.7226 9 6 5.9578 1.8596 -0.9998 10 6 7.1770 2.2637 -1.5085 11 6 7.5999 1.8028 -2.7415 12 6 8.9278 2.2496 -3.2965 13 7 8.7405 3.4710 -4.0909 14 6 7.9270 3.2031 -5.2844 15 6 7.6036 4.5268 -5.9856 16 7 8.8639 5.2411 -6.2395 17 6 9.1612 5.7202 -7.4875 18 1 8.7999 5.2035 -8.3644 19 6 9.9268 6.8699 -7.6254 20 7 10.4500 7.1758 -8.7936 21 14 10.2144 7.9826 -6.1528 22 1 11.4416 7.5497 -5.4374 23 1 10.3797 9.3838 -6.6161 24 1 9.0505 7.8991 -5.2344 25 6 9.7962 5.4277 -5.1174 26 6 10.0334 4.0687 -4.4504 27 6 6.8064 0.9329 -3.4664 28 6 5.5887 0.5218 -2.9597 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.5358 -0.6726 1.0911 35 1 3.6515 0.7806 2.1122 36 1 5.0656 0.2334 1.1804 37 1 5.6258 2.2235 -0.0386 38 1 7.7983 2.9436 -0.9445 39 1 9.6153 2.4522 -2.4753 40 1 9.3398 1.4639 -3.9298 41 1 8.4814 2.5569 -5.9649 42 1 6.9999 2.7116 -4.9898 43 1 6.9616 5.1326 -5.3461 44 1 7.0992 4.3266 -6.9310 45 1 10.9853 7.9790 -8.8899 46 1 9.3651 6.1202 -4.3944 47 1 10.7416 5.8233 -5.4888 48 1 10.6338 4.2048 -3.5509 49 1 10.5585 3.4104 -5.1426 50 1 7.1388 0.5746 -4.4295 51 1 4.9691 -0.1573 -3.5265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596995645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:28 Heat of formation + Delta-G solvation = -15.896028 kcal Electronic energy + Delta-G solvation = -28901.769819 eV Core-core repulsion = 24995.885787 eV Total energy + Delta-G solvation = -3905.884032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.51631 -38.97113 -38.13344 -37.20635 -34.57502 -32.87651 -31.70220 -31.04814 -30.50631 -30.07816 -27.81836 -27.08429 -26.11909 -24.51619 -23.48764 -23.15533 -22.25986 -21.54648 -20.57736 -19.36757 -18.56880 -16.82101 -16.72358 -16.65839 -16.10107 -15.80287 -15.35421 -15.31304 -14.96080 -14.67887 -14.48399 -14.29113 -14.05341 -13.86974 -13.64335 -13.58688 -13.10528 -12.98614 -12.84983 -12.60655 -12.41123 -12.29719 -12.05173 -11.87708 -11.71135 -11.57720 -11.37918 -11.35115 -10.92010 -10.86285 -10.72060 -10.53899 -10.26337 -10.11263 -10.02142 -9.76690 -9.46211 -9.00853 -8.62448 -8.17802 -7.89447 -6.85110 -5.91076 -3.32619 1.30650 1.39617 2.94760 3.31360 3.33763 3.50197 3.54896 3.67221 4.30697 4.43353 4.53624 4.55675 4.62671 4.76698 4.81383 4.87396 4.94249 4.94703 4.96593 5.04725 5.13494 5.20509 5.26882 5.29562 5.34010 5.37441 5.46049 5.56974 5.62734 5.70758 5.76174 5.80396 5.89071 5.98911 6.04644 6.05806 6.12505 6.24088 6.27454 6.31947 6.43494 6.61343 6.66287 6.66745 6.69847 6.74864 6.93075 7.33504 7.46351 7.52520 8.02786 8.37435 8.97094 9.74559 10.16310 11.25165 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.002184 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.939714 B =12818.048721 C =13124.006586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.063 3.937 4 C 0.082 3.918 5 H 0.090 0.910 6 C -0.170 4.170 7 O -0.302 6.302 8 C 0.124 3.876 9 C -0.214 4.214 10 C -0.058 4.058 11 C -0.105 4.105 12 C 0.095 3.905 13 N -0.529 5.529 14 C 0.039 3.961 15 C 0.153 3.847 16 N -0.610 5.610 17 C -0.258 4.258 18 H 0.084 0.916 19 C 0.021 3.979 20 N -0.915 5.915 21 Si 0.892 3.108 22 H -0.288 1.288 23 H -0.305 1.305 24 H -0.268 1.268 25 C 0.128 3.872 26 C 0.043 3.957 27 C -0.072 4.072 28 C -0.152 4.152 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.029 0.971 44 H 0.064 0.936 45 H 0.262 0.738 46 H 0.034 0.966 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.035 0.965 50 H 0.126 0.874 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.610 -14.822 21.512 29.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.014 4.014 4 C 0.026 3.974 5 H 0.108 0.892 6 C -0.228 4.228 7 O -0.216 6.216 8 C 0.079 3.921 9 C -0.232 4.232 10 C -0.076 4.076 11 C -0.106 4.106 12 C -0.033 4.033 13 N -0.254 5.254 14 C -0.090 4.090 15 C 0.027 3.973 16 N -0.334 5.334 17 C -0.386 4.386 18 H 0.101 0.899 19 C -0.177 4.177 20 N -0.558 5.558 21 Si 0.723 3.277 22 H -0.216 1.216 23 H -0.233 1.233 24 H -0.193 1.193 25 C 0.002 3.998 26 C -0.086 4.086 27 C -0.091 4.091 28 C -0.171 4.171 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.053 0.947 50 H 0.144 0.856 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.795 -14.657 21.590 29.998 hybrid contribution 0.535 0.546 0.417 0.871 sum -14.261 -14.111 22.007 29.779 Atomic orbital electron populations 1.22761 0.80999 1.02928 0.99969 1.87954 1.19577 1.26953 1.95375 1.22679 0.91748 0.85730 1.01235 1.22541 0.93137 0.97669 0.84088 0.89236 1.22183 1.01992 1.01912 0.96684 1.86207 1.33608 1.62776 1.39014 1.19011 0.85371 0.94463 0.93242 1.21181 0.97050 1.03243 1.01769 1.20779 0.94858 0.97029 0.94975 1.19691 0.97406 0.98478 0.95041 1.20993 0.93268 0.91748 0.97278 1.61963 1.16969 1.25190 1.21299 1.22716 0.96913 0.99157 0.90248 1.21006 0.88438 0.90517 0.97370 1.44386 1.15687 1.66418 1.06919 1.18925 1.31263 1.05374 0.83069 0.89869 1.25386 0.99124 0.97013 0.96199 1.69779 1.35657 1.26937 1.23426 0.86841 0.78143 0.79767 0.82988 1.21602 1.23309 1.19320 1.21477 0.94594 0.93709 0.89973 1.22648 0.89364 0.98050 0.98512 1.20905 0.93048 0.96132 0.98971 1.20361 0.97883 1.04372 0.94445 0.94152 0.93921 0.89504 0.91416 0.92198 0.90521 0.91294 0.91931 0.85644 0.85803 0.90472 0.94442 0.95093 0.91123 0.95322 0.91772 0.92799 0.94865 0.90882 0.91700 0.94674 0.85584 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.48 9.79 -40.08 -0.39 -3.87 16 3 C 0.06 0.48 5.81 37.15 0.22 0.69 16 4 C 0.08 0.70 2.61 -26.74 -0.07 0.63 16 5 H 0.09 0.66 5.77 -51.93 -0.30 0.36 16 6 C -0.17 -1.29 9.26 37.16 0.34 -0.95 16 7 O -0.30 -3.52 9.74 -24.27 -0.24 -3.76 16 8 C 0.12 1.49 6.68 -39.22 -0.26 1.22 16 9 C -0.21 -2.36 8.79 -39.43 -0.35 -2.70 16 10 C -0.06 -0.68 9.69 -39.61 -0.38 -1.07 16 11 C -0.11 -1.34 4.89 -104.60 -0.51 -1.85 16 12 C 0.09 1.28 5.12 -4.98 -0.03 1.25 16 13 N -0.53 -8.89 4.62 -235.76 -1.09 -9.98 16 14 C 0.04 0.68 5.34 -3.70 -0.02 0.66 16 15 C 0.15 3.17 6.69 -3.60 -0.02 3.15 16 16 N -0.61 -14.96 2.78 -172.01 -0.48 -15.43 16 17 C -0.26 -7.35 10.08 -15.06 -0.15 -7.51 16 18 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 19 C 0.02 0.63 5.32 -17.43 -0.09 0.54 16 20 N -0.91 -28.42 13.97 55.49 0.78 -27.65 16 21 Si 0.89 22.89 24.26 -169.99 -4.12 18.76 16 22 H -0.29 -7.08 6.60 56.52 0.37 -6.70 16 23 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 24 H -0.27 -6.82 6.40 56.52 0.36 -6.46 16 25 C 0.13 2.87 4.31 -3.61 -0.02 2.86 16 26 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 27 C -0.07 -0.87 7.85 -39.60 -0.31 -1.19 16 28 C -0.15 -1.83 9.99 -39.43 -0.39 -2.22 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.68 7.56 -51.93 -0.39 0.28 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.48 7.98 -51.93 -0.41 0.07 16 37 H 0.13 1.10 5.85 -52.48 -0.31 0.80 16 38 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.08 0.94 7.91 -51.93 -0.41 0.53 16 40 H 0.04 0.50 8.07 -51.93 -0.42 0.08 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.10 5.65 -51.93 -0.29 0.81 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 1.31 7.95 -51.92 -0.41 0.89 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 46 H 0.03 0.76 6.70 -51.93 -0.35 0.41 16 47 H 0.07 1.76 4.78 -51.93 -0.25 1.51 16 48 H 0.06 1.02 7.99 -51.93 -0.41 0.61 16 49 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.13 1.41 7.93 -52.49 -0.42 0.99 16 51 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -33.11 394.22 -9.21 -42.32 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.65 Total: -1.92 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.96 Total: -4.42 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.79 Total: -53.06 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.63 Total: -7.62 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.12 Total: 18.76 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.11 -9.21 -42.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596995645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.427 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds