Wall clock time and date at job start Tue Mar 31 2020 18:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.47170 * 2 1 4 4 C 1.46899 * 110.99844 * 300.89879 * 3 2 1 5 5 C 1.53003 * 109.47019 * 293.25579 * 4 3 2 6 6 C 1.46895 * 110.99954 * 64.85328 * 3 2 1 7 7 C 1.53000 * 109.47307 * 66.04460 * 6 3 2 8 8 O 1.42903 * 109.46951 * 65.00008 * 7 6 3 9 9 C 1.42906 * 113.99996 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47143 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47190 * 64.99616 * 10 9 8 12 12 C 1.34774 * 119.99946 * 179.97438 * 11 10 9 13 13 O 1.21606 * 119.99694 * 0.02562 * 12 11 10 14 14 C 1.47431 * 119.99812 * 180.02562 * 12 11 10 15 15 C 1.39229 * 120.28509 * 355.82047 * 14 12 11 16 16 C 1.38223 * 120.09166 * 180.27864 * 15 14 12 17 17 C 1.38824 * 120.67515 * 359.69562 * 16 15 14 18 18 C 1.37594 * 120.57348 * 0.02562 * 17 16 15 19 19 C 1.40710 * 119.87746 * 0.02562 * 18 17 16 20 20 C 1.40892 * 120.32312 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.99954 * 215.60842 * 20 19 18 22 22 C 1.40271 * 120.00180 * 35.61057 * 20 19 18 23 23 N 1.30635 * 120.00027 * 191.06187 * 22 20 19 24 24 Si 1.86799 * 120.00286 * 11.06188 * 22 20 19 25 25 H 1.48497 * 109.47103 * 267.70744 * 24 22 20 26 26 H 1.48502 * 109.46930 * 27.70391 * 24 22 20 27 27 H 1.48501 * 109.47024 * 147.70343 * 24 22 20 28 28 H 1.09001 * 109.47369 * 64.91698 * 1 2 3 29 29 H 1.09002 * 109.47337 * 184.91554 * 1 2 3 30 30 H 1.09002 * 109.47350 * 304.91760 * 1 2 3 31 31 H 1.09002 * 109.47063 * 240.00232 * 2 1 3 32 32 H 1.08998 * 109.47474 * 120.00016 * 2 1 3 33 33 H 1.09000 * 109.47401 * 53.25489 * 4 3 2 34 34 H 1.09004 * 109.46909 * 173.25899 * 4 3 2 35 35 H 1.09000 * 109.46713 * 186.83716 * 5 4 3 36 36 H 1.09002 * 109.47489 * 306.83660 * 5 4 3 37 37 H 1.08998 * 109.46966 * 66.83633 * 5 4 3 38 38 H 1.09001 * 109.47209 * 306.04489 * 6 3 2 39 39 H 1.08999 * 109.47043 * 186.04490 * 6 3 2 40 40 H 1.09001 * 109.47018 * 305.00180 * 7 6 3 41 41 H 1.08998 * 109.47553 * 185.00102 * 7 6 3 42 42 H 1.08998 * 109.46697 * 59.99858 * 9 8 7 43 43 H 1.08999 * 109.46925 * 300.00146 * 9 8 7 44 44 H 1.09003 * 109.46716 * 305.00228 * 10 9 8 45 45 H 1.08995 * 109.47096 * 184.99971 * 10 9 8 46 46 H 0.97001 * 119.99490 * 0.02562 * 11 10 9 47 47 H 1.07999 * 119.95517 * 359.97438 * 15 14 12 48 48 H 1.08003 * 119.65898 * 179.72137 * 16 15 14 49 49 H 1.08003 * 119.71018 * 180.02562 * 17 16 15 50 50 H 1.08001 * 120.06135 * 180.02562 * 18 17 16 51 51 H 0.96998 * 120.00292 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5311 2.1161 -1.1768 5 6 2.1576 1.5244 -2.4411 6 6 1.6457 2.0756 1.2414 7 6 2.3745 1.4318 2.4226 8 8 3.7817 1.6387 2.2841 9 6 4.5593 1.0729 3.3412 10 6 6.0421 1.3545 3.0906 11 7 6.2839 2.7977 3.1611 12 6 7.5270 3.2827 2.9715 13 8 8.4477 2.5224 2.7413 14 6 7.7704 4.7350 3.0430 15 6 6.7078 5.6172 3.2197 16 6 6.9399 6.9784 3.2804 17 6 8.2290 7.4826 3.1732 18 6 9.2999 6.6354 3.0038 19 6 9.0906 5.2456 2.9377 20 6 10.1804 4.3696 2.7639 21 1 10.0645 3.4747 2.1703 22 6 11.4157 4.6597 3.3617 23 7 12.4780 3.9749 3.0313 24 14 11.5419 6.0251 4.6302 25 1 11.9065 7.2962 3.9545 26 1 10.2344 6.1862 5.3157 27 1 12.5849 5.6783 5.6287 28 1 -0.3634 0.4357 -0.9307 29 1 -0.3634 -1.0239 0.0881 30 1 -0.3634 0.5882 0.8427 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.4461 2.0290 -1.2341 34 1 1.8074 3.1671 -1.0921 35 1 1.8923 2.1403 -3.3004 36 1 3.2420 1.5003 -2.3322 37 1 1.7850 0.5112 -2.5912 38 1 0.5690 1.9956 1.3916 39 1 1.9256 3.1267 1.1709 40 1 2.1645 0.3624 2.4399 41 1 2.0305 1.8847 3.3524 42 1 4.3944 -0.0039 3.3771 43 1 4.2606 1.5181 4.2902 44 1 6.3196 0.9875 2.1024 45 1 6.6410 0.8482 3.8476 46 1 5.5495 3.4040 3.3451 47 1 5.7002 5.2377 3.3044 48 1 6.1100 7.6567 3.4131 49 1 8.3925 8.5490 3.2232 50 1 10.2993 7.0366 2.9218 51 1 13.3324 4.1757 3.4444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601436737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:27 Heat of formation + Delta-G solvation = -77.896013 kcal Electronic energy + Delta-G solvation = -28820.276029 eV Core-core repulsion = 24911.703476 eV Total energy + Delta-G solvation = -3908.572553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.80082 -39.82148 -38.86722 -38.22479 -35.84435 -35.26614 -32.73783 -32.27743 -32.13423 -31.56062 -29.82996 -28.09353 -27.14076 -25.17212 -24.43361 -23.47425 -23.09008 -22.48710 -21.19380 -20.58697 -19.44779 -18.37772 -17.85835 -17.60120 -17.16068 -16.91883 -16.71858 -15.95661 -15.86981 -15.79757 -15.70543 -15.27680 -15.20569 -14.91837 -14.50110 -14.30691 -14.16547 -13.91294 -13.85721 -13.64126 -13.31080 -13.14817 -13.07130 -12.91808 -12.68055 -12.65876 -12.49444 -12.31990 -12.21199 -12.16118 -12.06836 -11.99185 -11.70306 -11.59580 -11.35542 -11.06057 -10.47632 -10.26757 -9.94932 -9.49169 -9.39699 -9.08120 -8.81016 -6.46636 0.37008 0.85459 1.24440 1.38355 1.47671 2.11510 2.29417 2.48696 2.72759 2.76886 3.03402 3.56568 3.91002 4.02208 4.10584 4.21521 4.24232 4.26860 4.30453 4.31723 4.38492 4.44207 4.46220 4.48510 4.52139 4.57996 4.63460 4.66908 4.73698 4.77804 4.79078 4.84138 4.96597 4.99000 5.04406 5.05370 5.13219 5.14725 5.26433 5.31707 5.43844 5.49092 5.65988 5.71607 5.89147 5.98556 6.17869 6.23787 6.29681 6.42980 6.49614 6.70726 6.80934 6.96107 7.68454 8.23281 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002432 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.242570 B =11511.481581 C =11882.862085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.044 3.956 3 N -0.549 5.549 4 C 0.048 3.952 5 C -0.145 4.145 6 C 0.053 3.947 7 C 0.063 3.937 8 O -0.392 6.392 9 C 0.064 3.936 10 C 0.125 3.875 11 N -0.719 5.719 12 C 0.552 3.448 13 O -0.582 6.582 14 C -0.266 4.266 15 C -0.038 4.038 16 C -0.231 4.231 17 C -0.061 4.061 18 C -0.248 4.248 19 C 0.098 3.902 20 C -0.450 4.450 21 H 0.071 0.929 22 C 0.034 3.966 23 N -0.849 5.849 24 Si 0.970 3.030 25 H -0.248 1.248 26 H -0.250 1.250 27 H -0.280 1.280 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.072 0.928 46 H 0.408 0.592 47 H 0.137 0.863 48 H 0.144 0.856 49 H 0.137 0.863 50 H 0.102 0.898 51 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.732 -2.662 -0.239 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.084 4.084 3 N -0.273 5.273 4 C -0.080 4.080 5 C -0.203 4.203 6 C -0.075 4.075 7 C -0.014 4.014 8 O -0.311 6.311 9 C -0.013 4.013 10 C 0.002 3.998 11 N -0.374 5.374 12 C 0.344 3.656 13 O -0.463 6.463 14 C -0.270 4.270 15 C -0.057 4.057 16 C -0.250 4.250 17 C -0.080 4.080 18 C -0.267 4.267 19 C 0.094 3.906 20 C -0.479 4.479 21 H 0.089 0.911 22 C -0.179 4.179 23 N -0.476 5.476 24 Si 0.792 3.208 25 H -0.172 1.172 26 H -0.173 1.173 27 H -0.206 1.206 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.245 0.755 47 H 0.154 0.846 48 H 0.162 0.838 49 H 0.155 0.845 50 H 0.120 0.880 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.227 -3.261 -0.604 25.444 hybrid contribution -0.302 0.016 0.364 0.473 sum -25.528 -3.245 -0.240 25.735 Atomic orbital electron populations 1.22362 0.97165 1.02935 1.02060 1.22215 0.93559 0.89916 1.02663 1.62187 1.60241 1.02697 1.02187 1.22111 0.97795 0.97799 0.90261 1.21746 1.00754 1.01085 0.96718 1.22196 0.97723 0.98670 0.88918 1.22696 0.80747 1.00092 0.97853 1.88055 1.18014 1.78263 1.46801 1.22655 0.88495 0.99230 0.90920 1.21284 0.95735 0.81501 1.01318 1.45659 1.09130 1.08255 1.74328 1.18565 0.82282 0.88907 0.75837 1.90717 1.44074 1.60853 1.50691 1.19812 0.95210 0.91823 1.20186 1.21206 0.96894 0.93603 0.93969 1.20932 0.96827 0.94811 1.12422 1.21247 0.92732 0.99443 0.94550 1.21246 0.98897 0.92967 1.13616 1.17837 0.92355 0.92503 0.87884 1.19966 0.93292 1.07637 1.26988 0.91070 1.27153 0.93816 0.98476 0.98503 1.69635 1.01112 1.38720 1.38117 0.85454 0.79165 0.78140 0.78023 1.17237 1.17309 1.20632 0.92417 0.91257 0.92119 0.91114 0.90820 0.93339 0.91573 0.91362 0.93725 0.92436 0.91262 0.90807 0.92493 0.91264 0.90098 0.90892 0.93626 0.91026 0.75540 0.84568 0.83783 0.84506 0.88003 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 9.21 71.98 0.66 -1.35 16 2 C 0.04 0.66 5.64 86.30 0.49 1.15 16 3 N -0.55 -10.08 4.65 -896.23 -4.17 -14.25 16 4 C 0.05 0.79 5.43 86.30 0.47 1.26 16 5 C -0.15 -2.42 9.68 71.98 0.70 -1.72 16 6 C 0.05 0.82 5.18 86.30 0.45 1.27 16 7 C 0.06 0.98 6.00 71.98 0.43 1.41 16 8 O -0.39 -9.08 10.24 -148.98 -1.52 -10.60 16 9 C 0.06 1.32 6.07 71.98 0.44 1.76 16 10 C 0.13 3.90 6.06 86.38 0.52 4.42 16 11 N -0.72 -25.83 5.45 -466.36 -2.54 -28.37 16 12 C 0.55 26.86 7.72 86.67 0.67 27.53 16 13 O -0.58 -34.38 13.52 -4.05 -0.05 -34.43 16 14 C -0.27 -12.82 5.92 -19.70 -0.12 -12.94 16 15 C -0.04 -1.43 9.52 22.50 0.21 -1.21 16 16 C -0.23 -7.97 10.03 22.41 0.22 -7.75 16 17 C -0.06 -2.34 10.01 22.26 0.22 -2.12 16 18 C -0.25 -11.71 7.03 22.72 0.16 -11.55 16 19 C 0.10 5.32 5.05 -21.11 -0.11 5.22 16 20 C -0.45 -27.86 8.34 23.41 0.20 -27.66 16 21 H 0.07 5.05 5.92 -2.91 -0.02 5.03 16 22 C 0.03 1.99 5.47 85.37 0.47 2.45 16 23 N -0.85 -50.60 13.92 21.88 0.30 -50.30 16 24 Si 0.97 44.65 24.50 68.60 1.68 46.33 16 25 H -0.25 -10.40 6.72 99.48 0.67 -9.73 16 26 H -0.25 -11.53 6.77 99.48 0.67 -10.86 16 27 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 28 H 0.06 0.63 6.52 -2.39 -0.02 0.62 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.60 6.18 -2.39 -0.01 0.59 16 31 H 0.07 1.13 6.69 -2.39 -0.02 1.11 16 32 H 0.07 1.10 6.17 -2.39 -0.01 1.09 16 33 H 0.05 0.66 6.05 -2.39 -0.01 0.64 16 34 H 0.07 1.16 7.92 -2.38 -0.02 1.14 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.86 6.93 -2.39 -0.02 0.84 16 38 H 0.07 0.80 6.08 -2.39 -0.01 0.78 16 39 H 0.07 1.29 7.92 -2.39 -0.02 1.27 16 40 H 0.06 0.78 6.25 -2.39 -0.01 0.77 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.41 12.02 6.52 -92.71 -0.60 11.41 16 47 H 0.14 3.93 6.42 -2.91 -0.02 3.92 16 48 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 49 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 50 H 0.10 4.77 4.93 -2.91 -0.01 4.76 16 51 H 0.29 15.55 8.29 -92.71 -0.77 14.78 16 Total: -1.00 -77.33 395.28 0.04 -77.29 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.26 Total: 34.18 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 6.08 Total: -19.84 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -6.41 Total: -92.93 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -1.58 Total: -45.04 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.68 Total: 46.33 kcal Total: -77.33 0.04 -77.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.605 kcal (2) G-P(sol) polarization free energy of solvation -77.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds