Wall clock time and date at job start Tue Mar 31 2020 18:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.47431 * 2 1 4 4 C 1.46496 * 120.00056 * 270.00743 * 3 2 1 5 5 C 1.50704 * 109.46870 * 269.99147 * 4 3 2 6 6 H 1.08007 * 119.99861 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00161 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99954 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00019 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46986 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47122 * 119.99875 * 9 7 5 12 12 H 1.48496 * 109.46816 * 239.99875 * 9 7 5 13 13 C 1.34780 * 119.99787 * 89.99500 * 3 2 1 14 14 O 1.21280 * 119.99584 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00044 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47212 * 179.97438 * 15 13 3 17 17 C 1.46901 * 110.99890 * 180.02562 * 16 15 13 18 18 H 1.08992 * 109.47407 * 325.00184 * 17 16 15 19 19 C 1.53002 * 109.46860 * 85.00127 * 17 16 15 20 20 O 1.42903 * 109.47251 * 64.99874 * 19 17 16 21 21 C 1.53000 * 109.46769 * 204.99887 * 17 16 15 22 22 H 1.09002 * 109.47398 * 300.00295 * 21 17 16 23 23 C 1.53002 * 109.47233 * 60.00469 * 21 17 16 24 24 C 1.50703 * 109.46912 * 180.02562 * 21 17 16 25 25 C 1.38237 * 119.99747 * 299.72651 * 24 21 17 26 26 C 1.38240 * 119.99788 * 179.81066 * 25 24 21 27 27 C 1.38236 * 119.99657 * 0.39831 * 26 25 24 28 28 C 1.38230 * 120.00403 * 359.85459 * 27 26 25 29 29 C 1.38232 * 120.00112 * 120.00202 * 24 21 17 30 30 H 1.08998 * 109.47641 * 300.00005 * 1 2 3 31 31 H 1.09004 * 109.47152 * 59.99809 * 1 2 3 32 32 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47335 * 240.00644 * 2 1 3 34 34 H 1.08997 * 109.47389 * 120.00528 * 2 1 3 35 35 H 1.09003 * 109.47532 * 29.99289 * 4 3 2 36 36 H 1.08997 * 109.47528 * 149.99552 * 4 3 2 37 37 H 0.97005 * 119.99939 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.46887 * 59.99816 * 15 13 3 39 39 H 1.09002 * 109.47143 * 299.99893 * 15 13 3 40 40 H 1.00902 * 110.99732 * 56.04320 * 16 15 13 41 41 H 1.09002 * 109.46816 * 184.99536 * 19 17 16 42 42 H 1.08996 * 109.47073 * 304.99787 * 19 17 16 43 43 H 0.96694 * 114.00531 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.47075 * 59.99068 * 23 21 17 45 45 H 1.08996 * 109.47407 * 180.02562 * 23 21 17 46 46 H 1.09000 * 109.46986 * 299.99797 * 23 21 17 47 47 H 1.08003 * 120.00234 * 0.02562 * 25 24 21 48 48 H 1.07995 * 119.99993 * 180.23158 * 26 25 24 49 49 H 1.08005 * 119.99783 * 179.83592 * 27 26 25 50 50 H 1.08000 * 120.00473 * 179.97438 * 28 27 26 51 51 H 1.08005 * 119.99991 * 359.97438 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1493 2.3906 -2.8774 8 7 3.3496 3.1275 -3.6170 9 14 5.9134 2.0966 -3.4170 10 1 6.6007 1.2406 -2.4170 11 1 5.9204 1.4185 -4.7381 12 1 6.6214 3.3974 -3.5245 13 6 2.2429 2.0166 1.1673 14 8 2.6468 3.1602 1.1672 15 6 1.9921 1.3060 2.4723 16 7 2.3107 2.2058 3.5889 17 6 2.0783 1.5451 4.8802 18 1 1.2184 0.8804 4.7987 19 6 3.3157 0.7330 5.2676 20 8 4.4162 1.6175 5.4882 21 6 1.8059 2.6023 5.9522 22 1 2.6659 3.2671 6.0337 23 6 0.5684 3.4145 5.5648 24 6 1.5680 1.9246 7.2770 25 6 0.5206 1.0338 7.4194 26 6 0.3048 0.4091 8.6336 27 6 1.1314 0.6816 9.7076 28 6 2.1755 1.5764 9.5667 29 6 2.3937 2.1981 8.3514 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.5816 1.6878 -2.0284 36 1 2.0954 3.1411 -1.1384 37 1 3.6756 3.5180 -4.4429 38 1 2.6227 0.4187 2.5299 39 1 0.9442 1.0115 2.5302 40 1 1.7857 3.0649 3.5221 41 1 3.1115 0.1726 6.1800 42 1 3.5621 0.0402 4.4631 43 1 5.2363 1.1704 5.7383 44 1 -0.2915 2.7497 5.4831 45 1 0.3747 4.1679 6.3282 46 1 0.7409 3.9046 4.6066 47 1 -0.1269 0.8231 6.5811 48 1 -0.5112 -0.2897 8.7438 49 1 0.9611 0.1956 10.6570 50 1 2.8210 1.7897 10.4058 51 1 3.2096 2.8972 8.2412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613390084.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:01 Heat of formation + Delta-G solvation = -84.762753 kcal Electronic energy + Delta-G solvation = -29365.782068 eV Core-core repulsion = 25456.911750 eV Total energy + Delta-G solvation = -3908.870317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.99359 -40.45891 -38.58630 -36.95958 -36.43190 -34.98030 -34.38489 -31.72889 -31.62819 -30.57451 -29.87534 -29.06606 -26.90825 -24.87075 -24.63317 -23.91335 -23.46522 -22.40910 -20.71229 -19.85797 -18.64645 -18.37475 -18.03588 -17.62973 -17.39364 -16.82962 -16.35959 -16.14069 -16.00692 -15.83667 -15.30967 -14.94724 -14.75790 -14.68811 -14.51148 -14.16059 -14.13786 -14.03186 -13.91902 -13.63696 -13.47867 -13.27184 -13.09684 -13.07048 -12.95395 -12.82702 -12.66336 -12.49111 -12.21782 -12.15551 -11.86275 -11.73705 -11.68375 -11.61524 -11.47612 -10.73961 -10.65047 -10.52557 -9.75247 -9.56334 -9.43518 -9.25943 -8.22471 -6.36916 0.51265 0.57166 1.34778 1.38020 1.49610 1.87042 2.26314 2.41508 2.93085 3.06706 3.17149 3.51166 3.71046 3.77965 3.87047 4.07655 4.11321 4.15999 4.23178 4.27589 4.35578 4.39895 4.42264 4.45961 4.56900 4.63055 4.64639 4.67286 4.69828 4.76969 4.80397 4.92599 4.94951 4.99420 5.05830 5.15377 5.17369 5.22615 5.25018 5.31820 5.39131 5.58737 5.65304 5.69795 5.83430 5.86406 6.04939 6.07667 6.18740 6.35467 6.71536 6.84535 7.03521 7.29280 7.53965 8.84633 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.002475 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.964198 B =11311.930481 C =11902.514967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.494 3.506 14 O -0.587 6.587 15 C 0.059 3.941 16 N -0.681 5.681 17 C 0.101 3.899 18 H 0.076 0.924 19 C 0.091 3.909 20 O -0.575 6.575 21 C -0.043 4.043 22 H 0.073 0.927 23 C -0.149 4.149 24 C -0.072 4.072 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.132 4.132 28 C -0.126 4.126 29 C -0.124 4.124 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.022 0.978 36 H -0.006 1.006 37 H 0.267 0.733 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.345 0.655 41 H 0.057 0.943 42 H 0.040 0.960 43 H 0.385 0.615 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.130 0.870 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.134 0.866 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.049 -11.580 26.603 30.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.208 1.208 13 C 0.283 3.717 14 O -0.467 6.467 15 C -0.073 4.073 16 N -0.317 5.317 17 C -0.008 4.008 18 H 0.093 0.907 19 C 0.012 3.988 20 O -0.381 6.381 21 C -0.062 4.062 22 H 0.091 0.909 23 C -0.206 4.206 24 C -0.073 4.073 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.150 4.150 28 C -0.144 4.144 29 C -0.142 4.142 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.040 0.960 36 H 0.013 0.987 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.168 0.832 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.232 0.768 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.147 0.853 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.152 0.848 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.650 -10.594 26.248 29.320 hybrid contribution 0.510 0.067 -0.807 0.957 sum -7.140 -10.527 25.441 28.444 Atomic orbital electron populations 1.22148 0.94473 1.03524 1.01643 1.21742 0.95360 0.81359 1.03837 1.48287 1.64142 1.15133 1.06149 1.18672 0.95200 0.91454 0.80525 1.21730 0.97923 1.31748 1.06374 0.93117 1.25865 1.02396 0.94530 0.96503 1.70059 1.37676 1.34299 1.14858 0.85372 0.79058 0.77994 0.78409 1.19207 1.19216 1.20850 1.21264 0.77312 0.86685 0.86479 1.90642 1.47319 1.20802 1.87890 1.21854 1.01802 0.96269 0.87365 1.60085 1.64066 1.07048 1.00471 1.21723 0.96102 0.95344 0.87653 0.90685 1.22174 0.86944 0.91154 0.98507 1.86554 1.21974 1.37263 1.92276 1.20058 0.98816 0.96130 0.91198 0.90861 1.21922 0.97130 1.00325 1.01254 1.19710 0.95787 0.97318 0.94464 1.21182 0.97633 0.97066 0.98464 1.21413 0.99999 0.99910 0.92825 1.21438 0.95441 0.98423 0.99699 1.21380 0.98466 0.97090 0.97493 1.21203 0.99379 1.00425 0.93189 0.92124 0.94365 0.88526 0.91065 0.88304 0.95984 0.98747 0.92439 0.87270 0.89724 0.83243 0.92464 0.94132 0.76772 0.91207 0.91763 0.93093 0.85256 0.84239 0.84339 0.84793 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 10.24 71.98 0.74 -3.08 16 2 C 0.10 3.00 5.93 86.38 0.51 3.51 16 3 N -0.61 -26.03 2.46 -826.16 -2.03 -28.06 16 4 C 0.26 14.56 5.16 85.64 0.44 15.01 16 5 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 9 Si 0.97 46.18 29.54 68.60 2.03 48.20 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 C 0.49 21.11 7.71 87.66 0.68 21.79 16 14 O -0.59 -31.76 15.78 -3.03 -0.05 -31.81 16 15 C 0.06 1.69 4.52 85.56 0.39 2.08 16 16 N -0.68 -20.00 5.88 -495.57 -2.91 -22.91 16 17 C 0.10 2.15 1.85 44.92 0.08 2.23 16 18 H 0.08 1.28 7.06 -2.39 -0.02 1.26 16 19 C 0.09 1.87 6.46 71.98 0.46 2.33 16 20 O -0.57 -13.81 12.73 -148.98 -1.90 -15.71 16 21 C -0.04 -0.89 2.09 -11.54 -0.02 -0.91 16 22 H 0.07 1.89 7.29 -2.39 -0.02 1.87 16 23 C -0.15 -2.85 8.77 71.98 0.63 -2.22 16 24 C -0.07 -1.29 3.61 -19.87 -0.07 -1.37 16 25 C -0.13 -1.89 8.71 22.27 0.19 -1.70 16 26 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 27 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 28 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 29 C -0.12 -2.21 9.67 22.27 0.22 -1.99 16 30 H 0.06 1.31 7.22 -2.39 -0.02 1.30 16 31 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 34 H 0.10 2.27 6.44 -2.39 -0.02 2.25 16 35 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 36 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 37 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 38 H 0.11 2.77 6.62 -2.38 -0.02 2.76 16 39 H 0.09 1.85 7.10 -2.39 -0.02 1.84 16 40 H 0.35 10.87 5.87 -89.69 -0.53 10.34 16 41 H 0.06 1.00 7.40 -2.39 -0.02 0.98 16 42 H 0.04 0.83 7.35 -2.39 -0.02 0.82 16 43 H 0.38 6.10 9.12 -74.06 -0.68 5.43 16 44 H 0.07 1.11 7.38 -2.39 -0.02 1.09 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.05 1.12 6.21 -2.39 -0.01 1.11 16 47 H 0.13 1.60 7.11 -2.91 -0.02 1.58 16 48 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 49 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 50 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 51 H 0.12 2.13 7.95 -2.91 -0.02 2.11 16 Total: -1.00 -80.62 409.10 0.77 -79.84 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.27 Total: 27.36 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 5.62 Total: 0.24 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -4.66 Total: -108.12 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -1.94 Total: -47.52 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -80.62 0.77 -79.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613390084.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.919 kcal (2) G-P(sol) polarization free energy of solvation -80.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds