Wall clock time and date at job start Tue Mar 31 2020 18:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47342 * 2 1 4 4 C 1.46901 * 110.99676 * 297.03022 * 3 2 1 5 5 C 1.50703 * 109.47018 * 288.11784 * 4 3 2 6 6 O 1.21272 * 120.00209 * 354.17928 * 5 4 3 7 7 N 1.34775 * 119.99865 * 174.16817 * 5 4 3 8 8 C 1.46500 * 120.00169 * 180.02562 * 7 5 4 9 9 C 1.46498 * 120.00131 * 0.02562 * 7 5 4 10 10 C 1.46898 * 111.00257 * 60.98235 * 3 2 1 11 11 C 1.50697 * 109.46822 * 66.04600 * 10 3 2 12 12 C 1.38283 * 119.97542 * 269.97704 * 11 10 3 13 13 C 1.38246 * 120.11685 * 180.02562 * 12 11 10 14 14 C 1.38166 * 120.05111 * 359.68048 * 13 12 11 15 15 C 1.38717 * 119.94482 * 0.62164 * 14 13 12 16 16 O 1.35899 * 120.05830 * 179.68222 * 15 14 13 17 17 C 1.42906 * 116.99913 * 359.71820 * 16 15 14 18 18 C 1.52999 * 109.47098 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.46988 * 180.02562 * 18 17 16 20 20 H 1.07989 * 120.00091 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99523 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00603 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99631 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47240 * 90.00195 * 23 21 19 25 25 H 1.48508 * 109.47228 * 209.99692 * 23 21 19 26 26 H 1.48500 * 109.47163 * 329.99989 * 23 21 19 27 27 C 1.38126 * 119.97082 * 90.00745 * 11 10 3 28 28 H 1.08997 * 109.47021 * 182.01630 * 1 2 3 29 29 H 1.09007 * 109.46906 * 302.01534 * 1 2 3 30 30 H 1.08994 * 109.47043 * 62.01592 * 1 2 3 31 31 H 1.08997 * 109.47411 * 239.99900 * 2 1 3 32 32 H 1.09000 * 109.47223 * 119.99639 * 2 1 3 33 33 H 1.08995 * 109.47518 * 48.12079 * 4 3 2 34 34 H 1.09001 * 109.46955 * 168.12529 * 4 3 2 35 35 H 1.08998 * 109.46982 * 0.02562 * 8 7 5 36 36 H 1.09000 * 109.46916 * 120.00142 * 8 7 5 37 37 H 1.08998 * 109.47372 * 240.00519 * 8 7 5 38 38 H 1.09001 * 109.47196 * 89.99698 * 9 7 5 39 39 H 1.09000 * 109.47413 * 209.99381 * 9 7 5 40 40 H 1.08996 * 109.46997 * 329.99803 * 9 7 5 41 41 H 1.09002 * 109.47028 * 306.04659 * 10 3 2 42 42 H 1.08997 * 109.47533 * 186.04978 * 10 3 2 43 43 H 1.07999 * 119.94492 * 0.02562 * 12 11 10 44 44 H 1.07995 * 119.97991 * 179.97438 * 13 12 11 45 45 H 1.08001 * 120.03235 * 180.29532 * 14 13 12 46 46 H 1.09000 * 109.47019 * 300.00464 * 17 16 15 47 47 H 1.09001 * 109.46686 * 60.00503 * 17 16 15 48 48 H 1.09001 * 109.47126 * 300.00740 * 18 17 16 49 49 H 1.09000 * 109.46799 * 60.00134 * 18 17 16 50 50 H 0.96997 * 120.00154 * 179.97438 * 22 21 19 51 51 H 1.07995 * 120.02776 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6075 2.0890 -1.2217 5 6 2.3953 1.5638 -2.3941 6 8 3.2912 0.7664 -2.2144 7 7 2.1041 1.9802 -3.6424 8 6 2.8695 1.4692 -4.7823 9 6 1.0221 2.9436 -3.8595 10 6 1.5680 2.1031 1.1992 11 6 2.2100 1.4958 2.4199 12 6 1.5830 0.4595 3.0870 13 6 2.1691 -0.0995 4.2074 14 6 3.3865 0.3721 4.6596 15 6 4.0146 1.4159 3.9959 16 8 5.2090 1.8858 4.4424 17 6 5.7577 1.2622 5.6053 18 6 7.0939 1.9206 5.9545 19 6 7.6729 1.2625 7.1804 20 1 7.1413 0.4552 7.6619 21 6 8.8814 1.6913 7.6871 22 7 9.5290 2.6742 7.1005 23 14 9.5994 0.8751 9.2062 24 1 10.4582 -0.2650 8.7964 25 1 10.4137 1.8620 9.9603 26 1 8.4975 0.3796 10.0696 27 6 3.4240 1.9753 2.8718 28 1 -0.3633 -1.0270 0.0362 29 1 -0.3633 0.5449 0.8714 30 1 -0.3633 0.4822 -0.9075 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5442 1.9238 -1.3951 34 1 1.7954 3.1565 -1.1067 35 1 3.6255 0.7687 -4.4276 36 1 2.1971 0.9592 -5.4721 37 1 3.3552 2.2993 -5.2953 38 1 1.4223 3.9564 -3.8112 39 1 0.5770 2.7753 -4.8401 40 1 0.2621 2.8162 -3.0887 41 1 0.4839 2.0257 1.2823 42 1 1.8525 3.1525 1.1231 43 1 0.6339 0.0860 2.7321 44 1 1.6773 -0.9085 4.7270 45 1 3.8464 -0.0679 5.5321 46 1 5.0666 1.3782 6.4401 47 1 5.9153 0.2017 5.4086 48 1 7.7851 1.8051 5.1197 49 1 6.9359 2.9810 6.1513 50 1 10.3790 2.9760 7.4573 51 1 3.9128 2.7853 2.3511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611254577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:50 Heat of formation + Delta-G solvation = -37.681615 kcal Electronic energy + Delta-G solvation = -28365.800610 eV Core-core repulsion = 24458.971884 eV Total energy + Delta-G solvation = -3906.828726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45538 -39.73481 -38.21468 -36.61427 -35.73178 -33.34202 -31.85026 -31.00135 -30.66901 -29.15007 -28.92177 -27.55478 -26.03719 -25.15843 -24.84911 -22.56988 -21.96346 -21.11171 -19.92097 -19.30923 -17.63881 -17.23646 -16.74400 -16.48644 -16.17369 -15.92235 -15.66130 -15.47011 -15.22604 -15.11646 -14.50413 -14.19576 -14.01706 -13.72540 -13.49159 -13.11738 -13.03370 -12.91604 -12.87862 -12.70036 -12.59329 -12.39350 -12.31461 -12.27633 -12.00797 -11.75296 -11.34204 -11.24529 -11.19942 -10.93082 -10.83676 -10.68340 -10.39981 -10.00535 -9.80573 -9.61801 -9.26241 -9.04930 -8.70884 -8.42950 -8.40013 -7.76174 -6.06974 -4.11481 1.49367 1.73809 2.39576 2.59240 3.29868 3.35560 3.38463 3.64334 3.89216 4.14766 4.21114 4.43580 4.54389 4.68618 4.72862 4.83251 4.85708 4.92467 4.99962 5.03236 5.05652 5.13505 5.17021 5.19848 5.21918 5.29277 5.30352 5.35701 5.50234 5.52056 5.67053 5.73231 5.79473 5.89470 6.03431 6.07784 6.08809 6.11909 6.24783 6.60897 6.63160 6.64571 6.72059 6.79106 6.86035 7.01721 7.05910 7.55402 7.68784 7.85701 7.95696 8.12537 8.27860 8.94146 9.52547 11.04605 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.001997 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.508563 B =14017.801246 C =15090.129312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 N -0.511 5.511 4 C 0.033 3.967 5 C 0.512 3.488 6 O -0.512 6.512 7 N -0.630 5.630 8 C 0.081 3.919 9 C 0.078 3.922 10 C 0.094 3.906 11 C -0.045 4.045 12 C -0.166 4.166 13 C -0.082 4.082 14 C -0.211 4.211 15 C 0.145 3.855 16 O -0.315 6.315 17 C 0.066 3.934 18 C 0.025 3.975 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.137 4.137 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.129 0.871 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.028 0.972 49 H 0.028 0.972 50 H 0.263 0.737 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.338 -0.740 -21.983 32.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.083 4.083 3 N -0.234 5.234 4 C -0.098 4.098 5 C 0.300 3.700 6 O -0.385 6.385 7 N -0.366 5.366 8 C -0.062 4.062 9 C -0.066 4.066 10 C -0.032 4.032 11 C -0.045 4.045 12 C -0.185 4.185 13 C -0.100 4.100 14 C -0.230 4.230 15 C 0.098 3.902 16 O -0.228 6.228 17 C -0.008 4.008 18 C -0.012 4.012 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.156 4.156 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.147 0.853 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.046 0.954 49 H 0.046 0.954 50 H 0.073 0.927 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.015 -0.916 -21.932 31.805 hybrid contribution -0.525 -0.471 0.860 1.112 sum -23.540 -1.388 -21.073 31.625 Atomic orbital electron populations 1.22489 0.98711 1.02654 1.01550 1.22289 0.92014 0.89660 1.04353 1.61828 1.59681 1.02266 0.99621 1.22060 0.97745 1.00031 0.89936 1.20647 0.84341 0.81518 0.83527 1.90726 1.30488 1.33073 1.84238 1.47766 1.36071 1.45865 1.06924 1.21652 0.96799 0.99911 0.87837 1.21797 0.89643 0.92398 1.02717 1.21084 0.97176 0.97706 0.87258 1.19238 0.94251 0.96012 0.95012 1.20776 1.00991 0.98907 0.97778 1.20825 0.94577 0.98753 0.95824 1.21379 0.98101 1.00186 1.03304 1.19188 0.86069 0.92032 0.92904 1.86178 1.31452 1.59053 1.46163 1.23316 0.97517 0.96850 0.83162 1.19124 0.88322 0.96811 0.96965 1.20972 1.05358 1.18721 1.11342 0.92379 1.24996 0.96801 0.95021 0.97433 1.69977 1.15513 1.26967 1.40284 0.86486 0.79140 0.79126 0.82615 1.20501 1.21066 1.19786 1.20245 0.95773 1.03186 0.96420 0.91781 0.91993 0.93018 0.90067 0.89435 0.91474 0.87816 0.89416 0.92456 0.92336 0.92347 0.90980 0.91037 0.93193 0.89769 0.86751 0.86314 0.85339 0.93197 0.93162 0.95368 0.95404 0.92726 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 9.07 37.16 0.34 -1.13 16 2 C 0.04 0.47 5.37 -3.83 -0.02 0.45 16 3 N -0.51 -5.58 4.30 -237.52 -1.02 -6.60 16 4 C 0.03 0.27 4.05 -4.97 -0.02 0.25 16 5 C 0.51 5.42 7.27 -10.99 -0.08 5.34 16 6 O -0.51 -7.75 14.45 5.56 0.08 -7.67 16 7 N -0.63 -4.77 3.27 -189.52 -0.62 -5.39 16 8 C 0.08 0.55 10.68 59.85 0.64 1.19 16 9 C 0.08 0.28 10.31 59.85 0.62 0.90 16 10 C 0.09 0.95 4.89 -4.98 -0.02 0.92 16 11 C -0.04 -0.58 4.88 -104.65 -0.51 -1.09 16 12 C -0.17 -2.04 7.94 -39.56 -0.31 -2.35 16 13 C -0.08 -1.10 10.04 -39.61 -0.40 -1.49 16 14 C -0.21 -3.43 9.04 -39.43 -0.36 -3.78 16 15 C 0.15 2.65 6.69 -39.21 -0.26 2.39 16 16 O -0.32 -6.80 10.14 -19.42 -0.20 -6.99 16 17 C 0.07 1.46 4.68 37.16 0.17 1.63 16 18 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 19 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 23 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 C -0.14 -2.19 9.64 -39.43 -0.38 -2.57 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 5.36 -51.92 -0.28 0.16 16 30 H 0.05 0.34 6.33 -51.93 -0.33 0.01 16 31 H 0.08 0.98 6.57 -51.93 -0.34 0.64 16 32 H 0.09 1.05 6.10 -51.93 -0.32 0.73 16 33 H 0.07 0.40 4.86 -51.93 -0.25 0.15 16 34 H 0.10 0.69 7.81 -51.93 -0.41 0.29 16 35 H 0.09 0.80 6.90 -51.93 -0.36 0.44 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.16 8.07 -51.93 -0.42 -0.26 16 40 H 0.07 0.18 6.28 -51.93 -0.33 -0.15 16 41 H 0.05 0.41 5.93 -51.93 -0.31 0.10 16 42 H 0.08 0.77 7.80 -51.93 -0.41 0.36 16 43 H 0.11 1.13 6.96 -52.49 -0.37 0.76 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.13 2.06 6.30 -52.49 -0.33 1.73 16 46 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 47 H 0.05 1.07 7.65 -51.93 -0.40 0.67 16 48 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 51 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 402.39 15.07 6.06 6.06 Total: -1.00 -34.58 402.39 -9.29 -43.88 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.16 Total: -1.26 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.16 Total: -12.46 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.90 Total: -38.14 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.12 Total: -14.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.58 -9.29 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611254577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.194 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds