Wall clock time and date at job start Tue Mar 31 2020 18:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.47170 * 2 1 4 4 C 1.46899 * 110.99844 * 300.89879 * 3 2 1 5 5 C 1.53003 * 109.47019 * 293.25579 * 4 3 2 6 6 C 1.46895 * 110.99954 * 64.85328 * 3 2 1 7 7 C 1.53000 * 109.47307 * 66.04460 * 6 3 2 8 8 O 1.42903 * 109.46951 * 65.00008 * 7 6 3 9 9 C 1.42906 * 113.99996 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47143 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47190 * 64.99616 * 10 9 8 12 12 C 1.34774 * 119.99946 * 179.97438 * 11 10 9 13 13 O 1.21606 * 119.99694 * 0.02562 * 12 11 10 14 14 C 1.47431 * 119.99812 * 180.02562 * 12 11 10 15 15 C 1.39229 * 120.28509 * 355.82047 * 14 12 11 16 16 C 1.38223 * 120.09166 * 180.27864 * 15 14 12 17 17 C 1.38824 * 120.67515 * 359.69562 * 16 15 14 18 18 C 1.37594 * 120.57348 * 0.02562 * 17 16 15 19 19 C 1.40710 * 119.87746 * 0.02562 * 18 17 16 20 20 C 1.40892 * 120.32312 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.99954 * 215.60842 * 20 19 18 22 22 C 1.40271 * 120.00180 * 35.61057 * 20 19 18 23 23 N 1.30635 * 120.00027 * 191.06187 * 22 20 19 24 24 Si 1.86799 * 120.00286 * 11.06188 * 22 20 19 25 25 H 1.48497 * 109.47103 * 267.70744 * 24 22 20 26 26 H 1.48502 * 109.46930 * 27.70391 * 24 22 20 27 27 H 1.48501 * 109.47024 * 147.70343 * 24 22 20 28 28 H 1.09001 * 109.47369 * 64.91698 * 1 2 3 29 29 H 1.09002 * 109.47337 * 184.91554 * 1 2 3 30 30 H 1.09002 * 109.47350 * 304.91760 * 1 2 3 31 31 H 1.09002 * 109.47063 * 240.00232 * 2 1 3 32 32 H 1.08998 * 109.47474 * 120.00016 * 2 1 3 33 33 H 1.09000 * 109.47401 * 53.25489 * 4 3 2 34 34 H 1.09004 * 109.46909 * 173.25899 * 4 3 2 35 35 H 1.09000 * 109.46713 * 186.83716 * 5 4 3 36 36 H 1.09002 * 109.47489 * 306.83660 * 5 4 3 37 37 H 1.08998 * 109.46966 * 66.83633 * 5 4 3 38 38 H 1.09001 * 109.47209 * 306.04489 * 6 3 2 39 39 H 1.08999 * 109.47043 * 186.04490 * 6 3 2 40 40 H 1.09001 * 109.47018 * 305.00180 * 7 6 3 41 41 H 1.08998 * 109.47553 * 185.00102 * 7 6 3 42 42 H 1.08998 * 109.46697 * 59.99858 * 9 8 7 43 43 H 1.08999 * 109.46925 * 300.00146 * 9 8 7 44 44 H 1.09003 * 109.46716 * 305.00228 * 10 9 8 45 45 H 1.08995 * 109.47096 * 184.99971 * 10 9 8 46 46 H 0.97001 * 119.99490 * 0.02562 * 11 10 9 47 47 H 1.07999 * 119.95517 * 359.97438 * 15 14 12 48 48 H 1.08003 * 119.65898 * 179.72137 * 16 15 14 49 49 H 1.08003 * 119.71018 * 180.02562 * 17 16 15 50 50 H 1.08001 * 120.06135 * 180.02562 * 18 17 16 51 51 H 0.96998 * 120.00292 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5311 2.1161 -1.1768 5 6 2.1576 1.5244 -2.4411 6 6 1.6457 2.0756 1.2414 7 6 2.3745 1.4318 2.4226 8 8 3.7817 1.6387 2.2841 9 6 4.5593 1.0729 3.3412 10 6 6.0421 1.3545 3.0906 11 7 6.2839 2.7977 3.1611 12 6 7.5270 3.2827 2.9715 13 8 8.4477 2.5224 2.7413 14 6 7.7704 4.7350 3.0430 15 6 6.7078 5.6172 3.2197 16 6 6.9399 6.9784 3.2804 17 6 8.2290 7.4826 3.1732 18 6 9.2999 6.6354 3.0038 19 6 9.0906 5.2456 2.9377 20 6 10.1804 4.3696 2.7639 21 1 10.0645 3.4747 2.1703 22 6 11.4157 4.6597 3.3617 23 7 12.4780 3.9749 3.0313 24 14 11.5419 6.0251 4.6302 25 1 11.9065 7.2962 3.9545 26 1 10.2344 6.1862 5.3157 27 1 12.5849 5.6783 5.6287 28 1 -0.3634 0.4357 -0.9307 29 1 -0.3634 -1.0239 0.0881 30 1 -0.3634 0.5882 0.8427 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.4461 2.0290 -1.2341 34 1 1.8074 3.1671 -1.0921 35 1 1.8923 2.1403 -3.3004 36 1 3.2420 1.5003 -2.3322 37 1 1.7850 0.5112 -2.5912 38 1 0.5690 1.9956 1.3916 39 1 1.9256 3.1267 1.1709 40 1 2.1645 0.3624 2.4399 41 1 2.0305 1.8847 3.3524 42 1 4.3944 -0.0039 3.3771 43 1 4.2606 1.5181 4.2902 44 1 6.3196 0.9875 2.1024 45 1 6.6410 0.8482 3.8476 46 1 5.5495 3.4040 3.3451 47 1 5.7002 5.2377 3.3044 48 1 6.1100 7.6567 3.4131 49 1 8.3925 8.5490 3.2232 50 1 10.2993 7.0366 2.9218 51 1 13.3324 4.1757 3.4444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601436737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:28 Heat of formation + Delta-G solvation = -54.736304 kcal Electronic energy + Delta-G solvation = -28819.271749 eV Core-core repulsion = 24911.703476 eV Total energy + Delta-G solvation = -3907.568273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.22387 -38.88746 -37.60509 -36.78661 -34.16761 -33.46704 -31.89226 -31.15572 -30.40719 -30.30440 -28.58818 -27.28823 -25.27873 -24.55201 -22.91200 -22.39356 -21.90812 -20.77499 -19.93569 -19.43855 -17.53613 -17.04808 -16.84834 -16.61852 -16.02073 -15.70328 -15.26599 -14.83375 -14.57826 -14.36786 -14.07269 -14.03822 -13.95190 -13.53487 -13.36181 -13.23187 -12.82898 -12.60254 -12.47240 -12.44412 -12.22284 -12.14732 -11.89038 -11.78925 -11.61761 -11.39931 -11.39134 -11.28812 -10.99424 -10.87496 -10.68593 -10.62150 -10.38235 -10.10827 -9.74886 -9.62777 -9.19576 -8.43014 -8.38354 -8.27475 -7.74591 -7.52921 -6.84874 -4.42145 2.18340 2.66428 3.12366 3.20990 3.32773 3.55775 3.69274 3.98583 4.05081 4.10989 4.64605 4.66026 4.67484 4.84201 4.92040 5.00509 5.02338 5.07176 5.16596 5.20092 5.23914 5.30840 5.33287 5.37688 5.43072 5.46828 5.58700 5.69809 5.73975 5.81327 5.85515 5.86933 5.93471 6.00546 6.08214 6.11294 6.22936 6.47808 6.57891 6.85056 6.86112 6.89208 7.15419 7.16997 7.25436 7.31057 7.46731 7.65785 7.82690 8.08528 8.44102 8.54348 8.71188 8.94141 9.47265 10.11733 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002432 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.242570 B =11511.481581 C =11882.862085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 N -0.524 5.524 4 C 0.047 3.953 5 C -0.149 4.149 6 C 0.052 3.948 7 C 0.065 3.935 8 O -0.363 6.363 9 C 0.051 3.949 10 C 0.130 3.870 11 N -0.741 5.741 12 C 0.561 3.439 13 O -0.531 6.531 14 C -0.247 4.247 15 C -0.040 4.040 16 C -0.256 4.256 17 C -0.066 4.066 18 C -0.228 4.228 19 C 0.116 3.884 20 C -0.401 4.401 21 H 0.125 0.875 22 C 0.078 3.922 23 N -0.794 5.794 24 Si 0.908 3.092 25 H -0.269 1.269 26 H -0.243 1.243 27 H -0.290 1.290 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.393 0.607 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.104 0.896 51 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.363 -5.147 -1.870 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.084 4.084 3 N -0.248 5.248 4 C -0.081 4.081 5 C -0.206 4.206 6 C -0.076 4.076 7 C -0.012 4.012 8 O -0.282 6.282 9 C -0.026 4.026 10 C 0.005 3.995 11 N -0.397 5.397 12 C 0.354 3.646 13 O -0.409 6.409 14 C -0.252 4.252 15 C -0.058 4.058 16 C -0.276 4.276 17 C -0.084 4.084 18 C -0.247 4.247 19 C 0.112 3.888 20 C -0.428 4.428 21 H 0.143 0.857 22 C -0.142 4.142 23 N -0.417 5.417 24 Si 0.734 3.266 25 H -0.195 1.195 26 H -0.166 1.166 27 H -0.217 1.217 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.228 0.772 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.122 0.878 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.789 -5.752 -2.233 21.685 hybrid contribution -1.288 0.753 0.945 1.766 sum -22.077 -4.999 -1.288 22.673 Atomic orbital electron populations 1.22446 0.98658 1.02276 1.01957 1.22234 0.92361 0.90767 1.03055 1.62200 1.59188 1.01853 1.01562 1.22123 0.97040 0.98362 0.90531 1.21776 1.02372 1.00367 0.96105 1.22174 0.96647 0.99438 0.89309 1.22506 0.82626 0.99162 0.96892 1.88098 1.16089 1.77859 1.46179 1.22777 0.91771 0.97667 0.90384 1.21131 0.92209 0.83452 1.02659 1.45869 1.10636 1.06691 1.76493 1.18332 0.81272 0.88867 0.76136 1.90716 1.42010 1.59779 1.48414 1.19418 0.94704 0.90733 1.20317 1.20783 0.96096 0.93503 0.95461 1.20271 0.95849 0.94502 1.16941 1.20725 0.93235 0.97605 0.96853 1.21141 0.97552 0.93716 1.12308 1.17563 0.91974 0.91420 0.87888 1.20226 0.90849 1.07932 1.23807 0.85736 1.26395 0.94640 0.96130 0.97023 1.69579 1.00374 1.36092 1.35692 0.86387 0.79523 0.80261 0.80426 1.19467 1.16614 1.21717 0.92355 0.92131 0.92547 0.90419 0.90663 0.94736 0.90802 0.92451 0.91361 0.93063 0.93245 0.89741 0.93461 0.93248 0.92400 0.93124 0.91196 0.90790 0.77226 0.88682 0.88637 0.88667 0.87820 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.28 9.21 37.15 0.34 -0.93 16 2 C 0.04 0.36 5.64 -3.82 -0.02 0.34 16 3 N -0.52 -5.16 4.65 -234.63 -1.09 -6.25 16 4 C 0.05 0.41 5.43 -3.82 -0.02 0.39 16 5 C -0.15 -1.27 9.68 37.16 0.36 -0.91 16 6 C 0.05 0.47 5.18 -3.83 -0.02 0.45 16 7 C 0.07 0.61 6.00 37.16 0.22 0.83 16 8 O -0.36 -4.60 10.24 -35.23 -0.36 -4.96 16 9 C 0.05 0.59 6.07 37.16 0.23 0.81 16 10 C 0.13 2.01 6.06 -4.04 -0.02 1.99 16 11 N -0.74 -13.51 5.45 -61.38 -0.33 -13.85 16 12 C 0.56 13.23 7.72 -12.52 -0.10 13.14 16 13 O -0.53 -14.55 13.52 5.27 0.07 -14.48 16 14 C -0.25 -5.98 5.92 -104.37 -0.62 -6.59 16 15 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 16 C -0.26 -5.18 10.03 -39.37 -0.39 -5.58 16 17 C -0.07 -1.40 10.01 -39.60 -0.40 -1.80 16 18 C -0.23 -5.53 7.03 -38.88 -0.27 -5.80 16 19 C 0.12 3.08 5.05 -106.54 -0.54 2.54 16 20 C -0.40 -11.53 8.34 -37.81 -0.32 -11.84 16 21 H 0.13 3.96 5.92 -52.48 -0.31 3.65 16 22 C 0.08 2.13 5.47 -17.30 -0.09 2.04 16 23 N -0.79 -21.97 13.92 55.56 0.77 -21.19 16 24 Si 0.91 21.14 24.50 -169.99 -4.17 16.98 16 25 H -0.27 -5.96 6.72 56.52 0.38 -5.58 16 26 H -0.24 -5.79 6.77 56.52 0.38 -5.41 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.06 0.39 6.52 -51.93 -0.34 0.05 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 6.18 -51.93 -0.32 0.04 16 31 H 0.08 0.65 6.69 -51.93 -0.35 0.30 16 32 H 0.08 0.62 6.17 -51.93 -0.32 0.30 16 33 H 0.03 0.27 6.05 -51.93 -0.31 -0.05 16 34 H 0.07 0.68 7.92 -51.93 -0.41 0.27 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.40 6.93 -51.93 -0.36 0.04 16 38 H 0.05 0.36 6.08 -51.93 -0.32 0.05 16 39 H 0.08 0.82 7.92 -51.93 -0.41 0.41 16 40 H 0.05 0.40 6.25 -51.93 -0.32 0.07 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.39 6.31 6.52 -40.82 -0.27 6.04 16 47 H 0.10 1.63 6.42 -52.49 -0.34 1.29 16 48 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 49 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 50 H 0.10 2.48 4.93 -52.49 -0.26 2.22 16 51 H 0.29 7.10 8.29 -40.82 -0.34 6.76 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -31.88 395.28 -9.23 -41.11 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -8.04 Total: 8.80 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.04 Total: -12.12 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -0.65 Total: -41.29 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.29 Total: -19.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.17 Total: 16.98 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.88 -9.23 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.628 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds