Wall clock time and date at job start Tue Mar 31 2020 18:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46579 * 2 1 4 4 C 1.50694 * 109.47089 * 240.00686 * 2 1 3 5 5 O 1.21287 * 119.99761 * 250.73164 * 4 2 1 6 6 N 1.34776 * 120.00696 * 70.73286 * 4 2 1 7 7 C 1.46493 * 120.00410 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47276 * 59.99362 * 7 6 4 9 9 C 1.53004 * 109.47684 * 179.97438 * 7 6 4 10 10 C 1.53001 * 109.46954 * 299.99800 * 7 6 4 11 11 N 1.46898 * 109.47192 * 119.99776 * 2 1 3 12 12 C 1.46896 * 111.00244 * 282.50532 * 11 2 1 13 13 C 1.46904 * 110.99389 * 46.45973 * 11 2 1 14 14 C 1.50705 * 109.46644 * 169.99757 * 13 11 2 15 15 C 1.38299 * 119.93089 * 89.99869 * 14 13 11 16 16 C 1.38099 * 120.06873 * 180.02562 * 15 14 13 17 17 C 1.38881 * 119.93356 * 359.97438 * 16 15 14 18 18 O 1.35751 * 120.07195 * 180.02562 * 17 16 15 19 19 C 1.34832 * 116.99856 * 358.21692 * 18 17 16 20 20 H 1.07995 * 119.99683 * 5.40365 * 19 18 17 21 21 C 1.38652 * 119.99767 * 185.40255 * 19 18 17 22 22 N 1.31559 * 119.99951 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99810 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46949 * 90.00201 * 23 21 19 25 25 H 1.48496 * 109.47083 * 209.99914 * 23 21 19 26 26 H 1.48500 * 109.47108 * 330.00040 * 23 21 19 27 27 C 1.38885 * 119.85897 * 0.27099 * 17 16 15 28 28 C 1.38107 * 119.92780 * 359.49567 * 27 17 16 29 29 H 1.09000 * 109.46905 * 299.99766 * 1 2 3 30 30 H 1.09001 * 109.46775 * 59.99885 * 1 2 3 31 31 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 32 32 H 0.96999 * 119.99639 * 359.97438 * 6 4 2 33 33 H 1.09005 * 109.47021 * 60.00364 * 8 7 6 34 34 H 1.09009 * 109.47185 * 180.02562 * 8 7 6 35 35 H 1.08997 * 109.47113 * 300.00291 * 8 7 6 36 36 H 1.09003 * 109.46206 * 59.99538 * 9 7 6 37 37 H 1.08994 * 109.47265 * 179.97438 * 9 7 6 38 38 H 1.08994 * 109.46809 * 300.00363 * 9 7 6 39 39 H 1.08997 * 109.47331 * 59.99773 * 10 7 6 40 40 H 1.09009 * 109.47101 * 180.02562 * 10 7 6 41 41 H 1.08996 * 109.46951 * 299.99651 * 10 7 6 42 42 H 1.09003 * 109.47157 * 183.40366 * 12 11 2 43 43 H 1.09003 * 109.47114 * 303.39898 * 12 11 2 44 44 H 1.08993 * 109.47405 * 63.40078 * 12 11 2 45 45 H 1.09001 * 109.47397 * 49.99918 * 13 11 2 46 46 H 1.08995 * 109.47165 * 289.99514 * 13 11 2 47 47 H 1.07998 * 119.96546 * 359.97438 * 15 14 13 48 48 H 1.08003 * 120.03499 * 179.97438 * 16 15 14 49 49 H 0.97007 * 119.99750 * 180.02562 * 22 21 19 50 50 H 1.08001 * 120.03263 * 179.72232 * 27 17 16 51 51 H 1.07998 * 119.96374 * 180.22920 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 8 2.5613 -1.7970 -1.1299 6 7 1.8939 -0.1379 -2.4428 7 6 2.3817 -0.8286 -3.6390 8 6 1.6638 -2.1724 -3.7805 9 6 2.1026 0.0307 -4.8738 10 6 3.8879 -1.0660 -3.5122 11 7 2.0197 -0.6924 1.1994 12 6 1.9153 0.1694 2.3844 13 6 1.3044 -1.9590 1.4049 14 6 1.9896 -2.7530 2.4871 15 6 1.6099 -2.5911 3.8071 16 6 2.2362 -3.3168 4.8012 17 6 3.2480 -4.2103 4.4743 18 8 3.8652 -4.9255 5.4491 19 6 3.4741 -4.6944 6.7186 20 1 2.6435 -4.0329 6.9158 21 6 4.1383 -5.3060 7.7708 22 7 5.1497 -6.1123 7.5305 23 14 3.5960 -4.9864 9.5296 24 1 2.5709 -5.9871 9.9211 25 1 4.7668 -5.0965 10.4364 26 1 3.0191 -3.6217 9.6295 27 6 3.6305 -4.3668 3.1483 28 6 2.9969 -3.6417 2.1583 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.4706 0.7311 -2.5233 33 1 0.5908 -2.0033 -3.8708 34 1 2.0272 -2.6865 -4.6704 35 1 1.8624 -2.7847 -2.9009 36 1 2.6138 0.9881 -4.7731 37 1 2.4660 -0.4831 -5.7637 38 1 1.0296 0.1995 -4.9639 39 1 4.0864 -1.6784 -2.6327 40 1 4.2510 -1.5796 -4.4026 41 1 4.3993 -0.1088 -3.4115 42 1 2.3399 -0.3451 3.2465 43 1 2.4617 1.0961 2.2090 44 1 0.8669 0.3967 2.5771 45 1 1.3062 -2.5319 0.4775 46 1 0.2764 -1.7517 1.7019 47 1 0.8234 -1.8959 4.0608 48 1 1.9396 -3.1897 5.8319 49 1 5.6141 -6.5405 8.2667 50 1 4.4200 -5.0575 2.8914 51 1 3.2914 -3.7656 1.1266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776858797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:06 Heat of formation + Delta-G solvation = -54.795906 kcal Electronic energy + Delta-G solvation = -29304.592719 eV Core-core repulsion = 25397.021862 eV Total energy + Delta-G solvation = -3907.570857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41052 -40.74668 -39.19281 -37.86236 -36.85740 -34.34142 -33.50692 -31.91783 -31.70334 -30.54365 -28.20196 -28.16161 -27.85876 -27.12783 -26.15257 -23.78819 -23.49800 -22.08656 -20.84563 -20.40482 -19.82119 -18.81570 -18.10820 -17.23115 -16.60890 -16.44239 -16.23347 -16.17138 -15.73141 -15.46905 -15.44450 -15.23649 -14.93932 -14.89348 -14.45672 -14.34604 -14.28435 -13.97376 -13.63149 -13.54245 -13.23220 -13.19582 -12.99915 -12.95717 -12.92790 -12.66245 -12.59931 -12.45510 -12.42142 -12.21745 -12.13387 -12.11884 -11.99758 -11.94638 -11.83973 -11.15306 -10.78838 -10.31955 -9.93809 -9.75154 -9.15059 -8.85320 -8.46037 -6.14378 0.61497 0.69703 1.34806 1.44803 1.53101 1.82784 2.18445 2.20196 2.78059 3.08175 3.38211 3.52576 3.74919 3.97283 4.00103 4.04847 4.06351 4.16537 4.16899 4.21271 4.25047 4.41989 4.51532 4.61575 4.63742 4.73098 4.75153 4.75308 4.80287 4.84201 4.89244 4.89614 4.89914 5.00443 5.04909 5.11787 5.13920 5.17540 5.22521 5.25932 5.33350 5.41882 5.44049 5.59505 5.71392 5.75685 5.85414 6.03823 6.09730 6.19607 6.26354 6.79665 6.98292 7.50465 7.80318 8.77577 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.002266 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.152038 B =12355.793360 C =13084.042655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.064 3.936 3 H 0.125 0.875 4 C 0.515 3.485 5 O -0.552 6.552 6 N -0.714 5.714 7 C 0.168 3.832 8 C -0.160 4.160 9 C -0.146 4.146 10 C -0.161 4.161 11 N -0.536 5.536 12 C 0.024 3.976 13 C 0.122 3.878 14 C -0.150 4.150 15 C -0.057 4.057 16 C -0.240 4.240 17 C 0.116 3.884 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.103 0.897 21 C -0.026 4.026 22 N -0.923 5.923 23 Si 1.021 2.979 24 H -0.263 1.263 25 H -0.272 1.272 26 H -0.251 1.251 27 C -0.208 4.208 28 C -0.047 4.047 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.412 0.588 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.077 0.923 46 H 0.051 0.949 47 H 0.141 0.859 48 H 0.122 0.878 49 H 0.272 0.728 50 H 0.106 0.894 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 19.857 -23.007 32.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.048 4.048 3 H 0.142 0.858 4 C 0.302 3.698 5 O -0.429 6.429 6 N -0.369 5.369 7 C 0.082 3.918 8 C -0.218 4.218 9 C -0.204 4.204 10 C -0.220 4.220 11 N -0.260 5.260 12 C -0.124 4.124 13 C -0.005 4.005 14 C -0.151 4.151 15 C -0.075 4.075 16 C -0.259 4.259 17 C 0.065 3.935 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.120 0.880 21 C -0.223 4.223 22 N -0.561 5.561 23 Si 0.840 3.160 24 H -0.188 1.188 25 H -0.196 1.196 26 H -0.175 1.175 27 C -0.228 4.228 28 C -0.066 4.066 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.249 0.751 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.158 0.842 48 H 0.140 0.860 49 H 0.081 0.919 50 H 0.124 0.876 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.654 18.684 -22.935 31.795 hybrid contribution -0.496 -0.066 1.115 1.222 sum -12.150 18.618 -21.820 31.151 Atomic orbital electron populations 1.22348 0.93420 1.02927 1.04634 1.21746 0.95549 0.98878 0.88580 0.85752 1.20836 0.78139 0.85794 0.85076 1.90656 1.43328 1.22428 1.86461 1.46054 1.62052 1.23451 1.05326 1.20356 0.93219 0.92847 0.85341 1.22176 1.00329 0.97111 1.02232 1.22027 1.03115 0.99758 0.95490 1.22181 0.95492 1.01890 1.02397 1.61723 1.56984 1.04171 1.03078 1.22465 1.00710 0.96860 0.92366 1.20804 0.93679 0.89618 0.96399 1.19578 1.00353 1.00877 0.94254 1.20913 0.98129 0.97029 0.91466 1.21220 1.01373 1.02655 1.00700 1.19864 0.92537 0.91352 0.89710 1.83954 1.57942 1.56638 1.15526 1.21843 1.16922 1.30420 0.79701 0.87962 1.26654 0.95460 0.95508 1.04705 1.70206 1.21791 1.29783 1.34334 0.84556 0.78092 0.79714 0.73627 1.18769 1.19646 1.17460 1.20386 1.05300 1.06596 0.90492 1.20722 0.94160 0.94012 0.97664 0.90400 0.89208 0.92911 0.75122 0.92087 0.91191 0.93532 0.91006 0.90295 0.90759 0.93625 0.91153 0.92449 0.92677 0.90200 0.93655 0.90445 0.93075 0.84176 0.86021 0.91890 0.87619 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 8.29 71.98 0.60 -1.45 16 2 C 0.06 1.06 2.69 44.17 0.12 1.18 16 3 H 0.12 1.45 7.88 -2.38 -0.02 1.43 16 4 C 0.52 10.42 6.32 87.66 0.55 10.98 16 5 O -0.55 -16.38 10.79 -3.05 -0.03 -16.41 16 6 N -0.71 -9.25 5.10 -422.92 -2.16 -11.41 16 7 C 0.17 2.31 1.06 3.61 0.00 2.31 16 8 C -0.16 -2.67 8.40 71.98 0.60 -2.07 16 9 C -0.15 -1.00 8.59 71.98 0.62 -0.38 16 10 C -0.16 -2.88 8.40 71.98 0.60 -2.28 16 11 N -0.54 -12.95 4.39 -906.05 -3.98 -16.92 16 12 C 0.02 0.49 8.94 127.69 1.14 1.64 16 13 C 0.12 3.35 3.56 85.56 0.30 3.65 16 14 C -0.15 -5.30 4.89 -19.83 -0.10 -5.40 16 15 C -0.06 -2.06 7.94 22.25 0.18 -1.89 16 16 C -0.24 -10.94 9.17 22.39 0.21 -10.74 16 17 C 0.12 6.16 6.65 22.58 0.15 6.31 16 18 O -0.23 -14.77 9.76 -22.77 -0.22 -15.00 16 19 C -0.41 -24.81 9.48 67.92 0.64 -24.17 16 20 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 21 C -0.03 -1.53 5.49 84.83 0.47 -1.07 16 22 N -0.92 -58.41 13.67 21.61 0.30 -58.11 16 23 Si 1.02 43.86 29.55 68.60 2.03 45.89 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 27 C -0.21 -10.02 9.99 22.39 0.22 -9.79 16 28 C -0.05 -1.91 9.69 22.25 0.22 -1.69 16 29 H 0.08 0.80 7.09 -2.39 -0.02 0.78 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.81 6.54 -2.39 -0.02 0.80 16 32 H 0.41 2.50 8.47 -92.71 -0.79 1.71 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.05 1.12 6.17 -2.39 -0.01 1.11 16 36 H 0.07 0.37 8.14 -2.39 -0.02 0.36 16 37 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.07 0.34 8.14 -2.39 -0.02 0.33 16 39 H 0.04 1.18 6.17 -2.39 -0.01 1.16 16 40 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.05 1.48 6.13 -2.39 -0.01 1.46 16 43 H 0.08 1.39 8.00 -2.39 -0.02 1.37 16 44 H 0.05 0.75 7.09 -2.39 -0.02 0.73 16 45 H 0.08 2.35 6.09 -2.39 -0.01 2.34 16 46 H 0.05 1.20 6.80 -2.39 -0.02 1.19 16 47 H 0.14 4.00 8.02 -2.91 -0.02 3.98 16 48 H 0.12 5.53 5.62 -2.91 -0.02 5.51 16 49 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 50 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 51 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -79.63 398.99 2.61 -77.02 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.15 Total: 29.80 kcal Atomic # 6 Polarization: -41.38 SS G_CDS: 6.53 Total: -34.85 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -5.84 Total: -86.45 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.26 Total: -31.41 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -79.63 2.61 -77.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776858797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.223 kcal (2) G-P(sol) polarization free energy of solvation -79.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds