Wall clock time and date at job start Tue Mar 31 2020 18:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47342 * 2 1 4 4 C 1.46901 * 110.99676 * 297.03022 * 3 2 1 5 5 C 1.50703 * 109.47018 * 288.11784 * 4 3 2 6 6 O 1.21272 * 120.00209 * 354.17928 * 5 4 3 7 7 N 1.34775 * 119.99865 * 174.16817 * 5 4 3 8 8 C 1.46500 * 120.00169 * 180.02562 * 7 5 4 9 9 C 1.46498 * 120.00131 * 0.02562 * 7 5 4 10 10 C 1.46898 * 111.00257 * 60.98235 * 3 2 1 11 11 C 1.50697 * 109.46822 * 66.04600 * 10 3 2 12 12 C 1.38283 * 119.97542 * 269.97704 * 11 10 3 13 13 C 1.38246 * 120.11685 * 180.02562 * 12 11 10 14 14 C 1.38166 * 120.05111 * 359.68048 * 13 12 11 15 15 C 1.38717 * 119.94482 * 0.62164 * 14 13 12 16 16 O 1.35899 * 120.05830 * 179.68222 * 15 14 13 17 17 C 1.42906 * 116.99913 * 359.71820 * 16 15 14 18 18 C 1.52999 * 109.47098 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.46988 * 180.02562 * 18 17 16 20 20 H 1.07989 * 120.00091 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99523 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00603 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99631 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47240 * 90.00195 * 23 21 19 25 25 H 1.48508 * 109.47228 * 209.99692 * 23 21 19 26 26 H 1.48500 * 109.47163 * 329.99989 * 23 21 19 27 27 C 1.38126 * 119.97082 * 90.00745 * 11 10 3 28 28 H 1.08997 * 109.47021 * 182.01630 * 1 2 3 29 29 H 1.09007 * 109.46906 * 302.01534 * 1 2 3 30 30 H 1.08994 * 109.47043 * 62.01592 * 1 2 3 31 31 H 1.08997 * 109.47411 * 239.99900 * 2 1 3 32 32 H 1.09000 * 109.47223 * 119.99639 * 2 1 3 33 33 H 1.08995 * 109.47518 * 48.12079 * 4 3 2 34 34 H 1.09001 * 109.46955 * 168.12529 * 4 3 2 35 35 H 1.08998 * 109.46982 * 0.02562 * 8 7 5 36 36 H 1.09000 * 109.46916 * 120.00142 * 8 7 5 37 37 H 1.08998 * 109.47372 * 240.00519 * 8 7 5 38 38 H 1.09001 * 109.47196 * 89.99698 * 9 7 5 39 39 H 1.09000 * 109.47413 * 209.99381 * 9 7 5 40 40 H 1.08996 * 109.46997 * 329.99803 * 9 7 5 41 41 H 1.09002 * 109.47028 * 306.04659 * 10 3 2 42 42 H 1.08997 * 109.47533 * 186.04978 * 10 3 2 43 43 H 1.07999 * 119.94492 * 0.02562 * 12 11 10 44 44 H 1.07995 * 119.97991 * 179.97438 * 13 12 11 45 45 H 1.08001 * 120.03235 * 180.29532 * 14 13 12 46 46 H 1.09000 * 109.47019 * 300.00464 * 17 16 15 47 47 H 1.09001 * 109.46686 * 60.00503 * 17 16 15 48 48 H 1.09001 * 109.47126 * 300.00740 * 18 17 16 49 49 H 1.09000 * 109.46799 * 60.00134 * 18 17 16 50 50 H 0.96997 * 120.00154 * 179.97438 * 22 21 19 51 51 H 1.07995 * 120.02776 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6075 2.0890 -1.2217 5 6 2.3953 1.5638 -2.3941 6 8 3.2912 0.7664 -2.2144 7 7 2.1041 1.9802 -3.6424 8 6 2.8695 1.4692 -4.7823 9 6 1.0221 2.9436 -3.8595 10 6 1.5680 2.1031 1.1992 11 6 2.2100 1.4958 2.4199 12 6 1.5830 0.4595 3.0870 13 6 2.1691 -0.0995 4.2074 14 6 3.3865 0.3721 4.6596 15 6 4.0146 1.4159 3.9959 16 8 5.2090 1.8858 4.4424 17 6 5.7577 1.2622 5.6053 18 6 7.0939 1.9206 5.9545 19 6 7.6729 1.2625 7.1804 20 1 7.1413 0.4552 7.6619 21 6 8.8814 1.6913 7.6871 22 7 9.5290 2.6742 7.1005 23 14 9.5994 0.8751 9.2062 24 1 10.4582 -0.2650 8.7964 25 1 10.4137 1.8620 9.9603 26 1 8.4975 0.3796 10.0696 27 6 3.4240 1.9753 2.8718 28 1 -0.3633 -1.0270 0.0362 29 1 -0.3633 0.5449 0.8714 30 1 -0.3633 0.4822 -0.9075 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5442 1.9238 -1.3951 34 1 1.7954 3.1565 -1.1067 35 1 3.6255 0.7687 -4.4276 36 1 2.1971 0.9592 -5.4721 37 1 3.3552 2.2993 -5.2953 38 1 1.4223 3.9564 -3.8112 39 1 0.5770 2.7753 -4.8401 40 1 0.2621 2.8162 -3.0887 41 1 0.4839 2.0257 1.2823 42 1 1.8525 3.1525 1.1231 43 1 0.6339 0.0860 2.7321 44 1 1.6773 -0.9085 4.7270 45 1 3.8464 -0.0679 5.5321 46 1 5.0666 1.3782 6.4401 47 1 5.9153 0.2017 5.4086 48 1 7.7851 1.8051 5.1197 49 1 6.9359 2.9810 6.1513 50 1 10.3790 2.9760 7.4573 51 1 3.9128 2.7853 2.3511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611254577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:49 Heat of formation + Delta-G solvation = -60.441592 kcal Electronic energy + Delta-G solvation = -28366.787557 eV Core-core repulsion = 24458.971884 eV Total energy + Delta-G solvation = -3907.815673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.32301 -40.87315 -39.29308 -37.72064 -36.44079 -35.47529 -32.85304 -32.56376 -31.62258 -30.57198 -29.62035 -28.14035 -27.11480 -26.57523 -25.73186 -23.85299 -23.30525 -22.45783 -21.12939 -19.97542 -19.06635 -18.20725 -17.94289 -17.43666 -17.18167 -16.93997 -16.91969 -16.91537 -16.47125 -16.16288 -16.01644 -15.10029 -14.80672 -14.62470 -14.34155 -14.33164 -14.23927 -14.14468 -13.90261 -13.59628 -13.39690 -13.28589 -13.10819 -13.04820 -12.95781 -12.90813 -12.76043 -12.62808 -12.52110 -12.42307 -12.21257 -11.84783 -11.66186 -11.57610 -11.53792 -11.38399 -10.82845 -10.63402 -9.80457 -9.64134 -9.19224 -9.01411 -8.27578 -6.41695 0.36290 0.55533 1.39729 1.42589 1.53710 1.65989 2.01226 2.27496 2.51771 2.74451 3.06439 3.21371 3.62091 3.79935 3.93259 4.05764 4.13229 4.18409 4.22287 4.24940 4.25321 4.37425 4.39783 4.41918 4.46189 4.47984 4.53349 4.54752 4.58105 4.66210 4.72048 4.79969 4.85726 4.93415 4.96364 5.04034 5.09164 5.13894 5.29982 5.33399 5.44851 5.47618 5.53017 5.54660 5.62082 5.68030 5.90653 6.00501 6.06896 6.11324 6.41992 6.58912 6.72962 7.25514 7.28318 8.85690 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.001997 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.508563 B =14017.801246 C =15090.129312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 N -0.541 5.541 4 C 0.038 3.962 5 C 0.502 3.498 6 O -0.573 6.573 7 N -0.627 5.627 8 C 0.077 3.923 9 C 0.070 3.930 10 C 0.099 3.901 11 C -0.039 4.039 12 C -0.150 4.150 13 C -0.079 4.079 14 C -0.224 4.224 15 C 0.104 3.896 16 O -0.344 6.344 17 C 0.086 3.914 18 C 0.028 3.972 19 C -0.546 4.546 20 H 0.071 0.929 21 C 0.000 4.000 22 N -0.931 5.931 23 Si 0.979 3.021 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.258 1.258 27 C -0.153 4.153 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.125 0.875 46 H 0.061 0.939 47 H 0.056 0.944 48 H -0.005 1.005 49 H -0.001 1.001 50 H 0.267 0.733 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.060 -1.333 -22.247 35.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.079 4.079 3 N -0.264 5.264 4 C -0.092 4.092 5 C 0.291 3.709 6 O -0.452 6.452 7 N -0.362 5.362 8 C -0.065 4.065 9 C -0.071 4.071 10 C -0.028 4.028 11 C -0.040 4.040 12 C -0.169 4.169 13 C -0.097 4.097 14 C -0.243 4.243 15 C 0.058 3.942 16 O -0.259 6.259 17 C 0.011 3.989 18 C -0.009 4.009 19 C -0.584 4.584 20 H 0.089 0.911 21 C -0.199 4.199 22 N -0.570 5.570 23 Si 0.802 3.198 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.182 1.182 27 C -0.172 4.172 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.140 0.860 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.168 0.832 44 H 0.168 0.832 45 H 0.143 0.857 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.014 0.986 49 H 0.018 0.982 50 H 0.076 0.924 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -26.800 -1.485 -22.241 34.859 hybrid contribution 0.520 -0.253 0.730 0.931 sum -26.280 -1.738 -21.512 34.006 Atomic orbital electron populations 1.22398 0.95848 1.03485 1.02699 1.22135 0.94253 0.89293 1.02219 1.61663 1.61236 1.02724 1.00818 1.22122 0.98862 1.00367 0.87828 1.21195 0.83849 0.80884 0.84970 1.90703 1.33222 1.35981 1.85257 1.47941 1.36451 1.45670 1.06143 1.21710 0.96801 1.00071 0.87954 1.22089 0.88833 0.91750 1.04454 1.21112 0.98472 0.97669 0.85518 1.19637 0.92881 0.95667 0.95825 1.21213 1.01745 0.97421 0.96474 1.21214 0.93352 0.99084 0.96080 1.21483 0.99401 0.99975 1.03410 1.19541 0.85650 0.94210 0.94765 1.86083 1.33729 1.60032 1.46029 1.22837 0.95400 0.96340 0.84274 1.18968 0.90444 0.95636 0.95864 1.21389 1.06010 1.19182 1.11818 0.91089 1.26086 0.97175 0.95518 1.01113 1.70127 1.16082 1.28574 1.42246 0.85250 0.78502 0.78042 0.78044 1.19608 1.20509 1.18211 1.20412 0.97162 1.03547 0.96113 0.91187 0.90848 0.91680 0.92518 0.91353 0.88314 0.86050 0.92503 0.90303 0.90896 0.91400 0.89125 0.89324 0.90121 0.88945 0.83174 0.83156 0.85731 0.92089 0.92556 0.98630 0.98244 0.92414 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 9.07 71.98 0.65 -1.43 16 2 C 0.05 0.96 5.37 86.30 0.46 1.42 16 3 N -0.54 -10.96 4.30 -905.39 -3.89 -14.85 16 4 C 0.04 0.54 4.05 85.56 0.35 0.89 16 5 C 0.50 10.36 7.27 87.66 0.64 11.00 16 6 O -0.57 -18.26 14.45 -3.00 -0.04 -18.30 16 7 N -0.63 -8.60 3.27 -871.92 -2.85 -11.45 16 8 C 0.08 1.01 10.68 127.77 1.37 2.37 16 9 C 0.07 0.29 10.31 127.77 1.32 1.61 16 10 C 0.10 1.71 4.89 85.56 0.42 2.13 16 11 C -0.04 -0.97 4.88 -19.88 -0.10 -1.07 16 12 C -0.15 -3.25 7.94 22.28 0.18 -3.07 16 13 C -0.08 -1.96 10.04 22.25 0.22 -1.74 16 14 C -0.22 -7.28 9.04 22.37 0.20 -7.08 16 15 C 0.10 3.94 6.69 22.51 0.15 4.09 16 16 O -0.34 -15.83 10.14 -92.41 -0.94 -16.77 16 17 C 0.09 4.01 4.68 71.98 0.34 4.35 16 18 C 0.03 1.61 5.34 29.85 0.16 1.77 16 19 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 20 H 0.07 3.86 7.74 -2.92 -0.02 3.84 16 21 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 22 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 23 Si 0.98 44.58 29.54 68.60 2.03 46.60 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 27 C -0.15 -5.03 9.64 22.37 0.22 -4.82 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.67 5.36 -2.38 -0.01 0.65 16 30 H 0.06 0.57 6.33 -2.39 -0.02 0.55 16 31 H 0.06 1.39 6.57 -2.39 -0.02 1.38 16 32 H 0.07 1.55 6.10 -2.39 -0.01 1.54 16 33 H 0.10 0.75 4.86 -2.39 -0.01 0.74 16 34 H 0.12 1.27 7.81 -2.39 -0.02 1.25 16 35 H 0.06 1.11 6.90 -2.39 -0.02 1.10 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.09 0.08 8.07 -2.39 -0.02 0.06 16 40 H 0.09 0.07 6.28 -2.39 -0.02 0.06 16 41 H 0.08 0.92 5.93 -2.39 -0.01 0.91 16 42 H 0.09 1.46 7.80 -2.39 -0.02 1.44 16 43 H 0.15 2.21 6.96 -2.91 -0.02 2.19 16 44 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.12 4.04 6.30 -2.91 -0.02 4.02 16 46 H 0.06 2.66 7.67 -2.39 -0.02 2.64 16 47 H 0.06 2.51 7.65 -2.39 -0.02 2.49 16 48 H 0.00 -0.30 8.14 -2.39 -0.02 -0.31 16 49 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 50 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 51 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -81.37 402.39 2.77 -78.60 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.92 Total: 14.82 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 7.26 Total: -20.80 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -6.46 Total: -84.16 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.98 Total: -35.07 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -81.37 2.77 -78.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611254577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.162 kcal (2) G-P(sol) polarization free energy of solvation -81.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds