Wall clock time and date at job start Tue Mar 31 2020 17:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00565 * 2 1 4 4 C 1.52995 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47264 * 184.99689 * 4 3 2 6 6 C 1.52997 * 109.47465 * 304.99963 * 4 3 2 7 7 O 1.42903 * 109.47529 * 65.00034 * 4 3 2 8 8 C 1.35901 * 117.00425 * 146.90241 * 7 4 3 9 9 C 1.38728 * 120.05251 * 5.15991 * 8 7 4 10 10 C 1.38146 * 119.94073 * 179.74444 * 9 8 7 11 11 C 1.38260 * 120.05480 * 0.50601 * 10 9 8 12 12 C 1.50705 * 119.94363 * 179.74679 * 11 10 9 13 13 N 1.46897 * 109.47183 * 270.02134 * 12 11 10 14 14 C 1.46895 * 111.00097 * 294.30291 * 13 12 11 15 15 C 1.53242 * 109.33864 * 172.74604 * 14 13 12 16 16 N 1.47078 * 108.52348 * 53.83041 * 15 14 13 17 17 C 1.36938 * 120.88361 * 128.83445 * 16 15 14 18 18 H 1.08007 * 119.99734 * 328.75345 * 17 16 15 19 19 C 1.38812 * 120.00191 * 148.74958 * 17 16 15 20 20 N 1.31613 * 119.99989 * 165.63500 * 19 17 16 21 21 Si 1.86798 * 119.99636 * 345.63538 * 19 17 16 22 22 H 1.48504 * 109.47440 * 89.98861 * 21 19 17 23 23 H 1.48503 * 109.46972 * 209.98722 * 21 19 17 24 24 H 1.48498 * 109.47479 * 329.98413 * 21 19 17 25 25 C 1.47078 * 118.23488 * 308.81420 * 16 15 14 26 26 C 1.46904 * 111.00225 * 169.99842 * 13 12 11 27 27 C 1.38261 * 120.11599 * 359.76977 * 11 10 9 28 28 C 1.38153 * 120.05213 * 359.97438 * 27 11 10 29 29 H 1.09002 * 109.46927 * 300.00262 * 1 2 3 30 30 H 1.08999 * 109.46824 * 59.99770 * 1 2 3 31 31 H 1.09000 * 109.47731 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47081 * 60.00097 * 3 2 1 33 33 H 1.09004 * 109.47031 * 300.00072 * 3 2 1 34 34 H 1.09002 * 109.47103 * 59.99628 * 6 4 3 35 35 H 1.08996 * 109.47189 * 300.00413 * 6 4 3 36 36 H 1.09000 * 109.47536 * 180.02562 * 6 4 3 37 37 H 1.08003 * 120.03093 * 359.97438 * 9 8 7 38 38 H 1.08003 * 119.97071 * 180.23201 * 10 9 8 39 39 H 1.09000 * 109.47133 * 30.02228 * 12 11 10 40 40 H 1.08996 * 109.47053 * 150.01896 * 12 11 10 41 41 H 1.08999 * 109.49167 * 292.70759 * 14 13 12 42 42 H 1.08994 * 109.49470 * 52.78557 * 14 13 12 43 43 H 1.08999 * 109.62534 * 294.11512 * 15 14 13 44 44 H 1.09007 * 109.62775 * 173.54172 * 15 14 13 45 45 H 0.97000 * 119.99972 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.62872 * 291.47380 * 25 16 15 47 47 H 1.08998 * 109.62832 * 170.89611 * 25 16 15 48 48 H 1.09004 * 109.48841 * 307.21786 * 26 13 12 49 49 H 1.09005 * 109.48932 * 67.29083 * 26 13 12 50 50 H 1.08000 * 119.97612 * 179.97438 * 27 11 10 51 51 H 1.07994 * 120.02378 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9786 2.1763 0.0889 6 6 3.9790 0.3192 1.1806 7 8 3.9649 0.5795 -1.2220 8 6 5.1624 0.9825 -1.7226 9 6 5.9578 1.8596 -0.9998 10 6 7.1770 2.2637 -1.5085 11 6 7.5999 1.8028 -2.7415 12 6 8.9278 2.2496 -3.2965 13 7 8.7405 3.4710 -4.0909 14 6 7.9270 3.2031 -5.2844 15 6 7.6036 4.5268 -5.9856 16 7 8.8639 5.2411 -6.2395 17 6 9.1612 5.7202 -7.4875 18 1 8.7999 5.2035 -8.3644 19 6 9.9268 6.8699 -7.6254 20 7 10.4500 7.1758 -8.7936 21 14 10.2144 7.9826 -6.1528 22 1 11.4416 7.5497 -5.4374 23 1 10.3797 9.3838 -6.6161 24 1 9.0505 7.8991 -5.2344 25 6 9.7962 5.4277 -5.1174 26 6 10.0334 4.0687 -4.4504 27 6 6.8064 0.9329 -3.4664 28 6 5.5887 0.5218 -2.9597 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.5358 -0.6726 1.0911 35 1 3.6515 0.7806 2.1122 36 1 5.0656 0.2334 1.1804 37 1 5.6258 2.2235 -0.0386 38 1 7.7983 2.9436 -0.9445 39 1 9.6153 2.4522 -2.4753 40 1 9.3398 1.4639 -3.9298 41 1 8.4814 2.5569 -5.9649 42 1 6.9999 2.7116 -4.9898 43 1 6.9616 5.1326 -5.3461 44 1 7.0992 4.3266 -6.9310 45 1 10.9853 7.9790 -8.8899 46 1 9.3651 6.1202 -4.3944 47 1 10.7416 5.8233 -5.4888 48 1 10.6338 4.2048 -3.5509 49 1 10.5585 3.4104 -5.1426 50 1 7.1388 0.5746 -4.4295 51 1 4.9691 -0.1573 -3.5265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596995645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:27 Heat of formation + Delta-G solvation = -37.697489 kcal Electronic energy + Delta-G solvation = -28902.715201 eV Core-core repulsion = 24995.885787 eV Total energy + Delta-G solvation = -3906.829414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.34242 -40.10021 -39.06738 -38.14014 -36.17632 -33.86895 -33.40411 -32.16986 -31.71153 -31.40631 -28.62214 -28.29326 -26.67639 -25.96535 -24.82828 -24.21674 -23.85928 -22.52542 -21.39065 -21.00712 -19.33415 -18.81748 -17.50198 -17.32935 -17.28873 -16.72624 -16.47851 -16.24185 -16.03111 -15.90405 -15.76221 -15.72639 -15.45586 -14.98370 -14.89564 -14.45935 -14.43037 -14.21592 -13.94555 -13.76003 -13.54281 -13.36712 -13.19365 -12.89034 -12.79414 -12.69008 -12.43393 -12.38898 -12.15107 -12.13147 -12.10192 -11.77842 -11.67663 -11.50354 -11.49381 -11.44775 -10.74784 -10.64934 -9.88185 -9.36167 -9.00044 -8.80983 -8.16896 -5.55564 0.42874 0.49408 1.29818 1.41780 1.52004 2.22705 2.41193 2.68981 2.81418 3.08558 3.17717 3.37577 3.71484 3.87457 3.92104 3.95541 3.98599 4.16939 4.19753 4.24419 4.28008 4.35936 4.43772 4.47230 4.48867 4.50072 4.53405 4.54961 4.58486 4.65948 4.70665 4.78482 4.80476 4.84790 4.86492 4.87784 4.91970 4.97683 5.02209 5.15264 5.27688 5.28637 5.38163 5.44393 5.74047 5.85785 5.86326 6.09183 6.14295 6.18342 6.22578 6.54625 6.90087 7.59091 8.03879 9.03065 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.002184 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.939714 B =12818.048721 C =13124.006586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.060 3.940 4 C 0.073 3.927 5 H 0.104 0.896 6 C -0.165 4.165 7 O -0.320 6.320 8 C 0.118 3.882 9 C -0.212 4.212 10 C -0.061 4.061 11 C -0.119 4.119 12 C 0.099 3.901 13 N -0.534 5.534 14 C 0.053 3.947 15 C 0.148 3.852 16 N -0.624 5.624 17 C -0.250 4.250 18 H 0.048 0.952 19 C -0.037 4.037 20 N -0.961 5.961 21 Si 0.958 3.042 22 H -0.268 1.268 23 H -0.311 1.311 24 H -0.263 1.263 25 C 0.123 3.877 26 C 0.053 3.947 27 C -0.077 4.077 28 C -0.166 4.166 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.022 0.978 42 H 0.091 0.909 43 H 0.031 0.969 44 H 0.057 0.943 45 H 0.262 0.738 46 H 0.036 0.964 47 H 0.055 0.945 48 H 0.098 0.902 49 H 0.025 0.975 50 H 0.131 0.869 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.128 -15.082 25.037 32.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.016 4.016 4 C 0.017 3.983 5 H 0.122 0.878 6 C -0.222 4.222 7 O -0.235 6.235 8 C 0.073 3.927 9 C -0.231 4.231 10 C -0.079 4.079 11 C -0.120 4.120 12 C -0.027 4.027 13 N -0.258 5.258 14 C -0.076 4.076 15 C 0.023 3.977 16 N -0.350 5.350 17 C -0.379 4.379 18 H 0.066 0.934 19 C -0.231 4.231 20 N -0.607 5.607 21 Si 0.786 3.214 22 H -0.195 1.195 23 H -0.240 1.240 24 H -0.187 1.187 25 C -0.002 4.002 26 C -0.076 4.076 27 C -0.095 4.095 28 C -0.184 4.184 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.114 0.886 40 H 0.059 0.941 41 H 0.040 0.960 42 H 0.110 0.890 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.116 0.884 49 H 0.043 0.957 50 H 0.149 0.851 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.334 -14.957 25.161 33.044 hybrid contribution 0.558 0.516 -0.666 1.011 sum -14.776 -14.441 24.494 32.044 Atomic orbital electron populations 1.22908 0.79660 1.03695 1.00836 1.87914 1.21187 1.27982 1.95582 1.22797 0.91108 0.85424 1.02298 1.22840 0.93919 0.98303 0.83191 0.87824 1.22138 1.01654 1.01073 0.97327 1.86198 1.33474 1.63397 1.40400 1.19182 0.85706 0.94489 0.93325 1.21401 0.96586 1.02592 1.02480 1.20994 0.95218 0.96972 0.94744 1.19690 0.97284 0.99298 0.95728 1.21018 0.94276 0.90211 0.97219 1.61931 1.16019 1.27227 1.20670 1.22490 0.98011 0.96761 0.90350 1.21146 0.87046 0.91876 0.97647 1.44518 1.17623 1.66682 1.06128 1.18836 1.30119 1.04948 0.84038 0.93445 1.26060 0.99573 0.98513 0.98999 1.69920 1.37336 1.27653 1.25825 0.85773 0.78899 0.77008 0.79681 1.19461 1.24006 1.18728 1.21515 0.93116 0.96341 0.89256 1.22467 0.90410 0.95400 0.99339 1.20991 0.93076 0.96208 0.99259 1.20516 0.98124 1.04811 0.94977 0.92510 0.93776 0.88915 0.88731 0.92667 0.92195 0.89079 0.92184 0.83452 0.84381 0.88580 0.94150 0.96000 0.89048 0.95085 0.92440 0.92894 0.94636 0.92725 0.88369 0.95667 0.85123 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -6.96 9.79 -144.35 -1.41 -8.37 16 3 C 0.06 0.80 5.81 71.98 0.42 1.22 16 4 C 0.07 1.10 2.61 30.59 0.08 1.18 16 5 H 0.10 1.22 5.77 -2.39 -0.01 1.21 16 6 C -0.16 -2.16 9.26 71.98 0.67 -1.49 16 7 O -0.32 -7.06 9.74 -87.80 -0.86 -7.91 16 8 C 0.12 2.63 6.68 22.50 0.15 2.78 16 9 C -0.21 -4.10 8.79 22.37 0.20 -3.90 16 10 C -0.06 -1.25 9.69 22.25 0.22 -1.03 16 11 C -0.12 -2.72 4.89 -19.85 -0.10 -2.82 16 12 C 0.10 2.37 5.12 85.56 0.44 2.81 16 13 N -0.53 -16.45 4.62 -899.82 -4.16 -20.60 16 14 C 0.05 1.76 5.34 86.39 0.46 2.22 16 15 C 0.15 6.06 6.69 86.35 0.58 6.64 16 16 N -0.62 -30.48 2.78 -698.12 -1.94 -32.42 16 17 C -0.25 -14.59 10.08 84.03 0.85 -13.75 16 18 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 19 C -0.04 -2.20 5.32 84.86 0.45 -1.75 16 20 N -0.96 -61.41 13.97 21.65 0.30 -61.11 16 21 Si 0.96 47.54 24.26 68.60 1.66 49.20 16 22 H -0.27 -12.34 6.60 99.48 0.66 -11.69 16 23 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 24 H -0.26 -12.65 6.40 99.48 0.64 -12.01 16 25 C 0.12 5.28 4.31 86.35 0.37 5.65 16 26 C 0.05 1.79 5.62 86.38 0.49 2.28 16 27 C -0.08 -1.73 7.85 22.25 0.17 -1.56 16 28 C -0.17 -3.78 9.99 22.37 0.22 -3.56 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.06 0.99 7.56 -2.39 -0.02 0.98 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.81 7.98 -2.39 -0.02 0.79 16 37 H 0.15 2.09 5.85 -2.91 -0.02 2.07 16 38 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 39 H 0.10 1.95 7.91 -2.39 -0.02 1.93 16 40 H 0.04 0.96 8.07 -2.39 -0.02 0.94 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 2.68 5.65 -2.39 -0.01 2.67 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 2.37 7.95 -2.38 -0.02 2.36 16 45 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 46 H 0.04 1.53 6.70 -2.39 -0.02 1.51 16 47 H 0.05 2.54 4.78 -2.39 -0.01 2.53 16 48 H 0.10 2.69 7.99 -2.38 -0.02 2.67 16 49 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 50 H 0.13 2.73 7.93 -2.91 -0.02 2.71 16 51 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -72.43 394.22 1.29 -71.14 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.78 Total: 13.64 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 6.91 Total: -3.56 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -5.79 Total: -114.14 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -2.27 Total: -16.28 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.66 Total: 49.20 kcal Total: -72.43 1.29 -71.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596995645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.447 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds