Wall clock time and date at job start Tue Mar 31 2020 19:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46994 * 2 1 4 4 C 1.35896 * 116.99665 * 180.02562 * 3 2 1 5 5 C 1.38733 * 120.05374 * 180.02562 * 4 3 2 6 6 C 1.38140 * 119.94871 * 180.02562 * 5 4 3 7 7 C 1.38273 * 120.05206 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.94157 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.46838 * 95.71546 * 8 7 6 10 10 C 1.46906 * 110.99412 * 287.84897 * 9 8 7 11 11 C 1.50696 * 109.46812 * 170.00142 * 10 9 8 12 12 O 1.21279 * 120.00224 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99828 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99902 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47023 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00197 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00087 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99930 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46999 * 90.00429 * 19 17 15 21 21 H 1.48498 * 109.47162 * 210.00496 * 19 17 15 22 22 H 1.48500 * 109.47139 * 330.00260 * 19 17 15 23 23 C 1.46899 * 110.99957 * 163.89985 * 9 8 7 24 24 C 1.53005 * 109.46641 * 294.14330 * 23 9 8 25 25 C 1.52994 * 109.47384 * 54.14282 * 23 9 8 26 26 C 1.38264 * 120.11091 * 0.25797 * 7 6 5 27 27 C 1.38146 * 120.05654 * 359.44772 * 26 7 6 28 28 H 1.09004 * 109.47250 * 299.99482 * 1 2 3 29 29 H 1.08998 * 109.47620 * 60.00031 * 1 2 3 30 30 H 1.09003 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46730 * 240.00536 * 2 1 3 32 32 H 1.08995 * 109.47212 * 120.00603 * 2 1 3 33 33 H 1.08006 * 120.02668 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.97853 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.47574 * 335.71042 * 8 7 6 36 36 H 1.08998 * 109.46811 * 215.70692 * 8 7 6 37 37 H 1.09003 * 109.47116 * 289.99977 * 10 9 8 38 38 H 1.08996 * 109.47087 * 50.00397 * 10 9 8 39 39 H 0.96998 * 120.00532 * 0.02562 * 13 11 10 40 40 H 1.09003 * 109.46908 * 299.99829 * 14 13 11 41 41 H 1.08996 * 109.47249 * 60.00222 * 14 13 11 42 42 H 0.96998 * 119.99886 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.47205 * 174.14895 * 23 9 8 44 44 H 1.08994 * 109.47243 * 66.25631 * 24 23 9 45 45 H 1.09001 * 109.46719 * 186.25289 * 24 23 9 46 46 H 1.09000 * 109.47199 * 306.24917 * 24 23 9 47 47 H 1.09004 * 109.47288 * 59.99871 * 25 23 9 48 48 H 1.09001 * 109.47276 * 179.97438 * 25 23 9 49 49 H 1.09001 * 109.47450 * 300.00463 * 25 23 9 50 50 H 1.07994 * 119.97256 * 179.70353 * 26 7 6 51 51 H 1.07996 * 120.02910 * 180.25528 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5253 -0.0005 5 6 3.8851 2.8068 0.0000 6 6 5.2549 2.9852 -0.0011 7 6 6.0961 1.8878 -0.0032 8 6 7.5901 2.0854 -0.0050 9 7 8.0954 2.0115 1.3724 10 6 7.7154 3.2069 2.1372 11 6 8.0313 2.9919 3.5949 12 8 8.5249 1.9462 3.9607 13 7 7.7664 3.9621 4.4921 14 6 8.0740 3.7533 5.9092 15 6 7.6853 4.9799 6.6936 16 1 7.2519 5.8299 6.1873 17 6 7.8818 5.0168 8.0578 18 7 8.4090 3.9817 8.6744 19 14 7.3993 6.5370 9.0303 20 1 5.9922 6.4065 9.4867 21 1 8.2915 6.6742 10.2094 22 1 7.5305 7.7387 8.1677 23 6 9.5513 1.8166 1.3894 24 6 9.8891 0.4458 0.7994 25 6 10.2221 2.9100 0.5556 26 6 5.5689 0.6097 -0.0097 27 6 4.1997 0.4259 -0.0025 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.2284 3.6643 0.0004 34 1 5.6692 3.9826 -0.0003 35 1 7.8271 3.0619 -0.4271 36 1 8.0589 1.3063 -0.6061 37 1 8.2733 4.0673 1.7676 38 1 6.6471 3.3888 2.0200 39 1 7.3719 4.7986 4.1996 40 1 7.5162 2.8931 6.2792 41 1 9.1423 3.5713 6.0260 42 1 8.5476 4.0077 9.6341 43 1 9.9130 1.8692 2.4163 44 1 9.6280 0.4314 -0.2587 45 1 10.9561 0.2544 0.9129 46 1 9.3239 -0.3247 1.3237 47 1 9.9814 3.8865 0.9759 48 1 11.3024 2.7656 0.5686 49 1 9.8603 2.8574 -0.4713 50 1 6.2280 -0.2458 -0.0162 51 1 3.7884 -0.5726 -0.0033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746154673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:41 Heat of formation + Delta-G solvation = -73.832052 kcal Electronic energy + Delta-G solvation = -28907.588500 eV Core-core repulsion = 24999.192174 eV Total energy + Delta-G solvation = -3908.396327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29355 -40.74356 -39.23492 -37.99516 -36.05100 -34.34576 -33.51778 -32.69584 -31.77376 -31.36353 -29.59202 -28.17748 -27.67670 -25.65783 -24.88030 -24.31076 -22.95559 -22.16911 -21.50083 -20.46580 -19.21062 -18.82731 -17.52819 -17.43310 -17.09169 -16.99806 -16.85661 -16.60035 -16.03486 -15.72011 -15.52671 -15.09988 -15.02904 -14.69908 -14.41131 -14.36400 -14.23495 -14.15214 -13.94606 -13.74457 -13.50326 -13.35961 -13.12807 -12.90082 -12.77514 -12.72296 -12.66618 -12.54487 -12.45264 -12.23297 -12.07472 -11.93158 -11.68366 -11.60005 -11.48788 -11.46919 -10.79660 -10.55743 -9.89041 -9.77922 -9.19459 -8.97167 -8.29144 -6.45729 0.43102 0.48471 1.42386 1.45015 1.56117 1.83972 2.28820 2.29959 2.47834 2.80835 3.05580 3.23160 3.84845 3.93550 3.97897 3.99141 4.04370 4.09034 4.13277 4.24971 4.26200 4.35524 4.36812 4.46721 4.48187 4.50903 4.57916 4.69536 4.78094 4.80069 4.87743 4.92458 4.93162 5.02581 5.11356 5.13998 5.16432 5.20122 5.25216 5.29896 5.36667 5.44567 5.46442 5.50416 5.71313 5.73022 5.85866 5.87866 6.09566 6.25885 6.49660 6.65738 6.97882 7.24016 7.56338 8.83142 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.002939 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.114473 B = 9523.421967 C =11917.173576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.335 6.335 4 C 0.111 3.889 5 C -0.166 4.166 6 C -0.078 4.078 7 C -0.122 4.122 8 C 0.099 3.901 9 N -0.524 5.524 10 C 0.046 3.954 11 C 0.495 3.505 12 O -0.582 6.582 13 N -0.712 5.712 14 C 0.271 3.729 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.984 3.016 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.254 1.254 23 C 0.067 3.933 24 C -0.132 4.132 25 C -0.180 4.180 26 C -0.066 4.066 27 C -0.216 4.216 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.136 0.864 34 H 0.147 0.853 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.406 0.594 40 H -0.018 1.018 41 H -0.014 1.014 42 H 0.268 0.732 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.049 0.951 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.131 0.869 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.770 -3.931 -25.459 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.250 6.250 4 C 0.066 3.934 5 C -0.185 4.185 6 C -0.096 4.096 7 C -0.123 4.123 8 C -0.027 4.027 9 N -0.249 5.249 10 C -0.085 4.085 11 C 0.282 3.718 12 O -0.462 6.462 13 N -0.363 5.363 14 C 0.148 3.852 15 C -0.593 4.593 16 H 0.101 0.899 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.807 3.193 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.178 1.178 23 C -0.041 4.041 24 C -0.189 4.189 25 C -0.238 4.238 26 C -0.084 4.084 27 C -0.235 4.235 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.165 0.835 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.241 0.759 40 H 0.000 1.000 41 H 0.004 0.996 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.149 0.851 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.730 -5.019 -24.800 26.767 hybrid contribution 0.177 1.029 0.826 1.332 sum -8.553 -3.990 -23.974 25.765 Atomic orbital electron populations 1.21803 0.91485 1.04134 1.03172 1.23016 0.96908 0.80975 1.01986 1.86039 1.19106 1.31057 1.88752 1.19234 0.82526 0.94767 0.96874 1.20623 0.95785 0.95046 1.06998 1.21124 0.91898 0.99496 0.97092 1.19844 0.95668 0.93264 1.03490 1.21092 0.90463 1.02586 0.88566 1.61819 1.12872 1.37069 1.13102 1.21952 1.03682 0.94012 0.88833 1.21345 0.77810 0.83206 0.89437 1.90607 1.45569 1.28254 1.81785 1.46207 1.63123 1.18608 1.08401 1.18461 0.93473 0.95948 0.77311 1.21625 1.43030 1.01282 0.93341 0.89863 1.26077 0.94413 1.00236 0.98927 1.70144 1.44159 1.32316 1.10410 0.85166 0.78080 0.78362 0.77673 1.19657 1.20902 1.17810 1.21814 0.86067 0.96406 0.99840 1.21739 1.01147 0.95162 1.00878 1.22444 1.01823 0.98592 1.00964 1.20992 0.94211 0.97487 0.95743 1.21413 0.94453 0.98533 1.09091 0.92202 0.91492 0.88264 0.90899 0.92004 0.84581 0.83495 0.91800 0.88243 0.89546 0.86862 0.75852 0.99962 0.99611 0.92277 0.92210 0.90758 0.91851 0.93597 0.93160 0.91572 0.90296 0.85063 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.05 0.72 5.46 71.98 0.39 1.11 16 3 O -0.33 -7.53 10.14 -92.38 -0.94 -8.46 16 4 C 0.11 2.59 6.69 22.51 0.15 2.74 16 5 C -0.17 -3.62 9.99 22.36 0.22 -3.40 16 6 C -0.08 -1.53 8.27 22.25 0.18 -1.35 16 7 C -0.12 -2.55 4.93 -19.85 -0.10 -2.65 16 8 C 0.10 1.88 3.84 85.56 0.33 2.21 16 9 N -0.52 -13.93 4.14 -880.06 -3.64 -17.57 16 10 C 0.05 1.30 5.16 85.55 0.44 1.74 16 11 C 0.50 20.41 7.46 87.66 0.65 21.06 16 12 O -0.58 -29.45 14.39 -3.03 -0.04 -29.50 16 13 N -0.71 -31.01 5.55 -466.79 -2.59 -33.59 16 14 C 0.27 15.25 5.43 85.63 0.46 15.72 16 15 C -0.55 -30.72 9.28 25.60 0.24 -30.49 16 16 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 17 C 0.00 0.16 5.46 84.65 0.46 0.63 16 18 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 19 Si 0.98 42.85 29.54 68.60 2.03 44.88 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 23 C 0.07 1.77 2.56 44.92 0.11 1.89 16 24 C -0.13 -2.95 9.00 71.98 0.65 -2.30 16 25 C -0.18 -3.58 8.50 71.98 0.61 -2.97 16 26 C -0.07 -1.43 9.72 22.25 0.22 -1.21 16 27 C -0.22 -4.66 9.04 22.37 0.20 -4.46 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 32 H 0.06 0.96 7.67 -2.39 -0.02 0.94 16 33 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.15 2.17 8.03 -2.91 -0.02 2.15 16 35 H 0.06 0.98 7.05 -2.39 -0.02 0.96 16 36 H 0.10 1.64 6.01 -2.39 -0.01 1.62 16 37 H 0.09 1.98 6.39 -2.39 -0.02 1.97 16 38 H 0.11 2.89 6.15 -2.39 -0.01 2.88 16 39 H 0.41 14.60 8.32 -92.71 -0.77 13.83 16 40 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 41 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 42 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.06 2.18 5.79 -2.39 -0.01 2.16 16 44 H 0.07 1.25 6.54 -2.39 -0.02 1.23 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.05 1.04 6.57 -2.39 -0.02 1.03 16 48 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.08 1.20 6.70 -2.39 -0.02 1.19 16 50 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 51 H 0.14 2.43 6.30 -2.91 -0.02 2.42 16 Total: -1.00 -75.82 405.76 1.23 -74.59 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.15 Total: 29.22 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.98 Total: -2.72 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -5.95 Total: -108.01 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.98 Total: -37.96 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -75.82 1.23 -74.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746154673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.755 kcal (2) G-P(sol) polarization free energy of solvation -75.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds