Wall clock time and date at job start Tue Mar 31 2020 19:19:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46501 * 109.47144 * 2 1
4 4 C 1.34772 * 120.00009 * 179.97438 * 3 2 1
5 5 O 1.21284 * 120.00290 * 0.02562 * 4 3 2
6 6 C 1.50704 * 120.00124 * 180.02562 * 4 3 2
7 7 O 1.42903 * 109.47252 * 180.02562 * 6 4 3
8 8 C 1.35896 * 116.99811 * 180.02562 * 7 6 4
9 9 C 1.38755 * 120.05772 * 0.02562 * 8 7 6
10 10 C 1.38123 * 119.94386 * 179.97438 * 9 8 7
11 11 C 1.38284 * 120.05592 * 359.74654 * 10 9 8
12 12 C 1.38246 * 120.11084 * 0.51067 * 11 10 9
13 13 C 1.50706 * 119.97383 * 179.76405 * 12 11 10
14 14 N 1.46893 * 109.47176 * 269.72831 * 13 12 11
15 15 C 1.46903 * 110.99924 * 179.97438 * 14 13 12
16 16 C 1.53003 * 109.47090 * 179.97438 * 15 14 13
17 17 H 1.09001 * 109.47116 * 304.99858 * 16 15 14
18 18 C 1.53000 * 109.47203 * 65.00075 * 16 15 14
19 19 C 1.52996 * 109.47118 * 184.99777 * 16 15 14
20 20 C 1.50703 * 109.47343 * 175.00132 * 19 16 15
21 21 H 1.07997 * 119.99829 * 0.02562 * 20 19 16
22 22 C 1.37874 * 120.00190 * 180.02562 * 20 19 16
23 23 N 1.31515 * 120.00148 * 179.97438 * 22 20 19
24 24 Si 1.86803 * 120.00154 * 0.02562 * 22 20 19
25 25 H 1.48500 * 109.47431 * 89.99740 * 24 22 20
26 26 H 1.48492 * 109.47201 * 210.00404 * 24 22 20
27 27 H 1.48503 * 109.46831 * 329.99961 * 24 22 20
28 28 C 1.38167 * 120.05898 * 359.49012 * 12 11 10
29 29 H 1.09000 * 109.47478 * 59.99424 * 1 2 3
30 30 H 1.09002 * 109.47581 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46994 * 299.99176 * 1 2 3
32 32 H 1.09010 * 109.46873 * 240.00542 * 2 1 3
33 33 H 1.09000 * 109.47478 * 120.00576 * 2 1 3
34 34 H 0.96996 * 119.99662 * 0.02562 * 3 2 1
35 35 H 1.09001 * 109.46754 * 60.00279 * 6 4 3
36 36 H 1.09000 * 109.47036 * 300.00447 * 6 4 3
37 37 H 1.07995 * 120.02737 * 359.95989 * 9 8 7
38 38 H 1.07995 * 119.96781 * 180.02562 * 10 9 8
39 39 H 1.07999 * 119.94679 * 180.27649 * 11 10 9
40 40 H 1.09001 * 109.46953 * 29.72291 * 13 12 11
41 41 H 1.09000 * 109.47318 * 149.71889 * 13 12 11
42 42 H 1.00904 * 110.99720 * 303.94906 * 14 13 12
43 43 H 1.08993 * 109.46933 * 299.99334 * 15 14 13
44 44 H 1.09003 * 109.46864 * 60.00013 * 15 14 13
45 45 H 1.08993 * 109.47273 * 180.02562 * 18 16 15
46 46 H 1.08999 * 109.46977 * 299.99935 * 18 16 15
47 47 H 1.09001 * 109.46807 * 59.99593 * 18 16 15
48 48 H 1.09003 * 109.47123 * 295.00294 * 19 16 15
49 49 H 1.09001 * 109.47187 * 55.00114 * 19 16 15
50 50 H 0.96994 * 120.00210 * 179.97438 * 23 22 20
51 51 H 1.07994 * 120.03098 * 180.23012 * 28 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 3.3433 1.6275 0.0005
5 8 4.1315 0.7057 0.0005
6 6 3.8457 3.0483 0.0011
7 8 5.2747 3.0483 0.0010
8 6 5.8916 4.2592 0.0020
9 6 5.1371 5.4236 0.0036
10 6 5.7665 6.6531 0.0052
11 6 7.1475 6.7241 0.0105
12 6 7.9016 5.5654 0.0035
13 6 9.4065 5.6465 0.0039
14 7 9.8957 5.6745 -1.3809
15 6 11.3620 5.7541 -1.4197
16 6 11.8330 5.7806 -2.8752
17 1 11.4306 4.9160 -3.4031
18 6 11.3401 7.0636 -3.5475
19 6 13.3618 5.7378 -2.9174
20 6 13.8223 5.6400 -4.3490
21 1 13.0971 5.6117 -5.1488
22 6 15.1695 5.5867 -4.6378
23 7 15.5713 5.5008 -5.8870
24 14 16.4238 5.6349 -3.2544
25 1 16.7187 4.2506 -2.8050
26 1 17.6728 6.2741 -3.7408
27 1 15.8771 6.4185 -2.1176
28 6 7.2768 4.3331 0.0019
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5137 0.8901
32 1 1.8933 -0.5138 -0.8901
33 1 1.8933 -0.5139 0.8899
34 1 1.3879 2.1184 0.0004
35 1 3.4821 3.5618 0.8912
36 1 3.4826 3.5624 -0.8888
37 1 4.0585 5.3687 0.0034
38 1 5.1796 7.5596 0.0069
39 1 7.6379 7.6863 0.0162
40 1 9.7213 6.5541 0.5188
41 1 9.8171 4.7768 0.5168
42 1 9.5629 4.8746 -1.8982
43 1 11.6900 6.6627 -0.9149
44 1 11.7865 4.8853 -0.9166
45 1 11.6752 7.0822 -4.5845
46 1 10.2509 7.0941 -3.5175
47 1 11.7425 7.9281 -3.0196
48 1 13.7633 6.6460 -2.4678
49 1 13.7164 4.8698 -2.3616
50 1 16.5190 5.4637 -6.0902
51 1 7.8663 3.4282 0.0002
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602519311.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:19:59
Heat of formation + Delta-G solvation = -63.874244 kcal
Electronic energy + Delta-G solvation = -27130.357267 eV
Core-core repulsion = 23222.392743 eV
Total energy + Delta-G solvation = -3907.964524 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.77738 -39.80243 -38.03474 -36.69808 -35.79845 -34.18698 -32.20720 -31.80102
-30.97081 -30.33923 -28.30874 -27.50736 -26.13764 -24.22921 -23.50086 -22.72537
-21.90853 -21.64730 -20.81098 -19.16797 -18.34735 -17.53251 -16.89576 -16.75377
-16.63249 -16.12593 -15.92950 -15.67505 -15.09794 -14.78684 -14.62888 -14.26451
-14.19613 -14.05711 -13.80999 -13.44453 -13.14290 -13.08978 -12.75230 -12.59140
-12.45352 -12.40948 -12.09748 -12.04709 -11.71754 -11.62628 -11.52617 -11.35864
-11.10079 -10.91044 -10.65369 -10.34084 -10.32394 -9.87757 -9.68933 -9.61744
-9.44698 -9.06173 -9.00283 -8.47524 -8.41194 -8.16774 -5.97948 -3.94684
1.09425 1.26944 2.06031 2.08019 3.20656 3.34563 3.41920 3.45755
3.53507 4.05858 4.37761 4.41921 4.46099 4.49141 4.50595 4.54389
4.62952 4.67728 4.73734 4.86771 5.10785 5.19174 5.21974 5.30328
5.31389 5.35744 5.43158 5.48167 5.58773 5.66980 5.79603 5.80027
5.88245 6.04913 6.07497 6.22648 6.33589 6.44272 6.47798 6.52740
6.63812 6.82942 6.89210 7.08335 7.10890 7.18107 7.26452 7.34408
7.51837 7.61163 7.64517 7.87144 8.61935 9.08102 9.65039 11.15553
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.016902 B = 0.001643 C = 0.001556
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1656.180680 B =17040.895623 C =17990.347732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.115 3.885
3 N -0.731 5.731
4 C 0.514 3.486
5 O -0.512 6.512
6 C 0.043 3.957
7 O -0.291 6.291
8 C 0.125 3.875
9 C -0.213 4.213
10 C -0.082 4.082
11 C -0.132 4.132
12 C -0.035 4.035
13 C 0.095 3.905
14 N -0.681 5.681
15 C 0.061 3.939
16 C -0.074 4.074
17 H 0.060 0.940
18 C -0.124 4.124
19 C -0.009 4.009
20 C -0.512 4.512
21 H 0.074 0.926
22 C 0.065 3.935
23 N -0.906 5.906
24 Si 0.878 3.122
25 H -0.279 1.279
26 H -0.289 1.289
27 H -0.266 1.266
28 C -0.141 4.141
29 H 0.063 0.937
30 H 0.076 0.924
31 H 0.062 0.938
32 H 0.070 0.930
33 H 0.069 0.931
34 H 0.402 0.598
35 H 0.092 0.908
36 H 0.093 0.907
37 H 0.124 0.876
38 H 0.125 0.875
39 H 0.127 0.873
40 H 0.082 0.918
41 H 0.038 0.962
42 H 0.341 0.659
43 H 0.067 0.933
44 H 0.025 0.975
45 H 0.058 0.942
46 H 0.044 0.956
47 H 0.039 0.961
48 H 0.016 0.984
49 H 0.008 0.992
50 H 0.262 0.738
51 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -33.718 -3.096 16.839 37.816
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.008 4.008
3 N -0.386 5.386
4 C 0.298 3.702
5 O -0.385 6.385
6 C -0.036 4.036
7 O -0.203 6.203
8 C 0.080 3.920
9 C -0.232 4.232
10 C -0.100 4.100
11 C -0.150 4.150
12 C -0.036 4.036
13 C -0.034 4.034
14 N -0.312 5.312
15 C -0.067 4.067
16 C -0.093 4.093
17 H 0.078 0.922
18 C -0.181 4.181
19 C -0.047 4.047
20 C -0.550 4.550
21 H 0.092 0.908
22 C -0.136 4.136
23 N -0.545 5.545
24 Si 0.706 3.294
25 H -0.205 1.205
26 H -0.215 1.215
27 H -0.191 1.191
28 C -0.160 4.160
29 H 0.082 0.918
30 H 0.095 0.905
31 H 0.081 0.919
32 H 0.088 0.912
33 H 0.088 0.912
34 H 0.236 0.764
35 H 0.110 0.890
36 H 0.111 0.889
37 H 0.142 0.858
38 H 0.143 0.857
39 H 0.145 0.855
40 H 0.100 0.900
41 H 0.056 0.944
42 H 0.159 0.841
43 H 0.086 0.914
44 H 0.043 0.957
45 H 0.077 0.923
46 H 0.063 0.937
47 H 0.058 0.942
48 H 0.034 0.966
49 H 0.026 0.974
50 H 0.071 0.929
51 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -32.944 -3.319 16.665 37.068
hybrid contribution 0.450 -0.401 0.862 1.052
sum -32.495 -3.720 17.527 37.107
Atomic orbital electron populations
1.22012 0.94088 1.03556 1.02632 1.21348 0.94396 0.82259 1.02841
1.45877 1.06449 1.09479 1.76785 1.20123 0.82598 0.90568 0.76883
1.90789 1.55022 1.45833 1.46883 1.22398 0.81897 0.95455 1.03873
1.86155 1.18218 1.26991 1.88979 1.18929 0.92267 0.83502 0.97334
1.21158 0.99593 0.92493 1.09986 1.20917 0.94674 0.96826 0.97566
1.20994 0.93429 0.98354 1.02260 1.19658 0.95626 0.91971 0.96313
1.20914 0.89503 1.01491 0.91521 1.60555 1.11037 1.48456 1.11132
1.22209 0.85463 0.99969 0.99103 1.21013 0.97661 0.98532 0.92121
0.92189 1.21592 0.99090 0.96429 1.01019 1.19614 0.91101 0.96043
0.97935 1.21142 0.92646 1.49813 0.91419 0.90829 1.25026 0.98523
0.94799 0.95235 1.69914 1.15421 1.51391 1.17776 0.86805 0.81014
0.78486 0.83118 1.20460 1.21490 1.19070 1.20336 0.91203 0.98442
1.06015 0.91811 0.90508 0.91867 0.91155 0.91222 0.76396 0.88990
0.88878 0.85819 0.85736 0.85537 0.89996 0.94355 0.84088 0.91423
0.95674 0.92279 0.93664 0.94233 0.96600 0.97384 0.92866 0.85215
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.32 10.03 37.15 0.37 0.05 16
2 C 0.11 0.55 6.39 -4.04 -0.03 0.53 16
3 N -0.73 -3.56 5.56 -60.29 -0.33 -3.90 16
4 C 0.51 4.50 7.91 -10.99 -0.09 4.41 16
5 O -0.51 -7.18 16.50 -14.36 -0.24 -7.42 16
6 C 0.04 0.30 5.22 36.01 0.19 0.48 16
7 O -0.29 -3.36 9.67 -39.32 -0.38 -3.74 16
8 C 0.12 1.38 6.69 -39.21 -0.26 1.12 16
9 C -0.21 -1.88 9.04 -39.43 -0.36 -2.23 16
10 C -0.08 -0.73 10.04 -39.61 -0.40 -1.12 16
11 C -0.13 -1.37 9.70 -39.56 -0.38 -1.75 16
12 C -0.04 -0.40 5.39 -104.64 -0.56 -0.97 16
13 C 0.09 1.13 5.81 -4.98 -0.03 1.10 16
14 N -0.68 -9.68 5.94 -115.06 -0.68 -10.37 16
15 C 0.06 1.00 5.08 -3.82 -0.02 0.98 16
16 C -0.07 -1.49 2.48 -90.62 -0.22 -1.71 16
17 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
18 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16
19 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16
20 C -0.51 -14.70 8.96 -34.44 -0.31 -15.01 16
21 H 0.07 2.27 7.30 -52.49 -0.38 1.89 16
22 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16
23 N -0.91 -28.34 13.96 55.43 0.77 -27.56 16
24 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16
25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
27 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16
28 C -0.14 -1.67 9.64 -39.43 -0.38 -2.05 16
29 H 0.06 0.10 8.14 -51.93 -0.42 -0.33 16
30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16
31 H 0.06 0.09 8.14 -51.93 -0.42 -0.34 16
32 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16
33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.40 0.57 8.47 -40.82 -0.35 0.23 16
35 H 0.09 0.38 7.66 -51.93 -0.40 -0.01 16
36 H 0.09 0.43 7.66 -51.93 -0.40 0.03 16
37 H 0.12 0.70 6.30 -52.49 -0.33 0.37 16
38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16
39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16
40 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16
41 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16
42 H 0.34 4.85 8.72 -39.29 -0.34 4.50 16
43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
44 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16
45 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16
46 H 0.04 0.80 7.75 -51.93 -0.40 0.39 16
47 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
48 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16
49 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16
50 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16
51 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16
LS Contribution 417.61 15.07 6.29 6.29
Total: -1.00 -35.92 417.61 -10.39 -46.31
By element:
Atomic # 1 Polarization: 8.50 SS G_CDS: -8.81 Total: -0.31 kcal
Atomic # 6 Polarization: -14.42 SS G_CDS: -2.34 Total: -16.77 kcal
Atomic # 7 Polarization: -41.58 SS G_CDS: -0.25 Total: -41.83 kcal
Atomic # 8 Polarization: -10.54 SS G_CDS: -0.62 Total: -11.15 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal
Total LS contribution 6.29 Total: 6.29 kcal
Total: -35.92 -10.39 -46.31 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602519311.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.567 kcal
(2) G-P(sol) polarization free energy of solvation -35.918 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.484 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.307 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds