Wall clock time and date at job start Tue Mar 31 2020 19:19:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46501 * 109.47144 * 2 1
4 4 C 1.34772 * 120.00009 * 179.97438 * 3 2 1
5 5 O 1.21284 * 120.00290 * 0.02562 * 4 3 2
6 6 C 1.50704 * 120.00124 * 180.02562 * 4 3 2
7 7 O 1.42903 * 109.47252 * 180.02562 * 6 4 3
8 8 C 1.35896 * 116.99811 * 180.02562 * 7 6 4
9 9 C 1.38755 * 120.05772 * 0.02562 * 8 7 6
10 10 C 1.38123 * 119.94386 * 179.97438 * 9 8 7
11 11 C 1.38284 * 120.05592 * 359.74654 * 10 9 8
12 12 C 1.38246 * 120.11084 * 0.51067 * 11 10 9
13 13 C 1.50706 * 119.97383 * 179.76405 * 12 11 10
14 14 N 1.46893 * 109.47176 * 269.72831 * 13 12 11
15 15 C 1.46903 * 110.99924 * 179.97438 * 14 13 12
16 16 C 1.53003 * 109.47090 * 179.97438 * 15 14 13
17 17 H 1.09001 * 109.47116 * 304.99858 * 16 15 14
18 18 C 1.53000 * 109.47203 * 65.00075 * 16 15 14
19 19 C 1.52996 * 109.47118 * 184.99777 * 16 15 14
20 20 C 1.50703 * 109.47343 * 175.00132 * 19 16 15
21 21 H 1.07997 * 119.99829 * 0.02562 * 20 19 16
22 22 C 1.37874 * 120.00190 * 180.02562 * 20 19 16
23 23 N 1.31515 * 120.00148 * 179.97438 * 22 20 19
24 24 Si 1.86803 * 120.00154 * 0.02562 * 22 20 19
25 25 H 1.48500 * 109.47431 * 89.99740 * 24 22 20
26 26 H 1.48492 * 109.47201 * 210.00404 * 24 22 20
27 27 H 1.48503 * 109.46831 * 329.99961 * 24 22 20
28 28 C 1.38167 * 120.05898 * 359.49012 * 12 11 10
29 29 H 1.09000 * 109.47478 * 59.99424 * 1 2 3
30 30 H 1.09002 * 109.47581 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46994 * 299.99176 * 1 2 3
32 32 H 1.09010 * 109.46873 * 240.00542 * 2 1 3
33 33 H 1.09000 * 109.47478 * 120.00576 * 2 1 3
34 34 H 0.96996 * 119.99662 * 0.02562 * 3 2 1
35 35 H 1.09001 * 109.46754 * 60.00279 * 6 4 3
36 36 H 1.09000 * 109.47036 * 300.00447 * 6 4 3
37 37 H 1.07995 * 120.02737 * 359.95989 * 9 8 7
38 38 H 1.07995 * 119.96781 * 180.02562 * 10 9 8
39 39 H 1.07999 * 119.94679 * 180.27649 * 11 10 9
40 40 H 1.09001 * 109.46953 * 29.72291 * 13 12 11
41 41 H 1.09000 * 109.47318 * 149.71889 * 13 12 11
42 42 H 1.00904 * 110.99720 * 303.94906 * 14 13 12
43 43 H 1.08993 * 109.46933 * 299.99334 * 15 14 13
44 44 H 1.09003 * 109.46864 * 60.00013 * 15 14 13
45 45 H 1.08993 * 109.47273 * 180.02562 * 18 16 15
46 46 H 1.08999 * 109.46977 * 299.99935 * 18 16 15
47 47 H 1.09001 * 109.46807 * 59.99593 * 18 16 15
48 48 H 1.09003 * 109.47123 * 295.00294 * 19 16 15
49 49 H 1.09001 * 109.47187 * 55.00114 * 19 16 15
50 50 H 0.96994 * 120.00210 * 179.97438 * 23 22 20
51 51 H 1.07994 * 120.03098 * 180.23012 * 28 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 3.3433 1.6275 0.0005
5 8 4.1315 0.7057 0.0005
6 6 3.8457 3.0483 0.0011
7 8 5.2747 3.0483 0.0010
8 6 5.8916 4.2592 0.0020
9 6 5.1371 5.4236 0.0036
10 6 5.7665 6.6531 0.0052
11 6 7.1475 6.7241 0.0105
12 6 7.9016 5.5654 0.0035
13 6 9.4065 5.6465 0.0039
14 7 9.8957 5.6745 -1.3809
15 6 11.3620 5.7541 -1.4197
16 6 11.8330 5.7806 -2.8752
17 1 11.4306 4.9160 -3.4031
18 6 11.3401 7.0636 -3.5475
19 6 13.3618 5.7378 -2.9174
20 6 13.8223 5.6400 -4.3490
21 1 13.0971 5.6117 -5.1488
22 6 15.1695 5.5867 -4.6378
23 7 15.5713 5.5008 -5.8870
24 14 16.4238 5.6349 -3.2544
25 1 16.7187 4.2506 -2.8050
26 1 17.6728 6.2741 -3.7408
27 1 15.8771 6.4185 -2.1176
28 6 7.2768 4.3331 0.0019
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5137 0.8901
32 1 1.8933 -0.5138 -0.8901
33 1 1.8933 -0.5139 0.8899
34 1 1.3879 2.1184 0.0004
35 1 3.4821 3.5618 0.8912
36 1 3.4826 3.5624 -0.8888
37 1 4.0585 5.3687 0.0034
38 1 5.1796 7.5596 0.0069
39 1 7.6379 7.6863 0.0162
40 1 9.7213 6.5541 0.5188
41 1 9.8171 4.7768 0.5168
42 1 9.5629 4.8746 -1.8982
43 1 11.6900 6.6627 -0.9149
44 1 11.7865 4.8853 -0.9166
45 1 11.6752 7.0822 -4.5845
46 1 10.2509 7.0941 -3.5175
47 1 11.7425 7.9281 -3.0196
48 1 13.7633 6.6460 -2.4678
49 1 13.7164 4.8698 -2.3616
50 1 16.5190 5.4637 -6.0902
51 1 7.8663 3.4282 0.0002
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602519311.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:19:58
Heat of formation + Delta-G solvation = -88.283703 kcal
Electronic energy + Delta-G solvation = -27131.415740 eV
Core-core repulsion = 23222.392743 eV
Total energy + Delta-G solvation = -3909.022997 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.47282 -40.50583 -38.91959 -37.97364 -36.37875 -35.65280 -34.12856 -32.35422
-31.93039 -31.08276 -29.38561 -28.84217 -27.35759 -25.58958 -23.95914 -23.68403
-23.33867 -22.37957 -21.51396 -20.75468 -19.12076 -18.87856 -18.16770 -17.48873
-17.34047 -16.93217 -16.63833 -16.48675 -16.16861 -16.06299 -15.72826 -15.60074
-15.20281 -14.89234 -14.78001 -14.74090 -14.38409 -14.10144 -13.64566 -13.53981
-13.35316 -13.34410 -13.11739 -13.00954 -12.81558 -12.71962 -12.44317 -12.41107
-12.31711 -12.11485 -12.01641 -11.88230 -11.75313 -11.44664 -11.19876 -11.04347
-11.02859 -10.73041 -10.23002 -9.86092 -9.30629 -9.15230 -8.25620 -6.28082
0.34699 0.51443 1.36222 1.37850 1.42112 1.49927 1.53042 2.38201
2.63506 2.76234 3.09620 3.43877 3.57323 3.83652 3.91007 4.02631
4.08245 4.10583 4.11052 4.19080 4.20640 4.26862 4.37240 4.45599
4.49583 4.50015 4.55233 4.68929 4.80547 4.87980 4.90870 4.91894
4.96736 5.03701 5.10166 5.11638 5.25947 5.32266 5.34959 5.39636
5.42485 5.50732 5.56124 5.69915 5.72166 5.73716 5.80177 6.07918
6.32964 6.35110 6.42520 6.49453 6.79538 7.11337 7.35425 8.91267
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.016902 B = 0.001643 C = 0.001556
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1656.180680 B =17040.895623 C =17990.347732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.110 3.890
3 N -0.709 5.709
4 C 0.508 3.492
5 O -0.578 6.578
6 C 0.038 3.962
7 O -0.324 6.324
8 C 0.113 3.887
9 C -0.205 4.205
10 C -0.079 4.079
11 C -0.142 4.142
12 C -0.046 4.046
13 C 0.098 3.902
14 N -0.682 5.682
15 C 0.074 3.926
16 C -0.072 4.072
17 H 0.046 0.954
18 C -0.114 4.114
19 C -0.006 4.006
20 C -0.520 4.520
21 H 0.033 0.967
22 C 0.001 3.999
23 N -0.954 5.954
24 Si 0.949 3.051
25 H -0.270 1.270
26 H -0.285 1.285
27 H -0.245 1.245
28 C -0.165 4.165
29 H 0.073 0.927
30 H 0.081 0.919
31 H 0.074 0.926
32 H 0.054 0.946
33 H 0.056 0.944
34 H 0.422 0.578
35 H 0.127 0.873
36 H 0.123 0.877
37 H 0.161 0.839
38 H 0.156 0.844
39 H 0.135 0.865
40 H 0.092 0.908
41 H 0.038 0.962
42 H 0.339 0.661
43 H 0.076 0.924
44 H 0.027 0.973
45 H 0.025 0.975
46 H 0.064 0.936
47 H 0.046 0.954
48 H 0.021 0.979
49 H 0.013 0.987
50 H 0.264 0.736
51 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -36.208 -1.361 19.317 41.061
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.014 4.014
3 N -0.365 5.365
4 C 0.294 3.706
5 O -0.457 6.457
6 C -0.039 4.039
7 O -0.238 6.238
8 C 0.068 3.932
9 C -0.223 4.223
10 C -0.097 4.097
11 C -0.161 4.161
12 C -0.046 4.046
13 C -0.030 4.030
14 N -0.312 5.312
15 C -0.054 4.054
16 C -0.091 4.091
17 H 0.064 0.936
18 C -0.171 4.171
19 C -0.044 4.044
20 C -0.558 4.558
21 H 0.051 0.949
22 C -0.195 4.195
23 N -0.596 5.596
24 Si 0.773 3.227
25 H -0.195 1.195
26 H -0.211 1.211
27 H -0.169 1.169
28 C -0.184 4.184
29 H 0.092 0.908
30 H 0.100 0.900
31 H 0.093 0.907
32 H 0.072 0.928
33 H 0.074 0.926
34 H 0.260 0.740
35 H 0.144 0.856
36 H 0.141 0.859
37 H 0.178 0.822
38 H 0.173 0.827
39 H 0.153 0.847
40 H 0.110 0.890
41 H 0.056 0.944
42 H 0.157 0.843
43 H 0.095 0.905
44 H 0.045 0.955
45 H 0.044 0.956
46 H 0.083 0.917
47 H 0.065 0.935
48 H 0.039 0.961
49 H 0.032 0.968
50 H 0.073 0.927
51 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -35.518 -1.552 19.158 40.385
hybrid contribution 1.046 -0.969 0.016 1.426
sum -34.472 -2.522 19.174 39.526
Atomic orbital electron populations
1.21957 0.91357 1.04293 1.03643 1.21413 0.96500 0.81995 1.01466
1.45775 1.05659 1.10356 1.74685 1.20628 0.83202 0.90878 0.75849
1.90762 1.56816 1.47763 1.50317 1.22718 0.79884 0.94515 1.06811
1.86111 1.20770 1.27701 1.89197 1.19072 0.92165 0.84246 0.97740
1.21540 1.01342 0.91383 1.08075 1.21305 0.94269 0.98085 0.96003
1.21212 0.94425 0.98137 1.02293 1.19587 0.95196 0.92315 0.97547
1.20918 0.90179 1.01921 0.90005 1.60515 1.09467 1.48468 1.12777
1.21940 0.86932 1.00542 0.96032 1.20900 0.95086 0.98218 0.94857
0.93594 1.21480 1.00280 0.96464 0.98920 1.19564 0.93921 0.96228
0.94696 1.21466 0.92194 1.49127 0.93026 0.94886 1.26008 1.01013
0.94466 0.98007 1.70076 1.16075 1.53049 1.20367 0.85676 0.77913
0.79155 0.79996 1.19519 1.21072 1.16863 1.20381 0.92183 0.98212
1.07657 0.90843 0.89985 0.90688 0.92782 0.92577 0.73996 0.85563
0.85919 0.82180 0.82661 0.84732 0.89010 0.94393 0.84306 0.90518
0.95461 0.95566 0.91700 0.93482 0.96085 0.96842 0.92694 0.86766
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.31 10.03 71.98 0.72 0.41 16
2 C 0.11 1.01 6.39 86.38 0.55 1.56 16
3 N -0.71 -5.90 5.56 -463.06 -2.57 -8.47 16
4 C 0.51 8.63 7.91 87.66 0.69 9.33 16
5 O -0.58 -17.06 16.50 16.00 0.26 -16.80 16
6 C 0.04 0.45 5.22 71.24 0.37 0.82 16
7 O -0.32 -7.33 9.67 -73.35 -0.71 -8.04 16
8 C 0.11 2.36 6.69 22.51 0.15 2.51 16
9 C -0.20 -2.91 9.04 22.37 0.20 -2.70 16
10 C -0.08 -1.12 10.04 22.25 0.22 -0.90 16
11 C -0.14 -2.62 9.70 22.28 0.22 -2.40 16
12 C -0.05 -1.01 5.39 -19.88 -0.11 -1.12 16
13 C 0.10 2.24 5.81 85.56 0.50 2.74 16
14 N -0.68 -18.64 5.94 -517.93 -3.08 -21.72 16
15 C 0.07 2.33 5.08 86.30 0.44 2.77 16
16 C -0.07 -2.85 2.48 -10.79 -0.03 -2.88 16
17 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
18 C -0.11 -4.43 8.89 71.98 0.64 -3.79 16
19 C -0.01 -0.30 3.52 29.85 0.10 -0.19 16
20 C -0.52 -30.65 8.96 25.60 0.23 -30.42 16
21 H 0.03 2.15 7.30 -2.91 -0.02 2.13 16
22 C 0.00 0.06 5.47 84.65 0.46 0.53 16
23 N -0.95 -61.41 13.96 21.45 0.30 -61.11 16
24 Si 0.95 45.42 27.47 68.60 1.88 47.30 16
25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16
26 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16
27 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16
28 C -0.16 -3.94 9.64 22.37 0.22 -3.72 16
29 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16
30 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16
31 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16
32 H 0.05 0.68 8.14 -2.38 -0.02 0.67 16
33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
34 H 0.42 -0.03 8.47 -92.71 -0.79 -0.82 16
35 H 0.13 0.58 7.66 -2.39 -0.02 0.56 16
36 H 0.12 0.68 7.66 -2.39 -0.02 0.66 16
37 H 0.16 0.98 6.30 -2.91 -0.02 0.97 16
38 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16
39 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16
40 H 0.09 1.90 8.08 -2.39 -0.02 1.88 16
41 H 0.04 0.87 8.08 -2.39 -0.02 0.85 16
42 H 0.34 9.56 8.72 -89.69 -0.78 8.78 16
43 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16
44 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16
45 H 0.03 1.15 6.95 -2.39 -0.02 1.13 16
46 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16
47 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16
48 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16
49 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16
50 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16
51 H 0.11 2.93 8.06 -2.91 -0.02 2.91 16
Total: -1.00 -82.40 417.61 0.97 -81.43
By element:
Atomic # 1 Polarization: 15.57 SS G_CDS: -0.70 Total: 14.87 kcal
Atomic # 6 Polarization: -33.05 SS G_CDS: 5.59 Total: -27.46 kcal
Atomic # 7 Polarization: -85.95 SS G_CDS: -5.35 Total: -91.30 kcal
Atomic # 8 Polarization: -24.39 SS G_CDS: -0.45 Total: -24.84 kcal
Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal
Total: -82.40 0.97 -81.43 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602519311.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.852 kcal
(2) G-P(sol) polarization free energy of solvation -82.400 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.252 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.432 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.284 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds