Wall clock time and date at job start Tue Mar 31 2020 18:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47262 * 2 1 4 4 C 1.46505 * 120.00148 * 270.00455 * 3 2 1 5 5 C 1.50700 * 109.47123 * 269.99801 * 4 3 2 6 6 H 1.08002 * 119.99844 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00141 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00013 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99784 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47338 * 89.99991 * 9 7 5 11 11 H 1.48505 * 109.46971 * 209.99622 * 9 7 5 12 12 H 1.48499 * 109.47241 * 329.99924 * 9 7 5 13 13 C 1.34774 * 120.00000 * 90.00236 * 3 2 1 14 14 O 1.21277 * 120.00619 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99864 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47370 * 180.02562 * 15 13 3 17 17 C 1.46899 * 111.00027 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.47456 * 34.99726 * 17 16 15 19 19 C 1.53003 * 109.46959 * 274.99611 * 17 16 15 20 20 O 1.42902 * 109.47117 * 295.37658 * 19 17 16 21 21 C 1.52996 * 109.46930 * 154.99887 * 17 16 15 22 22 H 1.08999 * 109.47433 * 63.72920 * 21 17 16 23 23 C 1.52995 * 109.47237 * 183.72867 * 21 17 16 24 24 C 1.50700 * 109.47426 * 303.72534 * 21 17 16 25 25 C 1.38239 * 119.99892 * 303.82471 * 24 21 17 26 26 C 1.38242 * 119.99669 * 179.78566 * 25 24 21 27 27 C 1.38233 * 119.99738 * 0.43670 * 26 25 24 28 28 C 1.38230 * 120.00390 * 359.81198 * 27 26 25 29 29 C 1.38231 * 119.99943 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.46674 * 299.99571 * 1 2 3 31 31 H 1.09006 * 109.47475 * 59.99291 * 1 2 3 32 32 H 1.08991 * 109.47215 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47152 * 240.00592 * 2 1 3 34 34 H 1.08999 * 109.47443 * 120.00304 * 2 1 3 35 35 H 1.09002 * 109.46996 * 30.00042 * 4 3 2 36 36 H 1.09000 * 109.46731 * 150.00349 * 4 3 2 37 37 H 0.97000 * 119.99955 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47234 * 299.99978 * 15 13 3 39 39 H 1.09004 * 109.47295 * 59.99786 * 15 13 3 40 40 H 1.00893 * 110.99856 * 56.03825 * 16 15 13 41 41 H 1.08997 * 109.46892 * 55.37602 * 19 17 16 42 42 H 1.09000 * 109.46779 * 175.37290 * 19 17 16 43 43 H 0.96695 * 113.99545 * 180.02562 * 20 19 17 44 44 H 1.09010 * 109.47257 * 54.22286 * 23 21 17 45 45 H 1.09003 * 109.47825 * 174.22661 * 23 21 17 46 46 H 1.09002 * 109.47374 * 294.22512 * 23 21 17 47 47 H 1.08000 * 120.00139 * 359.97438 * 25 24 21 48 48 H 1.08003 * 119.99729 * 180.27546 * 26 25 24 49 49 H 1.08004 * 119.99617 * 179.83588 * 27 26 25 50 50 H 1.08005 * 119.99885 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.00139 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7039 6 1 4.3426 1.2303 -1.0963 7 6 4.1490 2.3898 -2.8780 8 7 5.3912 2.1836 -3.2575 9 14 3.0126 3.4353 -3.9292 10 1 3.1161 4.8556 -3.5081 11 1 3.4055 3.3122 -5.3560 12 1 1.6129 2.9694 -3.7591 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3100 2.2061 3.5889 17 6 2.0777 1.5454 4.8802 18 1 2.3301 0.4882 4.7981 19 6 0.6049 1.6894 5.2691 20 8 0.3012 3.0694 5.4819 21 6 2.9541 2.1972 5.9515 22 1 2.6568 3.2379 6.0805 23 6 2.7819 1.4499 7.2754 24 6 4.3981 2.1365 5.5247 25 6 4.9788 0.9190 5.2222 26 6 6.3022 0.8638 4.8264 27 6 7.0472 2.0251 4.7418 28 6 6.4680 3.2419 5.0492 29 6 5.1435 3.2976 5.4407 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.5816 1.6879 -2.0284 36 1 2.0956 3.1411 -1.1383 37 1 5.7170 2.5735 -4.0838 38 1 0.9446 1.0113 2.5303 39 1 2.6230 0.4186 2.5298 40 1 1.7844 3.0647 3.5219 41 1 -0.0223 1.2987 4.4678 42 1 0.4146 1.1300 6.1850 43 1 -0.6178 3.2357 5.7324 44 1 2.9805 0.3891 7.1224 45 1 3.4808 1.8480 8.0111 46 1 1.7616 1.5801 7.6361 47 1 4.3978 0.0113 5.2922 48 1 6.7546 -0.0869 4.5858 49 1 8.0819 1.9816 4.4351 50 1 7.0503 4.1492 4.9835 51 1 4.6910 4.2483 5.6813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613390083.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:58 Heat of formation + Delta-G solvation = -58.802381 kcal Electronic energy + Delta-G solvation = -29976.060516 eV Core-core repulsion = 26068.315925 eV Total energy + Delta-G solvation = -3907.744591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.78949 -39.01665 -37.85679 -35.55785 -35.21567 -33.61955 -32.61609 -30.64647 -30.35073 -29.83214 -28.61672 -27.46320 -25.64656 -24.02372 -22.96103 -22.54564 -21.97765 -21.45488 -19.86849 -18.29975 -17.64691 -16.93023 -16.78454 -16.42476 -15.92573 -15.44556 -15.33136 -15.02412 -14.51708 -14.47623 -14.27116 -13.89099 -13.79290 -13.46661 -13.23795 -13.09331 -12.87238 -12.82764 -12.63066 -12.29413 -12.27696 -12.04317 -11.93970 -11.79182 -11.66322 -11.44792 -11.37719 -11.16663 -10.93812 -10.69279 -10.57837 -10.50529 -10.46162 -10.21591 -10.11612 -9.48367 -8.91858 -8.62283 -8.53856 -8.38352 -8.19201 -7.64970 -6.03382 -4.01467 1.67112 1.69954 3.31972 3.37767 3.39947 3.43224 3.67790 3.98804 4.05379 4.43300 4.44786 4.57551 4.75610 5.01251 5.06416 5.09024 5.11384 5.22320 5.24381 5.25472 5.30709 5.33470 5.35297 5.38084 5.47680 5.55046 5.58062 5.63986 5.69167 5.74084 5.77932 5.89925 5.96087 5.99351 6.13109 6.14756 6.29047 6.32591 6.38300 6.72243 6.73576 6.79171 6.89797 6.97237 7.09894 7.29426 7.35288 7.43066 7.57813 7.67074 8.33480 8.53259 9.00226 9.09385 9.57214 11.10224 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.003682 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.970491 B = 7602.826910 C = 9113.890004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.508 3.492 14 O -0.524 6.524 15 C 0.044 3.956 16 N -0.656 5.656 17 C 0.100 3.900 18 H 0.088 0.912 19 C 0.041 3.959 20 O -0.564 6.564 21 C -0.038 4.038 22 H 0.088 0.912 23 C -0.142 4.142 24 C -0.045 4.045 25 C -0.115 4.115 26 C -0.118 4.118 27 C -0.128 4.128 28 C -0.116 4.116 29 C -0.109 4.109 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.358 0.642 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.377 0.623 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.111 0.889 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.116 0.884 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.725 -5.737 21.271 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.098 3.902 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.294 3.706 14 O -0.399 6.399 15 C -0.089 4.089 16 N -0.288 5.288 17 C -0.011 4.011 18 H 0.106 0.894 19 C -0.038 4.038 20 O -0.369 6.369 21 C -0.057 4.057 22 H 0.106 0.894 23 C -0.200 4.200 24 C -0.045 4.045 25 C -0.133 4.133 26 C -0.136 4.136 27 C -0.146 4.146 28 C -0.134 4.134 29 C -0.127 4.127 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.180 0.820 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.224 0.776 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.129 0.871 48 H 0.133 0.867 49 H 0.133 0.867 50 H 0.134 0.866 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.063 -5.142 20.918 23.000 hybrid contribution -2.005 0.255 -0.748 2.155 sum -10.068 -4.887 20.171 23.067 Atomic orbital electron populations 1.22233 0.96976 1.01432 1.02072 1.21409 0.93187 0.84110 1.03012 1.47925 1.64649 1.13289 1.07009 1.19607 0.97235 0.93301 0.80104 1.21342 0.95367 1.32734 1.06965 0.90771 1.24851 0.94964 0.95814 0.97381 1.69900 1.15115 1.45135 1.23522 0.86864 0.81449 0.81696 0.79732 1.19934 1.21127 1.19162 1.20191 0.78544 0.87110 0.84804 1.90680 1.44313 1.18067 1.86859 1.21904 0.99400 0.96849 0.90717 1.60073 1.62840 1.06945 0.98974 1.21768 0.90640 0.98648 0.90023 0.89445 1.23003 0.98166 0.83197 0.99465 1.86499 1.33245 1.24804 1.92315 1.20045 0.91056 1.01470 0.93161 0.89387 1.21856 1.01498 1.00109 0.96511 1.19504 0.94354 0.93028 0.97600 1.20789 0.94903 0.97069 1.00557 1.21037 0.94564 0.98143 0.99890 1.21052 0.99866 0.92878 1.00791 1.21070 0.95382 0.97582 0.99391 1.20943 0.94019 0.97620 1.00105 0.93257 0.92219 0.92060 0.89763 0.91593 0.95452 0.94742 0.92642 0.93494 0.88862 0.82045 0.93854 0.93085 0.77614 0.92704 0.92305 0.92522 0.87102 0.86679 0.86651 0.86594 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.38 2.46 -175.05 -0.43 -12.81 16 4 C 0.22 5.45 4.23 -5.19 -0.02 5.43 16 5 C -0.53 -15.46 9.94 -34.44 -0.34 -15.80 16 6 H 0.07 2.41 8.06 -52.49 -0.42 1.98 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 9 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 10 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.51 10.58 7.71 -10.99 -0.08 10.49 16 14 O -0.52 -13.39 15.78 5.56 0.09 -13.30 16 15 C 0.04 0.66 4.52 -4.97 -0.02 0.63 16 16 N -0.66 -9.67 5.34 -107.99 -0.58 -10.25 16 17 C 0.10 1.08 1.71 -67.71 -0.12 0.96 16 18 H 0.09 0.87 6.98 -51.93 -0.36 0.51 16 19 C 0.04 0.35 6.33 37.16 0.24 0.59 16 20 O -0.56 -5.18 12.08 -35.23 -0.43 -5.61 16 21 C -0.04 -0.42 2.19 -91.78 -0.20 -0.62 16 22 H 0.09 1.08 7.18 -51.93 -0.37 0.70 16 23 C -0.14 -1.20 8.55 37.15 0.32 -0.88 16 24 C -0.04 -0.59 4.27 -104.62 -0.45 -1.03 16 25 C -0.12 -1.49 8.84 -39.58 -0.35 -1.84 16 26 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 27 C -0.13 -1.78 10.05 -39.59 -0.40 -2.17 16 28 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 29 C -0.11 -1.53 9.67 -39.59 -0.38 -1.91 16 30 H 0.05 0.58 7.22 -51.93 -0.38 0.20 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.38 8.07 -51.92 -0.42 0.97 16 34 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 35 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 36 H 0.03 0.93 6.85 -51.93 -0.36 0.57 16 37 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 38 H 0.05 0.58 6.41 -51.93 -0.33 0.25 16 39 H 0.09 1.32 7.32 -51.93 -0.38 0.94 16 40 H 0.36 5.80 7.63 -39.30 -0.30 5.50 16 41 H 0.04 0.36 7.36 -51.93 -0.38 -0.02 16 42 H 0.05 0.34 6.90 -51.93 -0.36 -0.02 16 43 H 0.38 1.86 9.12 45.56 0.42 2.28 16 44 H 0.05 0.42 7.83 -51.92 -0.41 0.01 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.41 6.93 -51.93 -0.36 0.05 16 47 H 0.11 1.21 7.22 -52.49 -0.38 0.83 16 48 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 49 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 50 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 51 H 0.12 1.49 7.95 -52.49 -0.42 1.07 16 LS Contribution 407.08 15.07 6.13 6.13 Total: -1.00 -36.61 407.08 -9.07 -45.68 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.62 Total: 8.47 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.35 Total: -8.20 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.23 Total: -50.55 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.34 Total: -18.91 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.61 -9.07 -45.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613390083.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.123 kcal (2) G-P(sol) polarization free energy of solvation -36.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds