Wall clock time and date at job start Tue Mar 31 2020 18:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47013 * 2 1 4 4 C 1.46497 * 120.00035 * 270.00149 * 3 2 1 5 5 C 1.50704 * 109.47141 * 270.00138 * 4 3 2 6 6 H 1.08001 * 119.99902 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99824 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99716 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00379 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47085 * 90.00045 * 9 7 5 11 11 H 1.48496 * 109.47161 * 210.00518 * 9 7 5 12 12 H 1.48505 * 109.46758 * 330.00209 * 9 7 5 13 13 C 1.34777 * 119.99992 * 89.99898 * 3 2 1 14 14 O 1.21278 * 119.99886 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00007 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.46900 * 175.84028 * 15 13 3 17 17 C 1.46903 * 110.99500 * 171.10373 * 16 15 13 18 18 C 1.50698 * 109.46819 * 196.54841 * 17 16 15 19 19 C 1.38238 * 120.00394 * 274.18418 * 18 17 16 20 20 C 1.38231 * 120.00422 * 179.76333 * 19 18 17 21 21 C 1.38234 * 119.99879 * 0.50921 * 20 19 18 22 22 C 1.38236 * 119.99886 * 359.74309 * 21 20 19 23 23 C 1.38236 * 120.00012 * 94.45207 * 18 17 16 24 24 C 1.46897 * 110.99874 * 295.05382 * 16 15 13 25 25 C 1.52994 * 109.47642 * 308.91110 * 24 16 15 26 26 H 1.08997 * 109.47373 * 52.15936 * 25 24 16 27 27 C 1.52994 * 109.47390 * 172.16335 * 25 24 16 28 28 O 1.42903 * 109.47230 * 292.16416 * 25 24 16 29 29 H 1.09003 * 109.47434 * 300.00008 * 1 2 3 30 30 H 1.09001 * 109.47678 * 60.00244 * 1 2 3 31 31 H 1.09007 * 109.46898 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47434 * 239.99992 * 2 1 3 33 33 H 1.09001 * 109.47678 * 119.99756 * 2 1 3 34 34 H 1.09002 * 109.47004 * 29.99405 * 4 3 2 35 35 H 1.09002 * 109.47442 * 149.99752 * 4 3 2 36 36 H 0.96994 * 120.00019 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46729 * 55.84159 * 15 13 3 38 38 H 1.08998 * 109.47080 * 295.84341 * 15 13 3 39 39 H 1.09002 * 109.47476 * 316.54566 * 17 16 15 40 40 H 1.09000 * 109.47424 * 76.55158 * 17 16 15 41 41 H 1.08007 * 119.99694 * 359.97438 * 19 18 17 42 42 H 1.08002 * 120.00305 * 180.22932 * 20 19 18 43 43 H 1.07995 * 120.00439 * 179.72225 * 21 20 19 44 44 H 1.08003 * 119.99856 * 179.97438 * 22 21 20 45 45 H 1.08000 * 120.00072 * 0.02562 * 23 18 17 46 46 H 1.08998 * 109.46869 * 68.91394 * 24 16 15 47 47 H 1.09004 * 109.46689 * 188.90764 * 24 16 15 48 48 H 1.08997 * 109.47535 * 60.00185 * 27 25 24 49 49 H 1.09005 * 109.47098 * 180.02562 * 27 25 24 50 50 H 1.08996 * 109.47094 * 299.99810 * 27 25 24 51 51 H 0.96697 * 113.99904 * 291.98859 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1492 2.3906 -2.8775 8 7 5.3915 2.1843 -3.2569 9 14 3.0129 3.4361 -3.9287 10 1 3.1156 4.8562 -3.5069 11 1 3.4065 3.3138 -5.3554 12 1 1.6133 2.9694 -3.7596 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.4040 2.1697 3.5870 17 6 1.9832 1.6029 4.8753 18 6 2.0475 2.6692 5.9382 19 6 3.2354 2.9127 6.6021 20 6 3.2956 3.8941 7.5737 21 6 2.1654 4.6250 7.8888 22 6 0.9763 4.3780 7.2286 23 6 0.9173 3.4001 6.2533 24 6 3.8539 2.4042 3.5635 25 6 4.5856 1.0648 3.4572 26 1 4.1844 0.4971 2.6177 27 6 6.0787 1.3153 3.2364 28 8 4.4005 0.3237 4.6650 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5816 1.6877 -2.0284 35 1 2.0954 3.1411 -1.1384 36 1 5.7175 2.5748 -4.0828 37 1 2.5673 0.3804 2.4982 38 1 0.9305 1.0768 2.5632 39 1 0.9612 1.2330 4.7931 40 1 2.6465 0.7809 5.1446 41 1 4.1172 2.3383 6.3593 42 1 4.2246 4.0868 8.0898 43 1 2.2113 5.3887 8.6510 44 1 0.0931 4.9487 7.4751 45 1 -0.0119 3.2067 5.7380 46 1 4.1075 3.0259 2.7048 47 1 4.1549 2.9110 4.4804 48 1 6.4800 1.8829 4.0760 49 1 6.5999 0.3610 3.1602 50 1 6.2199 1.8805 2.3152 51 1 4.8408 0.7096 5.4346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610161303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:45 Heat of formation + Delta-G solvation = -65.096569 kcal Electronic energy + Delta-G solvation = -30380.826445 eV Core-core repulsion = 26472.808918 eV Total energy + Delta-G solvation = -3908.017528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.37097 -40.20573 -39.11482 -37.06280 -36.47093 -34.84968 -33.02350 -32.12063 -31.73227 -31.68897 -30.10603 -28.30608 -27.61281 -24.88559 -24.30507 -23.83376 -23.35463 -22.52884 -21.51035 -19.76979 -19.10083 -18.08955 -17.70372 -17.63293 -17.40865 -16.93182 -16.47407 -16.29427 -16.04641 -15.69350 -15.62663 -15.35080 -14.98812 -14.70689 -14.63750 -14.39814 -14.20507 -13.84855 -13.70340 -13.52128 -13.39915 -13.27328 -13.15909 -12.94674 -12.88157 -12.81633 -12.54780 -12.35855 -12.32682 -12.03420 -11.95346 -11.86324 -11.82406 -11.73918 -11.72531 -11.37859 -10.83082 -10.50136 -9.71759 -9.62224 -9.37409 -8.89030 -8.34168 -6.38203 0.50995 0.59096 1.31247 1.35277 1.43343 1.84660 2.23006 2.30216 2.83714 3.00442 3.19676 3.34900 3.69400 3.74156 3.92233 3.94087 4.06080 4.08389 4.16042 4.24279 4.29381 4.34240 4.38716 4.44414 4.45792 4.56163 4.64363 4.72186 4.76216 4.80386 4.82203 4.92166 4.98999 5.00848 5.02068 5.03882 5.09811 5.14761 5.23477 5.25786 5.38445 5.47345 5.62332 5.67894 5.69669 5.78962 5.96266 6.14463 6.22080 6.26024 6.62509 6.70422 6.76776 7.22927 7.50403 8.82580 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.003247 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.342492 B = 8620.971860 C = 8918.520470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.531 4.531 6 H 0.030 0.970 7 C 0.013 3.987 8 N -0.944 5.944 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.240 1.240 13 C 0.500 3.500 14 O -0.574 6.574 15 C 0.044 3.956 16 N -0.521 5.521 17 C 0.072 3.928 18 C -0.079 4.079 19 C -0.124 4.124 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.120 4.120 24 C 0.024 3.976 25 C 0.074 3.926 26 H 0.080 0.920 27 C -0.179 4.179 28 O -0.555 6.555 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.015 0.985 36 H 0.268 0.732 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.123 0.877 46 H 0.061 0.939 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.067 0.933 50 H 0.041 0.959 51 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 -3.947 22.263 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.105 3.895 5 C -0.569 4.569 6 H 0.048 0.952 7 C -0.185 4.185 8 N -0.585 5.585 9 Si 0.767 3.233 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.163 1.163 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.086 4.086 16 N -0.244 5.244 17 C -0.054 4.054 18 C -0.080 4.080 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.104 4.104 25 C 0.014 3.986 26 H 0.097 0.903 27 C -0.237 4.237 28 O -0.363 6.363 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.142 0.858 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.141 0.859 46 H 0.079 0.921 47 H 0.112 0.888 48 H 0.101 0.899 49 H 0.087 0.913 50 H 0.061 0.939 51 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -9.401 -3.264 21.656 23.834 hybrid contribution 0.967 0.366 -0.821 1.320 sum -8.434 -2.898 20.835 22.664 Atomic orbital electron populations 1.22153 0.93923 1.03624 1.02103 1.21752 0.95704 0.81287 1.03665 1.48062 1.64603 1.15040 1.05762 1.19242 0.94772 0.92857 0.82594 1.21536 0.96964 1.31843 1.06574 0.95199 1.25794 0.96618 0.97168 0.98934 1.70043 1.17294 1.46642 1.24479 0.85767 0.80551 0.79064 0.77898 1.20368 1.19996 1.16325 1.21104 0.77226 0.86705 0.86131 1.90612 1.46753 1.20257 1.87665 1.22102 1.03824 0.94696 0.87993 1.61847 1.13985 1.46737 1.01801 1.21547 1.02595 0.95224 0.86053 1.19880 0.94074 0.97678 0.96351 1.21249 0.97379 0.98873 0.96704 1.21426 0.99325 0.96066 0.97934 1.21436 0.93004 1.00178 1.00496 1.21412 0.98938 0.98003 0.96572 1.21253 0.98707 0.96177 0.97732 1.22923 0.87316 0.96650 1.03520 1.22444 0.95466 0.93028 0.87646 0.90257 1.22378 0.96009 1.02685 1.02620 1.86504 1.76600 1.54450 1.18749 0.92010 0.93476 0.88754 0.90990 0.89123 0.93691 0.96697 0.92346 0.90430 0.85832 0.89790 0.88758 0.85196 0.84283 0.84416 0.84735 0.85900 0.92062 0.88809 0.89860 0.91349 0.93933 0.76405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 10.24 71.98 0.74 -2.83 16 2 C 0.10 2.90 5.96 86.38 0.51 3.41 16 3 N -0.60 -24.48 2.46 -826.14 -2.03 -26.50 16 4 C 0.23 11.23 4.23 85.63 0.36 11.59 16 5 C -0.53 -31.30 9.94 25.60 0.25 -31.04 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.76 5.47 84.65 0.46 1.23 16 8 N -0.94 -59.84 13.96 21.45 0.30 -59.55 16 9 Si 0.94 45.08 27.47 68.60 1.88 46.96 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 13 C 0.50 20.35 7.37 87.66 0.65 20.99 16 14 O -0.57 -29.01 14.00 -3.02 -0.04 -29.05 16 15 C 0.04 1.28 3.65 85.56 0.31 1.59 16 16 N -0.52 -14.92 4.38 -905.37 -3.97 -18.89 16 17 C 0.07 1.56 5.02 85.56 0.43 1.98 16 18 C -0.08 -1.72 5.18 -19.87 -0.10 -1.82 16 19 C -0.12 -2.35 8.09 22.27 0.18 -2.17 16 20 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 21 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 22 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 23 C -0.12 -2.56 9.68 22.27 0.22 -2.35 16 24 C 0.02 0.72 4.65 86.30 0.40 1.12 16 25 C 0.07 1.95 3.21 30.59 0.10 2.05 16 26 H 0.08 2.48 5.74 -2.39 -0.01 2.47 16 27 C -0.18 -4.60 9.46 71.98 0.68 -3.91 16 28 O -0.55 -11.15 10.30 -148.98 -1.53 -12.68 16 29 H 0.06 1.27 7.35 -2.39 -0.02 1.25 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 33 H 0.09 2.20 6.33 -2.39 -0.02 2.19 16 34 H 0.05 2.06 7.13 -2.39 -0.02 2.04 16 35 H 0.01 0.80 6.85 -2.39 -0.02 0.78 16 36 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 37 H 0.08 2.09 4.76 -2.39 -0.01 2.08 16 38 H 0.12 2.88 7.09 -2.39 -0.02 2.86 16 39 H 0.08 1.62 7.73 -2.39 -0.02 1.60 16 40 H 0.09 1.91 4.80 -2.39 -0.01 1.90 16 41 H 0.13 1.94 5.83 -2.91 -0.02 1.92 16 42 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.12 2.42 8.06 -2.91 -0.02 2.39 16 46 H 0.06 2.45 6.13 -2.39 -0.01 2.44 16 47 H 0.09 2.42 5.15 -2.38 -0.01 2.41 16 48 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 50 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.39 4.95 7.51 -74.06 -0.56 4.39 16 Total: -1.00 -78.66 395.37 0.79 -77.87 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.32 Total: 28.34 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.86 Total: -6.51 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -5.70 Total: -104.94 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -1.58 Total: -41.73 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -78.66 0.79 -77.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610161303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.773 kcal (2) G-P(sol) polarization free energy of solvation -78.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds