Wall clock time and date at job start Tue Mar 31 2020 18:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.47431 * 2 1 4 4 C 1.46496 * 120.00056 * 270.00743 * 3 2 1 5 5 C 1.50704 * 109.46870 * 269.99147 * 4 3 2 6 6 H 1.08007 * 119.99861 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00161 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99954 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00019 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46986 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47122 * 119.99875 * 9 7 5 12 12 H 1.48496 * 109.46816 * 239.99875 * 9 7 5 13 13 C 1.34780 * 119.99787 * 89.99500 * 3 2 1 14 14 O 1.21280 * 119.99584 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00044 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47212 * 179.97438 * 15 13 3 17 17 C 1.46901 * 110.99890 * 180.02562 * 16 15 13 18 18 H 1.08992 * 109.47407 * 325.00184 * 17 16 15 19 19 C 1.53002 * 109.46860 * 85.00127 * 17 16 15 20 20 O 1.42903 * 109.47251 * 64.99874 * 19 17 16 21 21 C 1.53000 * 109.46769 * 204.99887 * 17 16 15 22 22 H 1.09002 * 109.47398 * 300.00295 * 21 17 16 23 23 C 1.53002 * 109.47233 * 60.00469 * 21 17 16 24 24 C 1.50703 * 109.46912 * 180.02562 * 21 17 16 25 25 C 1.38237 * 119.99747 * 299.72651 * 24 21 17 26 26 C 1.38240 * 119.99788 * 179.81066 * 25 24 21 27 27 C 1.38236 * 119.99657 * 0.39831 * 26 25 24 28 28 C 1.38230 * 120.00403 * 359.85459 * 27 26 25 29 29 C 1.38232 * 120.00112 * 120.00202 * 24 21 17 30 30 H 1.08998 * 109.47641 * 300.00005 * 1 2 3 31 31 H 1.09004 * 109.47152 * 59.99809 * 1 2 3 32 32 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47335 * 240.00644 * 2 1 3 34 34 H 1.08997 * 109.47389 * 120.00528 * 2 1 3 35 35 H 1.09003 * 109.47532 * 29.99289 * 4 3 2 36 36 H 1.08997 * 109.47528 * 149.99552 * 4 3 2 37 37 H 0.97005 * 119.99939 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.46887 * 59.99816 * 15 13 3 39 39 H 1.09002 * 109.47143 * 299.99893 * 15 13 3 40 40 H 1.00902 * 110.99732 * 56.04320 * 16 15 13 41 41 H 1.09002 * 109.46816 * 184.99536 * 19 17 16 42 42 H 1.08996 * 109.47073 * 304.99787 * 19 17 16 43 43 H 0.96694 * 114.00531 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.47075 * 59.99068 * 23 21 17 45 45 H 1.08996 * 109.47407 * 180.02562 * 23 21 17 46 46 H 1.09000 * 109.46986 * 299.99797 * 23 21 17 47 47 H 1.08003 * 120.00234 * 0.02562 * 25 24 21 48 48 H 1.07995 * 119.99993 * 180.23158 * 26 25 24 49 49 H 1.08005 * 119.99783 * 179.83592 * 27 26 25 50 50 H 1.08000 * 120.00473 * 179.97438 * 28 27 26 51 51 H 1.08005 * 119.99991 * 359.97438 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1493 2.3906 -2.8774 8 7 3.3496 3.1275 -3.6170 9 14 5.9134 2.0966 -3.4170 10 1 6.6007 1.2406 -2.4170 11 1 5.9204 1.4185 -4.7381 12 1 6.6214 3.3974 -3.5245 13 6 2.2429 2.0166 1.1673 14 8 2.6468 3.1602 1.1672 15 6 1.9921 1.3060 2.4723 16 7 2.3107 2.2058 3.5889 17 6 2.0783 1.5451 4.8802 18 1 1.2184 0.8804 4.7987 19 6 3.3157 0.7330 5.2676 20 8 4.4162 1.6175 5.4882 21 6 1.8059 2.6023 5.9522 22 1 2.6659 3.2671 6.0337 23 6 0.5684 3.4145 5.5648 24 6 1.5680 1.9246 7.2770 25 6 0.5206 1.0338 7.4194 26 6 0.3048 0.4091 8.6336 27 6 1.1314 0.6816 9.7076 28 6 2.1755 1.5764 9.5667 29 6 2.3937 2.1981 8.3514 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.5816 1.6878 -2.0284 36 1 2.0954 3.1411 -1.1384 37 1 3.6756 3.5180 -4.4429 38 1 2.6227 0.4187 2.5299 39 1 0.9442 1.0115 2.5302 40 1 1.7857 3.0649 3.5221 41 1 3.1115 0.1726 6.1800 42 1 3.5621 0.0402 4.4631 43 1 5.2363 1.1704 5.7383 44 1 -0.2915 2.7497 5.4831 45 1 0.3747 4.1679 6.3282 46 1 0.7409 3.9046 4.6066 47 1 -0.1269 0.8231 6.5811 48 1 -0.5112 -0.2897 8.7438 49 1 0.9611 0.1956 10.6570 50 1 2.8210 1.7897 10.4058 51 1 3.2096 2.8972 8.2412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613390084.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:02 Heat of formation + Delta-G solvation = -59.823849 kcal Electronic energy + Delta-G solvation = -29364.700635 eV Core-core repulsion = 25456.911750 eV Total energy + Delta-G solvation = -3907.788885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.08645 -39.06163 -37.68012 -35.60616 -35.16987 -33.55018 -32.69816 -31.12098 -30.09747 -29.69162 -28.92493 -27.40906 -25.41321 -24.05561 -23.00293 -22.85046 -22.43479 -21.51902 -19.83499 -18.34537 -17.50490 -16.97549 -16.74559 -16.31816 -16.01355 -15.60195 -15.21694 -15.11155 -14.70683 -14.52391 -14.20862 -14.02301 -13.67604 -13.52614 -13.37999 -13.26074 -13.08842 -12.87875 -12.73945 -12.44047 -12.29224 -12.12482 -11.95734 -11.69730 -11.59898 -11.45324 -11.17376 -10.95176 -10.91611 -10.84643 -10.73006 -10.65285 -10.50261 -10.08682 -9.87131 -9.56960 -9.13576 -8.89709 -8.82106 -8.39915 -8.22064 -7.60494 -6.00488 -4.04565 1.14099 1.19017 3.32674 3.40115 3.43371 3.50606 3.55218 3.77925 4.25620 4.35630 4.49527 4.53199 4.62631 4.78170 4.80796 4.88448 4.93023 5.13503 5.20642 5.26028 5.29346 5.32121 5.34323 5.37937 5.40614 5.47111 5.55332 5.57302 5.63719 5.70366 5.72678 5.79124 5.81668 5.83033 5.98999 6.03259 6.08703 6.23399 6.26826 6.29681 6.47145 6.51534 6.79557 6.95710 7.18246 7.48340 7.51018 7.61031 7.74245 7.96764 8.28351 8.48518 8.95888 9.17890 9.60580 11.07629 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.002475 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.964198 B =11311.930481 C =11902.514967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.247 3.753 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.526 6.526 15 C 0.041 3.959 16 N -0.659 5.659 17 C 0.100 3.900 18 H 0.054 0.946 19 C 0.090 3.910 20 O -0.551 6.551 21 C -0.052 4.052 22 H 0.099 0.901 23 C -0.152 4.152 24 C -0.064 4.064 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.129 4.129 28 C -0.121 4.121 29 C -0.109 4.109 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.352 0.648 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.370 0.630 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 -8.691 24.693 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.402 6.402 15 C -0.091 4.091 16 N -0.294 5.294 17 C -0.010 4.010 18 H 0.071 0.929 19 C 0.012 3.988 20 O -0.355 6.355 21 C -0.071 4.071 22 H 0.118 0.882 23 C -0.209 4.209 24 C -0.064 4.064 25 C -0.137 4.137 26 C -0.138 4.138 27 C -0.147 4.147 28 C -0.139 4.139 29 C -0.127 4.127 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.175 0.825 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.215 0.785 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.117 -7.639 24.315 26.462 hybrid contribution 0.373 -0.839 -0.272 0.958 sum -6.744 -8.479 24.043 26.371 Atomic orbital electron populations 1.22222 0.96940 1.01308 1.02221 1.21385 0.93360 0.84431 1.02558 1.48254 1.64149 1.13180 1.07725 1.19247 0.96229 0.93610 0.78117 1.21481 0.96939 1.31605 1.06097 0.92451 1.24938 0.97829 0.94977 0.96457 1.69945 1.35588 1.33619 1.14379 0.86448 0.84738 0.78068 0.78204 1.19800 1.21048 1.20882 1.20158 0.78853 0.87140 0.84812 1.90678 1.44667 1.17973 1.86887 1.21966 0.99445 0.96886 0.90853 1.60097 1.63325 1.06839 0.99134 1.21609 0.95065 0.95017 0.89330 0.92870 1.22119 0.87395 0.91437 0.97883 1.86583 1.20789 1.35966 1.92121 1.20228 0.99669 0.96613 0.90559 0.88231 1.21953 0.96851 1.00102 1.02043 1.19805 0.94927 0.96565 0.95120 1.21030 0.97862 0.97255 0.97587 1.21114 0.99569 0.99939 0.93219 1.21119 0.95979 0.98858 0.98732 1.21153 0.97977 0.97222 0.97513 1.21131 0.99173 0.99893 0.92467 0.93275 0.92007 0.92243 0.89969 0.91971 0.95122 0.93958 0.92843 0.89050 0.93261 0.82522 0.94019 0.94036 0.78483 0.92667 0.91975 0.91612 0.86333 0.86311 0.86429 0.86274 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.15 0.38 -1.84 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.68 16 3 N -0.60 -12.75 2.46 -175.06 -0.43 -13.18 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.51 16 5 C -0.52 -15.06 9.39 -34.44 -0.32 -15.39 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.50 10.66 7.71 -10.98 -0.08 10.57 16 14 O -0.53 -13.59 15.78 5.56 0.09 -13.50 16 15 C 0.04 0.63 4.52 -4.98 -0.02 0.60 16 16 N -0.66 -9.88 5.88 -107.99 -0.64 -10.51 16 17 C 0.10 1.15 1.85 -67.71 -0.13 1.02 16 18 H 0.05 0.55 7.06 -51.93 -0.37 0.18 16 19 C 0.09 1.01 6.46 37.16 0.24 1.25 16 20 O -0.55 -6.75 12.73 -35.23 -0.45 -7.20 16 21 C -0.05 -0.55 2.09 -91.77 -0.19 -0.74 16 22 H 0.10 1.24 7.29 -51.93 -0.38 0.86 16 23 C -0.15 -1.49 8.77 37.16 0.33 -1.17 16 24 C -0.06 -0.61 3.61 -104.62 -0.38 -0.99 16 25 C -0.12 -1.05 8.71 -39.58 -0.34 -1.40 16 26 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 27 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 28 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 29 C -0.11 -1.01 9.67 -39.58 -0.38 -1.39 16 30 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.09 1.31 6.62 -51.93 -0.34 0.96 16 39 H 0.05 0.63 7.10 -51.93 -0.37 0.26 16 40 H 0.35 5.44 5.87 -39.29 -0.23 5.21 16 41 H 0.04 0.41 7.40 -51.93 -0.38 0.03 16 42 H 0.04 0.48 7.35 -51.93 -0.38 0.09 16 43 H 0.37 3.04 9.12 45.56 0.42 3.46 16 44 H 0.05 0.49 7.38 -51.93 -0.38 0.11 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.71 6.21 -51.93 -0.32 0.39 16 47 H 0.12 0.93 7.11 -52.48 -0.37 0.56 16 48 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 49 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 50 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 51 H 0.12 1.10 7.95 -52.48 -0.42 0.68 16 LS Contribution 409.10 15.07 6.17 6.17 Total: -1.00 -35.23 409.10 -9.34 -44.57 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.55 Total: 6.44 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.25 Total: -3.81 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.33 Total: -49.94 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.36 Total: -20.71 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.23 -9.34 -44.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613390084.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.250 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds