Wall clock time and date at job start Tue Mar 31 2020 19:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46994 * 2 1 4 4 C 1.35896 * 116.99665 * 180.02562 * 3 2 1 5 5 C 1.38733 * 120.05374 * 180.02562 * 4 3 2 6 6 C 1.38140 * 119.94871 * 180.02562 * 5 4 3 7 7 C 1.38273 * 120.05206 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.94157 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.46838 * 95.71546 * 8 7 6 10 10 C 1.46906 * 110.99412 * 287.84897 * 9 8 7 11 11 C 1.50696 * 109.46812 * 170.00142 * 10 9 8 12 12 O 1.21279 * 120.00224 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99828 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99902 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47023 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00197 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00087 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99930 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46999 * 90.00429 * 19 17 15 21 21 H 1.48498 * 109.47162 * 210.00496 * 19 17 15 22 22 H 1.48500 * 109.47139 * 330.00260 * 19 17 15 23 23 C 1.46899 * 110.99957 * 163.89985 * 9 8 7 24 24 C 1.53005 * 109.46641 * 294.14330 * 23 9 8 25 25 C 1.52994 * 109.47384 * 54.14282 * 23 9 8 26 26 C 1.38264 * 120.11091 * 0.25797 * 7 6 5 27 27 C 1.38146 * 120.05654 * 359.44772 * 26 7 6 28 28 H 1.09004 * 109.47250 * 299.99482 * 1 2 3 29 29 H 1.08998 * 109.47620 * 60.00031 * 1 2 3 30 30 H 1.09003 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46730 * 240.00536 * 2 1 3 32 32 H 1.08995 * 109.47212 * 120.00603 * 2 1 3 33 33 H 1.08006 * 120.02668 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.97853 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.47574 * 335.71042 * 8 7 6 36 36 H 1.08998 * 109.46811 * 215.70692 * 8 7 6 37 37 H 1.09003 * 109.47116 * 289.99977 * 10 9 8 38 38 H 1.08996 * 109.47087 * 50.00397 * 10 9 8 39 39 H 0.96998 * 120.00532 * 0.02562 * 13 11 10 40 40 H 1.09003 * 109.46908 * 299.99829 * 14 13 11 41 41 H 1.08996 * 109.47249 * 60.00222 * 14 13 11 42 42 H 0.96998 * 119.99886 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.47205 * 174.14895 * 23 9 8 44 44 H 1.08994 * 109.47243 * 66.25631 * 24 23 9 45 45 H 1.09001 * 109.46719 * 186.25289 * 24 23 9 46 46 H 1.09000 * 109.47199 * 306.24917 * 24 23 9 47 47 H 1.09004 * 109.47288 * 59.99871 * 25 23 9 48 48 H 1.09001 * 109.47276 * 179.97438 * 25 23 9 49 49 H 1.09001 * 109.47450 * 300.00463 * 25 23 9 50 50 H 1.07994 * 119.97256 * 179.70353 * 26 7 6 51 51 H 1.07996 * 120.02910 * 180.25528 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5253 -0.0005 5 6 3.8851 2.8068 0.0000 6 6 5.2549 2.9852 -0.0011 7 6 6.0961 1.8878 -0.0032 8 6 7.5901 2.0854 -0.0050 9 7 8.0954 2.0115 1.3724 10 6 7.7154 3.2069 2.1372 11 6 8.0313 2.9919 3.5949 12 8 8.5249 1.9462 3.9607 13 7 7.7664 3.9621 4.4921 14 6 8.0740 3.7533 5.9092 15 6 7.6853 4.9799 6.6936 16 1 7.2519 5.8299 6.1873 17 6 7.8818 5.0168 8.0578 18 7 8.4090 3.9817 8.6744 19 14 7.3993 6.5370 9.0303 20 1 5.9922 6.4065 9.4867 21 1 8.2915 6.6742 10.2094 22 1 7.5305 7.7387 8.1677 23 6 9.5513 1.8166 1.3894 24 6 9.8891 0.4458 0.7994 25 6 10.2221 2.9100 0.5556 26 6 5.5689 0.6097 -0.0097 27 6 4.1997 0.4259 -0.0025 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.2284 3.6643 0.0004 34 1 5.6692 3.9826 -0.0003 35 1 7.8271 3.0619 -0.4271 36 1 8.0589 1.3063 -0.6061 37 1 8.2733 4.0673 1.7676 38 1 6.6471 3.3888 2.0200 39 1 7.3719 4.7986 4.1996 40 1 7.5162 2.8931 6.2792 41 1 9.1423 3.5713 6.0260 42 1 8.5476 4.0077 9.6341 43 1 9.9130 1.8692 2.4163 44 1 9.6280 0.4314 -0.2587 45 1 10.9561 0.2544 0.9129 46 1 9.3239 -0.3247 1.3237 47 1 9.9814 3.8865 0.9759 48 1 11.3024 2.7656 0.5686 49 1 9.8603 2.8574 -0.4713 50 1 6.2280 -0.2458 -0.0162 51 1 3.7884 -0.5726 -0.0033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746154673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:42 Heat of formation + Delta-G solvation = -51.749378 kcal Electronic energy + Delta-G solvation = -28906.630924 eV Core-core repulsion = 24999.192174 eV Total energy + Delta-G solvation = -3907.438750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.38375 -39.47435 -38.04148 -36.97126 -34.07332 -32.72210 -32.30130 -31.82167 -30.97165 -30.33663 -27.93677 -27.15668 -26.37807 -24.51676 -24.14666 -22.46608 -22.08598 -21.31853 -19.94773 -19.22157 -18.40441 -17.02852 -16.40539 -16.31842 -16.11420 -15.80884 -15.40544 -15.06854 -14.75942 -14.41981 -14.31184 -14.05342 -13.78740 -13.61969 -13.57251 -13.43787 -13.27907 -12.87042 -12.76173 -12.43488 -12.30606 -12.02659 -11.97692 -11.90845 -11.74329 -11.65674 -11.48193 -11.15184 -11.01034 -10.94641 -10.93419 -10.85682 -10.77281 -10.44166 -10.26704 -9.36466 -9.06869 -8.88655 -8.69799 -8.25006 -8.04683 -7.79096 -6.14160 -4.20755 1.26813 1.34976 3.01152 3.25726 3.31642 3.33966 3.46373 3.55185 3.95609 4.30483 4.46722 4.59451 4.62296 4.75872 4.79496 4.84273 4.94345 5.01583 5.11946 5.17730 5.21290 5.22097 5.27166 5.37498 5.43790 5.45743 5.47298 5.52826 5.61045 5.63820 5.68227 5.72353 5.73551 5.83240 5.91246 5.96442 6.07345 6.17921 6.27691 6.33794 6.42484 6.58375 6.67974 7.11159 7.23338 7.29920 7.37423 7.51128 7.56458 7.71653 8.00603 8.69378 8.83173 9.19271 9.46174 10.96082 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.002939 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.114473 B = 9523.421967 C =11917.173576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.126 3.874 5 C -0.152 4.152 6 C -0.077 4.077 7 C -0.111 4.111 8 C 0.093 3.907 9 N -0.505 5.505 10 C 0.030 3.970 11 C 0.500 3.500 12 O -0.539 6.539 13 N -0.716 5.716 14 C 0.252 3.748 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.068 3.932 24 C -0.137 4.137 25 C -0.188 4.188 26 C -0.054 4.054 27 C -0.209 4.209 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.389 0.611 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.265 0.735 43 H 0.107 0.893 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.060 0.940 49 H 0.054 0.946 50 H 0.125 0.875 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 -5.698 -23.360 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.081 3.919 5 C -0.170 4.170 6 C -0.096 4.096 7 C -0.112 4.112 8 C -0.034 4.034 9 N -0.229 5.229 10 C -0.102 4.102 11 C 0.284 3.716 12 O -0.417 6.417 13 N -0.365 5.365 14 C 0.132 3.868 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.040 4.040 24 C -0.195 4.195 25 C -0.246 4.246 26 C -0.073 4.073 27 C -0.227 4.227 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.221 0.779 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.125 0.875 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.073 0.927 50 H 0.143 0.857 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.880 -6.803 -22.644 24.922 hybrid contribution -0.069 1.704 0.205 1.717 sum -7.949 -5.099 -22.439 24.346 Atomic orbital electron populations 1.21776 0.92814 1.02812 1.03520 1.22765 0.95803 0.82094 1.01423 1.86054 1.19258 1.29206 1.88748 1.18983 0.82102 0.94233 0.96597 1.20365 0.95129 0.94774 1.06778 1.20875 0.92187 0.98603 0.97885 1.19692 0.95238 0.93106 1.03150 1.21051 0.90937 1.00952 0.90447 1.61897 1.12524 1.37303 1.11126 1.22087 1.02492 0.92452 0.93122 1.20284 0.79497 0.84495 0.87292 1.90620 1.44002 1.26458 1.80579 1.46451 1.62597 1.17190 1.10309 1.19057 0.96614 0.97163 0.74009 1.21237 1.43116 1.00893 0.92787 0.91959 1.24952 0.94844 0.96653 0.97584 1.69977 1.42858 1.29597 1.09896 0.86430 0.78447 0.82601 0.79520 1.20455 1.21026 1.19765 1.21931 0.85922 0.94311 1.01797 1.21788 1.01003 0.96949 0.99763 1.22529 1.01676 1.00104 1.00329 1.20777 0.93910 0.96932 0.95676 1.21216 0.94416 0.97876 1.09238 0.91420 0.91622 0.90419 0.92164 0.91918 0.85361 0.85600 0.93882 0.89557 0.92368 0.88373 0.77930 0.95631 0.95691 0.92487 0.87489 0.93397 0.92515 0.91549 0.92697 0.92054 0.92717 0.85713 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.66 10.14 -19.41 -0.20 -3.86 16 4 C 0.13 1.51 6.69 -39.22 -0.26 1.25 16 5 C -0.15 -1.75 9.99 -39.43 -0.39 -2.15 16 6 C -0.08 -0.85 8.27 -39.60 -0.33 -1.17 16 7 C -0.11 -1.28 4.93 -104.60 -0.52 -1.80 16 8 C 0.09 1.02 3.84 -4.97 -0.02 1.00 16 9 N -0.51 -7.07 4.14 -229.52 -0.95 -8.02 16 10 C 0.03 0.44 5.16 -4.97 -0.03 0.41 16 11 C 0.50 10.12 7.46 -10.99 -0.08 10.04 16 12 O -0.54 -12.96 14.39 5.56 0.08 -12.88 16 13 N -0.72 -15.32 5.55 -61.47 -0.34 -15.66 16 14 C 0.25 6.78 5.43 -5.19 -0.03 6.75 16 15 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 16 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 19 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 23 C 0.07 0.93 2.56 -67.71 -0.17 0.76 16 24 C -0.14 -1.61 9.00 37.16 0.33 -1.27 16 25 C -0.19 -2.10 8.50 37.15 0.32 -1.79 16 26 C -0.05 -0.62 9.72 -39.61 -0.38 -1.01 16 27 C -0.21 -2.34 9.04 -39.43 -0.36 -2.70 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 32 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 33 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.13 1.15 8.03 -52.49 -0.42 0.73 16 35 H 0.04 0.43 7.05 -51.93 -0.37 0.06 16 36 H 0.09 0.86 6.01 -51.93 -0.31 0.55 16 37 H 0.06 0.75 6.39 -51.93 -0.33 0.42 16 38 H 0.10 1.37 6.15 -51.93 -0.32 1.05 16 39 H 0.39 7.15 8.32 -40.82 -0.34 6.81 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.11 1.88 5.79 -51.93 -0.30 1.58 16 44 H 0.05 0.47 6.54 -51.93 -0.34 0.13 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.05 0.53 6.70 -51.93 -0.35 0.18 16 50 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 51 H 0.12 1.15 6.30 -52.49 -0.33 0.82 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -33.14 405.76 -9.64 -42.77 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.31 Total: 6.25 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -1.75 Total: -5.11 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.55 Total: -49.31 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.12 Total: -16.73 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.14 -9.64 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746154673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.978 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds