Wall clock time and date at job start Tue Mar 31 2020 18:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47262 * 2 1 4 4 C 1.46505 * 120.00148 * 270.00455 * 3 2 1 5 5 C 1.50700 * 109.47123 * 269.99801 * 4 3 2 6 6 H 1.08002 * 119.99844 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00141 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00013 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99784 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47338 * 89.99991 * 9 7 5 11 11 H 1.48505 * 109.46971 * 209.99622 * 9 7 5 12 12 H 1.48499 * 109.47241 * 329.99924 * 9 7 5 13 13 C 1.34774 * 120.00000 * 90.00236 * 3 2 1 14 14 O 1.21277 * 120.00619 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99864 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47370 * 180.02562 * 15 13 3 17 17 C 1.46899 * 111.00027 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.47456 * 34.99726 * 17 16 15 19 19 C 1.53003 * 109.46959 * 274.99611 * 17 16 15 20 20 O 1.42902 * 109.47117 * 295.37658 * 19 17 16 21 21 C 1.52996 * 109.46930 * 154.99887 * 17 16 15 22 22 H 1.08999 * 109.47433 * 63.72920 * 21 17 16 23 23 C 1.52995 * 109.47237 * 183.72867 * 21 17 16 24 24 C 1.50700 * 109.47426 * 303.72534 * 21 17 16 25 25 C 1.38239 * 119.99892 * 303.82471 * 24 21 17 26 26 C 1.38242 * 119.99669 * 179.78566 * 25 24 21 27 27 C 1.38233 * 119.99738 * 0.43670 * 26 25 24 28 28 C 1.38230 * 120.00390 * 359.81198 * 27 26 25 29 29 C 1.38231 * 119.99943 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.46674 * 299.99571 * 1 2 3 31 31 H 1.09006 * 109.47475 * 59.99291 * 1 2 3 32 32 H 1.08991 * 109.47215 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47152 * 240.00592 * 2 1 3 34 34 H 1.08999 * 109.47443 * 120.00304 * 2 1 3 35 35 H 1.09002 * 109.46996 * 30.00042 * 4 3 2 36 36 H 1.09000 * 109.46731 * 150.00349 * 4 3 2 37 37 H 0.97000 * 119.99955 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47234 * 299.99978 * 15 13 3 39 39 H 1.09004 * 109.47295 * 59.99786 * 15 13 3 40 40 H 1.00893 * 110.99856 * 56.03825 * 16 15 13 41 41 H 1.08997 * 109.46892 * 55.37602 * 19 17 16 42 42 H 1.09000 * 109.46779 * 175.37290 * 19 17 16 43 43 H 0.96695 * 113.99545 * 180.02562 * 20 19 17 44 44 H 1.09010 * 109.47257 * 54.22286 * 23 21 17 45 45 H 1.09003 * 109.47825 * 174.22661 * 23 21 17 46 46 H 1.09002 * 109.47374 * 294.22512 * 23 21 17 47 47 H 1.08000 * 120.00139 * 359.97438 * 25 24 21 48 48 H 1.08003 * 119.99729 * 180.27546 * 26 25 24 49 49 H 1.08004 * 119.99617 * 179.83588 * 27 26 25 50 50 H 1.08005 * 119.99885 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.00139 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7039 6 1 4.3426 1.2303 -1.0963 7 6 4.1490 2.3898 -2.8780 8 7 5.3912 2.1836 -3.2575 9 14 3.0126 3.4353 -3.9292 10 1 3.1161 4.8556 -3.5081 11 1 3.4055 3.3122 -5.3560 12 1 1.6129 2.9694 -3.7591 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3100 2.2061 3.5889 17 6 2.0777 1.5454 4.8802 18 1 2.3301 0.4882 4.7981 19 6 0.6049 1.6894 5.2691 20 8 0.3012 3.0694 5.4819 21 6 2.9541 2.1972 5.9515 22 1 2.6568 3.2379 6.0805 23 6 2.7819 1.4499 7.2754 24 6 4.3981 2.1365 5.5247 25 6 4.9788 0.9190 5.2222 26 6 6.3022 0.8638 4.8264 27 6 7.0472 2.0251 4.7418 28 6 6.4680 3.2419 5.0492 29 6 5.1435 3.2976 5.4407 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.5816 1.6879 -2.0284 36 1 2.0956 3.1411 -1.1383 37 1 5.7170 2.5735 -4.0838 38 1 0.9446 1.0113 2.5303 39 1 2.6230 0.4186 2.5298 40 1 1.7844 3.0647 3.5219 41 1 -0.0223 1.2987 4.4678 42 1 0.4146 1.1300 6.1850 43 1 -0.6178 3.2357 5.7324 44 1 2.9805 0.3891 7.1224 45 1 3.4808 1.8480 8.0111 46 1 1.7616 1.5801 7.6361 47 1 4.3978 0.0113 5.2922 48 1 6.7546 -0.0869 4.5858 49 1 8.0819 1.9816 4.4351 50 1 7.0503 4.1492 4.9835 51 1 4.6910 4.2483 5.6813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613390083.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:57 Heat of formation + Delta-G solvation = -85.837205 kcal Electronic energy + Delta-G solvation = -29977.232834 eV Core-core repulsion = 26068.315925 eV Total energy + Delta-G solvation = -3908.916909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.94688 -40.36093 -38.75023 -36.98524 -36.21886 -34.95666 -34.50856 -31.90777 -31.67581 -30.83236 -29.97685 -28.70411 -26.80302 -25.05958 -24.35855 -23.64733 -23.51302 -22.46631 -20.80944 -19.78582 -19.10818 -18.38348 -18.06075 -17.54135 -17.32397 -16.71135 -16.33158 -16.19321 -15.97226 -15.68029 -15.43205 -15.23148 -14.77930 -14.70127 -14.57640 -14.17531 -14.07181 -14.03310 -13.83599 -13.67671 -13.56077 -13.23314 -13.13199 -13.00644 -12.82139 -12.59157 -12.52301 -12.38739 -12.33208 -12.08712 -12.03489 -11.88676 -11.74523 -11.46780 -11.41685 -10.84226 -10.83206 -10.57810 -9.68354 -9.41926 -9.39782 -9.18205 -8.34309 -6.38941 0.63141 0.63829 1.29987 1.35080 1.42982 1.85233 2.26668 2.30034 2.99917 3.01733 3.13365 3.59400 3.74833 3.76115 3.97124 4.09404 4.17525 4.22170 4.24683 4.31593 4.33343 4.41585 4.43110 4.51891 4.58746 4.60391 4.63287 4.69126 4.74301 4.79630 4.80260 4.89506 4.92462 5.00182 5.01270 5.06834 5.21127 5.29379 5.32544 5.38061 5.40874 5.47345 5.67315 5.69516 5.73387 5.88286 6.10579 6.25771 6.28204 6.42652 6.62386 6.77777 6.95801 7.22124 7.49852 8.83011 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.003682 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.970491 B = 7602.826910 C = 9113.890004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.228 3.772 5 C -0.534 4.534 6 H 0.025 0.975 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.273 1.273 12 H -0.238 1.238 13 C 0.495 3.505 14 O -0.584 6.584 15 C 0.061 3.939 16 N -0.679 5.679 17 C 0.098 3.902 18 H 0.103 0.897 19 C 0.047 3.953 20 O -0.586 6.586 21 C -0.033 4.033 22 H 0.070 0.930 23 C -0.135 4.135 24 C -0.048 4.048 25 C -0.121 4.121 26 C -0.131 4.131 27 C -0.149 4.149 28 C -0.135 4.135 29 C -0.133 4.133 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.014 0.986 37 H 0.268 0.732 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.347 0.653 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.395 0.605 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.136 0.864 48 H 0.132 0.868 49 H 0.125 0.875 50 H 0.123 0.877 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.065 -7.617 22.310 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.105 3.895 5 C -0.572 4.572 6 H 0.044 0.956 7 C -0.188 4.188 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.198 1.198 12 H -0.161 1.161 13 C 0.284 3.716 14 O -0.464 6.464 15 C -0.070 4.070 16 N -0.311 5.311 17 C -0.011 4.011 18 H 0.121 0.879 19 C -0.033 4.033 20 O -0.394 6.394 21 C -0.052 4.052 22 H 0.088 0.912 23 C -0.193 4.193 24 C -0.049 4.049 25 C -0.139 4.139 26 C -0.149 4.149 27 C -0.167 4.167 28 C -0.153 4.153 29 C -0.151 4.151 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.167 0.833 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.244 0.756 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.154 0.846 48 H 0.150 0.850 49 H 0.143 0.857 50 H 0.141 0.859 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.448 -7.090 21.991 25.786 hybrid contribution -0.871 0.809 -1.008 1.558 sum -12.319 -6.281 20.983 25.129 Atomic orbital electron populations 1.22144 0.93857 1.03641 1.01979 1.21764 0.95658 0.81155 1.03837 1.48060 1.64491 1.15192 1.05704 1.19233 0.94639 0.92833 0.82774 1.21569 0.97146 1.31971 1.06552 0.95613 1.25858 0.96724 0.97181 0.98995 1.70056 1.17433 1.46679 1.24463 0.85717 0.80494 0.78909 0.77819 1.20427 1.19807 1.16066 1.21327 0.77006 0.86704 0.86572 1.90643 1.46972 1.20898 1.87868 1.21795 1.01781 0.96080 0.87391 1.60038 1.63555 1.06963 1.00517 1.21888 0.92509 0.98873 0.87860 0.87882 1.22934 0.96137 0.83256 1.00927 1.86470 1.35026 1.25395 1.92512 1.20028 0.89491 1.01071 0.94652 0.91175 1.21809 1.02418 1.00365 0.94678 1.19834 0.95564 0.92723 0.96734 1.21093 0.94902 0.97897 1.00021 1.21377 0.95158 0.98668 0.99712 1.21317 1.00724 0.93223 1.01468 1.21311 0.95865 0.98237 0.99839 1.21177 0.94402 0.98450 1.01069 0.92043 0.93645 0.88625 0.91173 0.88679 0.93464 0.96831 0.92315 0.89724 0.87551 0.83315 0.93069 0.90481 0.75561 0.91365 0.92784 0.90883 0.84628 0.85023 0.85690 0.85873 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 10.24 71.98 0.74 -2.58 16 2 C 0.10 2.83 5.93 86.38 0.51 3.34 16 3 N -0.60 -24.73 2.46 -826.13 -2.03 -26.76 16 4 C 0.23 11.44 4.23 85.63 0.36 11.80 16 5 C -0.53 -32.49 9.94 25.60 0.25 -32.24 16 6 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 7 C 0.01 0.62 5.47 84.65 0.46 1.08 16 8 N -0.95 -61.49 13.96 21.45 0.30 -61.19 16 9 Si 0.95 45.81 27.47 68.60 1.88 47.69 16 10 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 13 C 0.50 20.57 7.71 87.66 0.68 21.24 16 14 O -0.58 -30.87 15.78 -3.02 -0.05 -30.91 16 15 C 0.06 1.70 4.52 85.56 0.39 2.09 16 16 N -0.68 -19.14 5.34 -495.56 -2.65 -21.78 16 17 C 0.10 1.85 1.71 44.92 0.08 1.93 16 18 H 0.10 1.62 6.98 -2.39 -0.02 1.60 16 19 C 0.05 0.62 6.33 71.98 0.46 1.08 16 20 O -0.59 -9.38 12.08 -148.98 -1.80 -11.18 16 21 C -0.03 -0.68 2.19 -11.54 -0.03 -0.70 16 22 H 0.07 1.68 7.18 -2.39 -0.02 1.66 16 23 C -0.14 -1.90 8.55 71.98 0.62 -1.28 16 24 C -0.05 -1.25 4.27 -19.87 -0.08 -1.34 16 25 C -0.12 -2.99 8.84 22.27 0.20 -2.80 16 26 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 27 C -0.15 -4.29 10.05 22.27 0.22 -4.06 16 28 C -0.13 -3.98 10.05 22.27 0.22 -3.75 16 29 C -0.13 -3.88 9.67 22.27 0.22 -3.67 16 30 H 0.06 1.16 7.22 -2.38 -0.02 1.14 16 31 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 2.22 8.07 -2.38 -0.02 2.20 16 34 H 0.10 2.17 6.44 -2.39 -0.02 2.16 16 35 H 0.05 2.18 7.13 -2.39 -0.02 2.16 16 36 H 0.01 0.74 6.85 -2.39 -0.02 0.72 16 37 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 38 H 0.09 1.72 6.41 -2.39 -0.02 1.71 16 39 H 0.11 2.69 7.32 -2.38 -0.02 2.67 16 40 H 0.35 11.11 7.63 -89.70 -0.68 10.43 16 41 H 0.05 0.62 7.36 -2.39 -0.02 0.60 16 42 H 0.08 0.65 6.90 -2.39 -0.02 0.64 16 43 H 0.39 2.86 9.12 -74.06 -0.68 2.19 16 44 H 0.07 0.79 7.83 -2.38 -0.02 0.77 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 0.80 6.93 -2.39 -0.02 0.78 16 47 H 0.14 2.57 7.22 -2.91 -0.02 2.55 16 48 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 49 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 50 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 51 H 0.12 3.20 7.95 -2.91 -0.02 3.18 16 Total: -1.00 -85.54 407.08 0.69 -84.85 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -0.48 Total: 32.42 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 5.51 Total: -13.13 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -4.37 Total: -109.74 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.85 Total: -42.09 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.69 kcal Total: -85.54 0.69 -84.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613390083.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.985 kcal (2) G-P(sol) polarization free energy of solvation -85.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds