Wall clock time and date at job start Tue Mar 31 2020 18:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47013 * 2 1 4 4 C 1.46497 * 120.00035 * 270.00149 * 3 2 1 5 5 C 1.50704 * 109.47141 * 270.00138 * 4 3 2 6 6 H 1.08001 * 119.99902 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99824 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99716 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00379 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47085 * 90.00045 * 9 7 5 11 11 H 1.48496 * 109.47161 * 210.00518 * 9 7 5 12 12 H 1.48505 * 109.46758 * 330.00209 * 9 7 5 13 13 C 1.34777 * 119.99992 * 89.99898 * 3 2 1 14 14 O 1.21278 * 119.99886 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00007 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.46900 * 175.84028 * 15 13 3 17 17 C 1.46903 * 110.99500 * 171.10373 * 16 15 13 18 18 C 1.50698 * 109.46819 * 196.54841 * 17 16 15 19 19 C 1.38238 * 120.00394 * 274.18418 * 18 17 16 20 20 C 1.38231 * 120.00422 * 179.76333 * 19 18 17 21 21 C 1.38234 * 119.99879 * 0.50921 * 20 19 18 22 22 C 1.38236 * 119.99886 * 359.74309 * 21 20 19 23 23 C 1.38236 * 120.00012 * 94.45207 * 18 17 16 24 24 C 1.46897 * 110.99874 * 295.05382 * 16 15 13 25 25 C 1.52994 * 109.47642 * 308.91110 * 24 16 15 26 26 H 1.08997 * 109.47373 * 52.15936 * 25 24 16 27 27 C 1.52994 * 109.47390 * 172.16335 * 25 24 16 28 28 O 1.42903 * 109.47230 * 292.16416 * 25 24 16 29 29 H 1.09003 * 109.47434 * 300.00008 * 1 2 3 30 30 H 1.09001 * 109.47678 * 60.00244 * 1 2 3 31 31 H 1.09007 * 109.46898 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47434 * 239.99992 * 2 1 3 33 33 H 1.09001 * 109.47678 * 119.99756 * 2 1 3 34 34 H 1.09002 * 109.47004 * 29.99405 * 4 3 2 35 35 H 1.09002 * 109.47442 * 149.99752 * 4 3 2 36 36 H 0.96994 * 120.00019 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46729 * 55.84159 * 15 13 3 38 38 H 1.08998 * 109.47080 * 295.84341 * 15 13 3 39 39 H 1.09002 * 109.47476 * 316.54566 * 17 16 15 40 40 H 1.09000 * 109.47424 * 76.55158 * 17 16 15 41 41 H 1.08007 * 119.99694 * 359.97438 * 19 18 17 42 42 H 1.08002 * 120.00305 * 180.22932 * 20 19 18 43 43 H 1.07995 * 120.00439 * 179.72225 * 21 20 19 44 44 H 1.08003 * 119.99856 * 179.97438 * 22 21 20 45 45 H 1.08000 * 120.00072 * 0.02562 * 23 18 17 46 46 H 1.08998 * 109.46869 * 68.91394 * 24 16 15 47 47 H 1.09004 * 109.46689 * 188.90764 * 24 16 15 48 48 H 1.08997 * 109.47535 * 60.00185 * 27 25 24 49 49 H 1.09005 * 109.47098 * 180.02562 * 27 25 24 50 50 H 1.08996 * 109.47094 * 299.99810 * 27 25 24 51 51 H 0.96697 * 113.99904 * 291.98859 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1492 2.3906 -2.8775 8 7 5.3915 2.1843 -3.2569 9 14 3.0129 3.4361 -3.9287 10 1 3.1156 4.8562 -3.5069 11 1 3.4065 3.3138 -5.3554 12 1 1.6133 2.9694 -3.7596 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.4040 2.1697 3.5870 17 6 1.9832 1.6029 4.8753 18 6 2.0475 2.6692 5.9382 19 6 3.2354 2.9127 6.6021 20 6 3.2956 3.8941 7.5737 21 6 2.1654 4.6250 7.8888 22 6 0.9763 4.3780 7.2286 23 6 0.9173 3.4001 6.2533 24 6 3.8539 2.4042 3.5635 25 6 4.5856 1.0648 3.4572 26 1 4.1844 0.4971 2.6177 27 6 6.0787 1.3153 3.2364 28 8 4.4005 0.3237 4.6650 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5816 1.6877 -2.0284 35 1 2.0954 3.1411 -1.1384 36 1 5.7175 2.5748 -4.0828 37 1 2.5673 0.3804 2.4982 38 1 0.9305 1.0768 2.5632 39 1 0.9612 1.2330 4.7931 40 1 2.6465 0.7809 5.1446 41 1 4.1172 2.3383 6.3593 42 1 4.2246 4.0868 8.0898 43 1 2.2113 5.3887 8.6510 44 1 0.0931 4.9487 7.4751 45 1 -0.0119 3.2067 5.7380 46 1 4.1075 3.0259 2.7048 47 1 4.1549 2.9110 4.4804 48 1 6.4800 1.8829 4.0760 49 1 6.5999 0.3610 3.1602 50 1 6.2199 1.8805 2.3152 51 1 4.8408 0.7096 5.4346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610161303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:46 Heat of formation + Delta-G solvation = -41.357728 kcal Electronic energy + Delta-G solvation = -30379.797052 eV Core-core repulsion = 26472.808918 eV Total energy + Delta-G solvation = -3906.988134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17244 -39.07765 -38.03876 -35.74198 -35.14241 -32.74221 -32.08329 -31.00803 -30.87770 -30.31602 -28.62047 -26.77983 -26.60576 -23.56640 -22.97290 -22.71632 -22.19363 -21.47405 -20.49523 -18.26294 -16.97788 -16.87782 -16.63577 -16.48521 -16.32504 -15.55573 -15.45738 -15.08121 -14.68607 -14.54137 -14.39358 -14.14348 -13.61717 -13.46676 -13.42733 -13.22400 -12.87710 -12.61710 -12.53652 -12.30508 -12.13322 -12.04044 -11.91932 -11.78256 -11.65926 -11.39365 -11.20694 -11.03529 -10.97112 -10.93438 -10.77283 -10.66345 -10.49956 -10.35249 -10.13324 -9.54004 -8.96443 -8.90118 -8.81086 -8.58831 -7.80565 -7.67819 -6.09276 -4.07581 1.29981 1.35954 3.29285 3.35178 3.37612 3.38682 3.53830 3.85681 4.17303 4.38459 4.40054 4.76636 4.80335 4.87585 4.94923 4.99617 5.04879 5.08670 5.18612 5.25467 5.27142 5.33279 5.41583 5.46224 5.50912 5.57554 5.60196 5.66383 5.75695 5.78871 5.89410 5.98066 5.99007 6.05143 6.15263 6.18154 6.20946 6.31967 6.39632 6.40539 6.44899 6.61706 6.71056 6.93902 6.96370 7.08473 7.21387 7.39597 7.51129 7.61972 8.29954 8.47291 8.92784 9.05740 9.51826 11.04049 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.003247 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.342492 B = 8620.971860 C = 8918.520470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.030 3.970 16 N -0.505 5.505 17 C 0.064 3.936 18 C -0.061 4.061 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.103 4.103 24 C 0.015 3.985 25 C 0.059 3.941 26 H 0.104 0.896 27 C -0.182 4.182 28 O -0.560 6.560 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.109 0.891 47 H 0.078 0.922 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.076 0.924 51 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.159 -3.260 20.388 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.328 5.328 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.398 6.398 15 C -0.101 4.101 16 N -0.227 5.227 17 C -0.062 4.062 18 C -0.062 4.062 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.139 4.139 23 C -0.122 4.122 24 C -0.113 4.113 25 C -0.001 4.001 26 H 0.121 0.879 27 C -0.240 4.240 28 O -0.367 6.367 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.127 0.873 47 H 0.097 0.903 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.095 0.905 51 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.408 -2.525 19.745 21.240 hybrid contribution 0.274 0.169 -0.366 0.488 sum -7.134 -2.356 19.379 20.784 Atomic orbital electron populations 1.22232 0.96769 1.01539 1.02260 1.21441 0.93450 0.83985 1.02973 1.47949 1.64581 1.13287 1.06976 1.19618 0.97188 0.93391 0.80115 1.21319 0.95340 1.32748 1.07067 0.90868 1.24849 0.94969 0.95805 0.97361 1.69896 1.15125 1.45083 1.23591 0.86858 0.81513 0.81643 0.79730 1.19922 1.21139 1.19082 1.20169 0.78638 0.87074 0.84687 1.90637 1.44610 1.17771 1.86794 1.22191 1.02024 0.95233 0.90626 1.61912 1.14186 1.45975 1.00622 1.21546 1.01959 0.95049 0.87680 1.19792 0.93367 0.97130 0.95873 1.21009 0.97199 0.98463 0.96619 1.21094 0.98336 0.96496 0.98116 1.21089 0.93213 0.99916 1.00305 1.21134 0.97905 0.98095 0.96798 1.21059 0.98446 0.95581 0.97066 1.23147 0.86625 0.96515 1.05008 1.22836 0.95769 0.94128 0.87326 0.87875 1.22412 0.95874 1.02510 1.03200 1.86534 1.76321 1.54922 1.18884 0.92959 0.92215 0.92018 0.89773 0.91608 0.95398 0.94628 0.92609 0.91647 0.88642 0.90902 0.89424 0.86660 0.86370 0.86488 0.86356 0.86199 0.87280 0.90331 0.92531 0.91933 0.90546 0.78449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.15 0.38 -1.75 16 2 C 0.11 1.62 5.96 -4.04 -0.02 1.60 16 3 N -0.60 -11.96 2.46 -175.06 -0.43 -12.39 16 4 C 0.22 5.27 4.23 -5.19 -0.02 5.24 16 5 C -0.53 -14.88 9.94 -34.44 -0.34 -15.22 16 6 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 9 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.51 10.14 7.37 -10.98 -0.08 10.06 16 14 O -0.52 -12.60 14.00 5.56 0.08 -12.52 16 15 C 0.03 0.45 3.65 -4.97 -0.02 0.43 16 16 N -0.50 -7.40 4.38 -237.52 -1.04 -8.44 16 17 C 0.06 0.76 5.02 -4.98 -0.02 0.74 16 18 C -0.06 -0.71 5.18 -104.62 -0.54 -1.25 16 19 C -0.11 -1.20 8.09 -39.58 -0.32 -1.52 16 20 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 21 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.10 -1.17 9.68 -39.58 -0.38 -1.55 16 24 C 0.02 0.22 4.65 -3.83 -0.02 0.20 16 25 C 0.06 0.78 3.21 -26.74 -0.09 0.69 16 26 H 0.10 1.59 5.74 -51.93 -0.30 1.29 16 27 C -0.18 -2.31 9.46 37.15 0.35 -1.96 16 28 O -0.56 -6.25 10.30 -35.23 -0.36 -6.61 16 29 H 0.05 0.62 7.35 -51.93 -0.38 0.24 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.07 0.86 6.33 -51.93 -0.33 0.53 16 34 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 35 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.07 0.93 4.76 -51.93 -0.25 0.68 16 38 H 0.10 1.24 7.09 -51.93 -0.37 0.87 16 39 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 40 H 0.09 1.00 4.80 -51.93 -0.25 0.75 16 41 H 0.12 1.01 5.83 -52.48 -0.31 0.70 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 45 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 46 H 0.11 2.05 6.13 -51.93 -0.32 1.73 16 47 H 0.08 1.04 5.15 -51.93 -0.27 0.77 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 51 H 0.37 2.92 7.51 45.56 0.34 3.26 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -33.97 395.37 -9.48 -43.45 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.36 Total: 7.48 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -2.42 Total: -7.16 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.70 Total: -47.51 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.29 Total: -19.13 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.97 -9.48 -43.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610161303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.089 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds